Wall clock time and date at job start Tue Mar 31 2020 17:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30838 * 125.89843 * 2 1 4 4 N 1.40086 * 108.20660 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03827 * 180.02562 * 4 3 2 6 6 C 1.50692 * 109.46980 * 90.02500 * 5 4 3 7 7 H 1.08005 * 120.00496 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00281 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99554 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00475 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47291 * 59.99827 * 10 8 6 12 12 H 1.48500 * 109.47207 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46680 * 299.99917 * 10 8 6 14 14 C 1.34952 * 107.92091 * 359.76332 * 4 3 2 15 15 C 1.50702 * 126.12478 * 180.23939 * 14 4 3 16 16 C 1.35312 * 107.74790 * 0.38650 * 14 4 3 17 17 C 1.50706 * 126.03941 * 179.87942 * 16 14 4 18 18 C 1.53002 * 109.46925 * 269.71456 * 17 16 14 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 16 20 20 O 1.21279 * 119.99697 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00141 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99875 * 179.97438 * 21 19 18 23 23 C 1.50702 * 109.47283 * 180.02562 * 22 21 19 24 24 N 1.33245 * 125.52499 * 269.69817 * 23 22 21 25 25 C 1.30831 * 109.82810 * 179.84837 * 24 23 22 26 26 N 1.34434 * 108.07840 * 0.40525 * 25 24 23 27 27 H 0.96997 * 126.82915 * 179.78605 * 26 25 24 28 28 N 1.30709 * 125.52658 * 89.99980 * 23 22 21 29 29 H 1.08999 * 109.46488 * 269.97088 * 1 2 3 30 30 H 1.09001 * 109.47093 * 29.96982 * 1 2 3 31 31 H 1.09000 * 109.46733 * 149.97376 * 1 2 3 32 32 H 1.09004 * 109.47073 * 210.02835 * 5 4 3 33 33 H 1.09005 * 109.47034 * 330.02505 * 5 4 3 34 34 H 0.96999 * 119.99646 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.46971 * 270.17666 * 15 14 4 36 36 H 1.09001 * 109.47110 * 30.17735 * 15 14 4 37 37 H 1.08998 * 109.46919 * 150.17061 * 15 14 4 38 38 H 1.09000 * 109.47318 * 29.70689 * 17 16 14 39 39 H 1.09000 * 109.47161 * 149.71320 * 17 16 14 40 40 H 1.09004 * 109.46930 * 299.99901 * 18 17 16 41 41 H 1.09004 * 109.47059 * 59.99503 * 18 17 16 42 42 H 0.96999 * 120.00043 * 0.02562 * 21 19 18 43 43 H 1.08996 * 109.47565 * 300.00629 * 22 21 19 44 44 H 1.09004 * 109.47374 * 60.00435 * 22 21 19 45 45 H 1.08002 * 125.96458 * 180.12209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6089 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 5.1956 1.7964 1.4206 7 1 4.6304 1.3801 2.2414 8 6 6.2889 2.5977 1.6730 9 7 6.9781 3.1035 0.6735 10 14 6.7922 2.9636 3.4342 11 1 7.1104 1.6923 4.1325 12 1 7.9894 3.8423 3.4346 13 1 5.6765 3.6479 4.1358 14 6 3.6143 -0.7154 0.0044 15 6 4.8351 -1.5989 0.0107 16 6 2.3272 -1.1330 -0.0007 17 6 1.8600 -2.5658 -0.0005 18 6 1.7015 -3.0508 -1.4429 19 6 1.2337 -4.4833 -1.4427 20 8 1.0460 -5.0597 -0.3923 21 7 1.0239 -5.1238 -2.6099 22 6 0.5696 -6.5166 -2.6096 23 6 0.4134 -6.9943 -4.0304 24 7 -0.6995 -6.9086 -4.7580 25 6 -0.4921 -7.4130 -5.9473 26 7 0.7792 -7.8470 -6.0004 27 1 1.2179 -8.2703 -6.7548 28 7 1.3460 -7.5649 -4.7467 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 5.6091 0.9987 -0.5151 33 1 4.5561 2.4338 -0.5130 34 1 7.7471 3.6675 0.8510 35 1 5.1338 -1.8131 -1.0154 36 1 5.6489 -1.0904 0.5275 37 1 4.6054 -2.5322 0.5247 38 1 2.5936 -3.1872 0.5131 39 1 0.9013 -2.6353 0.5136 40 1 0.9678 -2.4294 -1.9566 41 1 2.6602 -2.9812 -1.9570 42 1 1.1743 -4.6629 -3.4500 43 1 1.3033 -7.1380 -2.0963 44 1 -0.3888 -6.5861 -2.0951 45 1 -1.2171 -7.4746 -6.7454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442307940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:35 Heat of formation + Delta-G solvation = 104.785571 kcal Electronic energy + Delta-G solvation = -27060.024650 eV Core-core repulsion = 23115.437651 eV Total energy + Delta-G solvation = -3944.586999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.68274 -40.58475 -39.64129 -35.42886 -34.34660 -33.34710 -32.95642 -32.44939 -31.87891 -30.32082 -28.93629 -27.95159 -26.26980 -25.84597 -23.71704 -23.28661 -22.14681 -21.05166 -20.41045 -18.94491 -18.76488 -18.59976 -17.13183 -16.67410 -16.51906 -16.01652 -15.64261 -15.43637 -15.27159 -14.49836 -14.35768 -14.03049 -13.81004 -13.38108 -13.11850 -12.95334 -12.85646 -12.70060 -12.50024 -12.40210 -12.19772 -12.06963 -11.80575 -11.58032 -11.32178 -11.18006 -10.94395 -10.80301 -10.77388 -10.68469 -10.63067 -10.42221 -10.24109 -9.85967 -9.72170 -9.56355 -9.31366 -8.63048 -8.14354 -7.44105 -6.24925 -4.32377 0.98378 2.05568 2.16317 2.62508 2.79499 3.15477 3.24470 3.28058 3.32445 3.44228 3.56971 3.66134 4.08725 4.31016 4.40609 4.77398 5.08453 5.18467 5.23208 5.27017 5.33222 5.39369 5.44703 5.59140 5.72858 5.75774 5.79540 5.90191 6.00393 6.01297 6.05124 6.09206 6.12007 6.28800 6.42009 6.42914 6.53703 6.58253 6.92192 7.04404 7.14482 7.29422 7.48031 7.55376 7.67907 7.90231 8.09018 8.13205 8.69599 8.78004 9.34054 10.82489 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.001976 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.489801 B =14163.628855 C =14548.794158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.326 5.326 5 C 0.257 3.743 6 C -0.536 4.536 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.094 3.906 15 C -0.091 4.091 16 C -0.268 4.268 17 C -0.011 4.011 18 C -0.132 4.132 19 C 0.519 3.481 20 O -0.536 6.536 21 N -0.731 5.731 22 C 0.216 3.784 23 C 0.212 3.788 24 N -0.532 5.532 25 C 0.264 3.736 26 N -0.482 5.482 27 H 0.444 0.556 28 N -0.295 5.295 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.402 0.598 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.789 -21.429 -15.373 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.140 3.860 6 C -0.575 4.575 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.200 1.200 14 C -0.038 4.038 15 C -0.150 4.150 16 C -0.281 4.281 17 C -0.050 4.050 18 C -0.172 4.172 19 C 0.306 3.694 20 O -0.412 6.412 21 N -0.385 5.385 22 C 0.090 3.910 23 C -0.071 4.071 24 N -0.260 5.260 25 C -0.036 4.036 26 N -0.200 5.200 27 H 0.290 0.710 28 N -0.125 5.125 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.236 0.764 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.194 -20.301 -14.220 27.623 hybrid contribution 0.611 -0.638 -0.469 1.001 sum -11.583 -20.940 -14.689 28.078 Atomic orbital electron populations 1.20025 0.88035 1.02077 1.02142 1.21957 0.96117 0.90766 1.02538 1.77264 0.87533 1.22694 1.24635 1.49244 1.05739 1.04198 1.51366 1.19636 0.77977 0.89578 0.98850 1.21283 1.13002 1.31790 0.91385 0.91835 1.24935 0.95729 0.95015 0.98130 1.69915 1.19021 1.32980 1.31088 0.86410 0.78009 0.78489 0.83765 1.19919 1.20966 1.19953 1.20774 0.96136 0.85654 1.01194 1.20403 0.94420 0.97842 1.02305 1.19358 0.91364 0.95096 1.22233 1.19405 1.01691 0.90834 0.93037 1.21749 1.03100 0.90844 1.01496 1.21050 0.76318 0.89256 0.82743 1.90709 1.50953 1.68460 1.31091 1.45973 1.70308 1.12648 1.09589 1.19352 1.02405 0.83222 0.86001 1.24251 0.87058 0.97863 0.97967 1.70480 1.27919 1.24427 1.03159 1.26214 0.87051 0.93313 0.96982 1.48211 1.10863 1.47631 1.13304 0.70988 1.78098 1.21439 1.21593 0.91397 0.91385 0.91675 0.91376 0.93123 0.93097 0.92225 0.91299 0.90013 0.90630 0.91310 0.91187 0.88875 0.88948 0.76381 0.88994 0.88485 0.75786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.12 36.01 0.36 -0.56 16 2 C 0.05 0.97 7.22 -82.40 -0.59 0.38 16 3 N -0.30 -6.90 12.58 33.67 0.42 -6.47 16 4 N -0.33 -7.66 3.60 -58.32 -0.21 -7.87 16 5 C 0.26 6.65 5.81 -5.20 -0.03 6.62 16 6 C -0.54 -14.91 9.39 -34.44 -0.32 -15.24 16 7 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 8 C 0.07 1.80 5.46 -17.81 -0.10 1.70 16 9 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 10 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.09 1.88 6.93 -82.26 -0.57 1.31 16 15 C -0.09 -1.52 9.68 36.01 0.35 -1.17 16 16 C -0.27 -4.83 5.35 -105.05 -0.56 -5.39 16 17 C -0.01 -0.15 4.45 -27.88 -0.12 -0.28 16 18 C -0.13 -1.52 5.68 -27.88 -0.16 -1.67 16 19 C 0.52 6.16 7.83 -10.99 -0.09 6.08 16 20 O -0.54 -8.22 15.98 5.56 0.09 -8.13 16 21 N -0.73 -6.89 5.55 -61.48 -0.34 -7.24 16 22 C 0.22 2.01 6.30 -5.19 -0.03 1.97 16 23 C 0.21 1.91 7.51 -156.85 -1.18 0.73 16 24 N -0.53 -4.43 11.19 -11.97 -0.13 -4.56 16 25 C 0.26 1.13 13.13 -90.65 -1.19 -0.06 16 26 N -0.48 -2.19 7.45 29.53 0.22 -1.97 16 27 H 0.44 0.39 8.96 -182.33 -1.63 -1.24 16 28 N -0.29 -2.56 12.80 32.42 0.41 -2.15 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 32 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 33 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 37 H 0.07 1.09 7.14 -51.93 -0.37 0.72 16 38 H 0.07 1.02 7.10 -51.93 -0.37 0.66 16 39 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.40 3.17 8.46 -40.82 -0.35 2.82 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.23 -0.18 8.06 -52.49 -0.42 -0.60 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -36.39 390.32 -9.86 -46.26 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.69 Total: 0.03 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -4.23 Total: -5.59 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 1.11 Total: -54.78 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.39 -9.86 -46.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442307940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.042 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds