Wall clock time and date at job start Tue Mar 31 2020 17:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30838 * 125.89843 * 2 1 4 4 N 1.40086 * 108.20660 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03827 * 180.02562 * 4 3 2 6 6 C 1.50692 * 109.46980 * 90.02500 * 5 4 3 7 7 H 1.08005 * 120.00496 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00281 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99554 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00475 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47291 * 59.99827 * 10 8 6 12 12 H 1.48500 * 109.47207 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46680 * 299.99917 * 10 8 6 14 14 C 1.34952 * 107.92091 * 359.76332 * 4 3 2 15 15 C 1.50702 * 126.12478 * 180.23939 * 14 4 3 16 16 C 1.35312 * 107.74790 * 0.38650 * 14 4 3 17 17 C 1.50706 * 126.03941 * 179.87942 * 16 14 4 18 18 C 1.53002 * 109.46925 * 269.71456 * 17 16 14 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 16 20 20 O 1.21279 * 119.99697 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00141 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99875 * 179.97438 * 21 19 18 23 23 C 1.50702 * 109.47283 * 180.02562 * 22 21 19 24 24 N 1.33245 * 125.52499 * 269.69817 * 23 22 21 25 25 C 1.30831 * 109.82810 * 179.84837 * 24 23 22 26 26 N 1.34434 * 108.07840 * 0.40525 * 25 24 23 27 27 H 0.96997 * 126.82915 * 179.78605 * 26 25 24 28 28 N 1.30709 * 125.52658 * 89.99980 * 23 22 21 29 29 H 1.08999 * 109.46488 * 269.97088 * 1 2 3 30 30 H 1.09001 * 109.47093 * 29.96982 * 1 2 3 31 31 H 1.09000 * 109.46733 * 149.97376 * 1 2 3 32 32 H 1.09004 * 109.47073 * 210.02835 * 5 4 3 33 33 H 1.09005 * 109.47034 * 330.02505 * 5 4 3 34 34 H 0.96999 * 119.99646 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.46971 * 270.17666 * 15 14 4 36 36 H 1.09001 * 109.47110 * 30.17735 * 15 14 4 37 37 H 1.08998 * 109.46919 * 150.17061 * 15 14 4 38 38 H 1.09000 * 109.47318 * 29.70689 * 17 16 14 39 39 H 1.09000 * 109.47161 * 149.71320 * 17 16 14 40 40 H 1.09004 * 109.46930 * 299.99901 * 18 17 16 41 41 H 1.09004 * 109.47059 * 59.99503 * 18 17 16 42 42 H 0.96999 * 120.00043 * 0.02562 * 21 19 18 43 43 H 1.08996 * 109.47565 * 300.00629 * 22 21 19 44 44 H 1.09004 * 109.47374 * 60.00435 * 22 21 19 45 45 H 1.08002 * 125.96458 * 180.12209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6089 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 5.1956 1.7964 1.4206 7 1 4.6304 1.3801 2.2414 8 6 6.2889 2.5977 1.6730 9 7 6.9781 3.1035 0.6735 10 14 6.7922 2.9636 3.4342 11 1 7.1104 1.6923 4.1325 12 1 7.9894 3.8423 3.4346 13 1 5.6765 3.6479 4.1358 14 6 3.6143 -0.7154 0.0044 15 6 4.8351 -1.5989 0.0107 16 6 2.3272 -1.1330 -0.0007 17 6 1.8600 -2.5658 -0.0005 18 6 1.7015 -3.0508 -1.4429 19 6 1.2337 -4.4833 -1.4427 20 8 1.0460 -5.0597 -0.3923 21 7 1.0239 -5.1238 -2.6099 22 6 0.5696 -6.5166 -2.6096 23 6 0.4134 -6.9943 -4.0304 24 7 -0.6995 -6.9086 -4.7580 25 6 -0.4921 -7.4130 -5.9473 26 7 0.7792 -7.8470 -6.0004 27 1 1.2179 -8.2703 -6.7548 28 7 1.3460 -7.5649 -4.7467 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 5.6091 0.9987 -0.5151 33 1 4.5561 2.4338 -0.5130 34 1 7.7471 3.6675 0.8510 35 1 5.1338 -1.8131 -1.0154 36 1 5.6489 -1.0904 0.5275 37 1 4.6054 -2.5322 0.5247 38 1 2.5936 -3.1872 0.5131 39 1 0.9013 -2.6353 0.5136 40 1 0.9678 -2.4294 -1.9566 41 1 2.6602 -2.9812 -1.9570 42 1 1.1743 -4.6629 -3.4500 43 1 1.3033 -7.1380 -2.0963 44 1 -0.3888 -6.5861 -2.0951 45 1 -1.2171 -7.4746 -6.7454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442307940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:30 Heat of formation + Delta-G solvation = 79.595417 kcal Electronic energy + Delta-G solvation = -27061.116977 eV Core-core repulsion = 23115.437651 eV Total energy + Delta-G solvation = -3945.679326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -43.15353 -42.12658 -40.61195 -36.29362 -35.99930 -34.82047 -34.16250 -33.50923 -32.46649 -31.69957 -30.48958 -28.89333 -27.62327 -27.45515 -25.15796 -23.85804 -23.62265 -21.67789 -21.29956 -20.28487 -20.10948 -19.34809 -18.81420 -18.04157 -17.28945 -17.18939 -16.75024 -16.28936 -16.10015 -16.03797 -15.86778 -15.15116 -14.88353 -14.55594 -14.38481 -14.20295 -14.03054 -14.00398 -13.72237 -13.46004 -13.31638 -13.21080 -13.17391 -13.12125 -12.83963 -12.73675 -12.60579 -12.54423 -12.19930 -11.83223 -11.71972 -11.32703 -11.14467 -11.13103 -11.00863 -10.74852 -10.68989 -10.15094 -9.81210 -9.00495 -8.34404 -6.52300 0.52344 1.19663 1.36290 1.37834 1.46910 1.59806 1.70137 1.76013 1.95047 1.96780 2.33477 2.49233 2.94694 3.07130 3.61131 3.80724 3.93317 3.98478 4.16578 4.27802 4.30279 4.36542 4.52265 4.57442 4.64103 4.72615 4.75834 4.80428 4.85547 4.87644 4.90625 4.99938 5.08013 5.14360 5.17825 5.20067 5.29206 5.40688 5.47495 5.50929 5.59196 5.80913 6.08192 6.21483 6.33615 6.49801 6.63333 7.02502 7.14073 7.19028 7.25036 8.71199 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.001976 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.489801 B =14163.628855 C =14548.794158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.276 3.724 6 C -0.554 4.554 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.271 1.271 13 H -0.276 1.276 14 C 0.078 3.922 15 C -0.087 4.087 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.123 4.123 19 C 0.524 3.476 20 O -0.574 6.574 21 N -0.716 5.716 22 C 0.219 3.781 23 C 0.202 3.798 24 N -0.569 5.569 25 C 0.280 3.720 26 N -0.470 5.470 27 H 0.460 0.540 28 N -0.326 5.326 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.019 0.981 34 H 0.274 0.726 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.412 0.588 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.893 -23.228 -16.423 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.136 5.136 5 C 0.157 3.843 6 C -0.592 4.592 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.190 1.190 12 H -0.196 1.196 13 H -0.201 1.201 14 C -0.052 4.052 15 C -0.145 4.145 16 C -0.269 4.269 17 C -0.043 4.043 18 C -0.163 4.163 19 C 0.312 3.688 20 O -0.453 6.453 21 N -0.370 5.370 22 C 0.093 3.907 23 C -0.081 4.081 24 N -0.298 5.298 25 C -0.018 4.018 26 N -0.190 5.190 27 H 0.309 0.691 28 N -0.158 5.158 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.247 0.753 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -13.295 -22.135 -15.338 30.033 hybrid contribution 0.844 -0.182 -0.277 0.906 sum -12.451 -22.317 -15.615 29.949 Atomic orbital electron populations 1.20214 0.84673 1.03881 1.03356 1.22799 0.98134 0.90191 0.99930 1.77200 0.87840 1.25064 1.27328 1.48999 1.05291 1.05143 1.54208 1.19106 0.79020 0.88753 0.97462 1.21411 1.13422 1.32469 0.91869 0.93484 1.25756 0.95449 0.94474 1.02287 1.69999 1.19352 1.33216 1.33039 0.85420 0.77799 0.78679 0.78692 1.18993 1.19586 1.20148 1.21460 0.98226 0.84669 1.00804 1.20480 0.92376 0.97816 1.03831 1.19723 0.90330 0.96548 1.20258 1.19383 1.01523 0.88302 0.95139 1.21627 1.04297 0.90788 0.99617 1.20998 0.75850 0.89220 0.82685 1.90703 1.52891 1.69244 1.32460 1.45822 1.69071 1.12756 1.09358 1.19257 1.01888 0.82805 0.86778 1.24065 0.87632 0.98533 0.97840 1.70452 1.28211 1.26334 1.04809 1.27123 0.87258 0.90729 0.96693 1.48153 1.11097 1.47182 1.12593 0.69068 1.77995 1.22418 1.22331 0.93065 0.90334 0.91161 0.88297 0.93584 0.96315 0.91736 0.88944 0.92372 0.88202 0.91604 0.90882 0.87220 0.87816 0.75283 0.89573 0.88982 0.70989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.12 71.24 0.72 -0.96 16 2 C 0.05 2.05 7.22 43.10 0.31 2.36 16 3 N -0.35 -16.64 12.58 -47.38 -0.60 -17.24 16 4 N -0.36 -17.30 3.60 -338.42 -1.22 -18.51 16 5 C 0.28 14.96 5.81 85.63 0.50 15.46 16 6 C -0.55 -31.88 9.39 25.60 0.24 -31.63 16 7 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 8 C 0.02 1.19 5.46 84.65 0.46 1.66 16 9 N -0.92 -52.88 13.29 21.45 0.28 -52.60 16 10 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 C 0.08 3.12 6.93 41.40 0.29 3.41 16 15 C -0.09 -2.85 9.68 71.24 0.69 -2.16 16 16 C -0.26 -8.96 5.35 -20.14 -0.11 -9.07 16 17 C 0.00 -0.12 4.45 29.85 0.13 0.01 16 18 C -0.12 -2.53 5.68 29.85 0.17 -2.37 16 19 C 0.52 11.56 7.83 87.66 0.69 12.25 16 20 O -0.57 -16.99 15.98 -3.03 -0.05 -17.03 16 21 N -0.72 -12.47 5.55 -466.80 -2.59 -15.06 16 22 C 0.22 3.93 6.30 85.63 0.54 4.47 16 23 C 0.20 3.43 7.51 138.63 1.04 4.48 16 24 N -0.57 -8.45 11.19 -191.80 -2.15 -10.59 16 25 C 0.28 1.58 13.13 180.36 2.37 3.94 16 26 N -0.47 -3.19 7.45 -60.49 -0.45 -3.64 16 27 H 0.46 -0.35 8.96 -213.10 -1.91 -2.26 16 28 N -0.33 -5.26 12.80 -51.33 -0.66 -5.92 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 2.03 7.92 -2.39 -0.02 2.01 16 32 H 0.05 2.48 7.68 -2.38 -0.02 2.46 16 33 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 37 H 0.10 2.73 7.14 -2.39 -0.02 2.71 16 38 H 0.07 1.84 7.10 -2.39 -0.02 1.82 16 39 H 0.07 1.96 7.88 -2.39 -0.02 1.94 16 40 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 42 H 0.41 5.71 8.46 -92.71 -0.78 4.92 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.27 -1.66 8.06 -2.91 -0.02 -1.68 16 Total: -1.00 -82.02 390.32 0.99 -81.03 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -1.65 Total: 11.62 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 8.04 Total: 1.84 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -7.37 Total: -123.56 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.05 Total: -17.03 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -82.02 0.99 -81.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442307940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.629 kcal (2) G-P(sol) polarization free energy of solvation -82.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds