Wall clock time and date at job start Tue Mar 31 2020 18:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47138 * 120.00376 * 2 1 3 5 5 H 1.08004 * 119.99912 * 120.00002 * 4 2 1 6 6 C 1.37875 * 119.99904 * 299.99299 * 4 2 1 7 7 N 1.31513 * 120.00172 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99746 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47177 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46896 * 120.00542 * 8 6 4 11 11 H 1.48500 * 109.46869 * 240.00239 * 8 6 4 12 12 N 1.46502 * 109.47009 * 240.00097 * 2 1 3 13 13 C 1.34778 * 119.99703 * 84.99800 * 12 2 1 14 14 O 1.21279 * 120.00212 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99920 * 180.02562 * 13 12 2 16 16 C 1.52995 * 109.47383 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47597 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47532 * 179.97438 * 17 16 15 19 19 N 1.46492 * 109.47501 * 179.97438 * 18 17 16 20 20 C 1.36319 * 126.28134 * 265.00168 * 19 18 17 21 21 N 1.30139 * 109.98121 * 179.97438 * 20 19 18 22 22 C 1.35474 * 109.43978 * 359.97438 * 21 20 19 23 23 C 1.37203 * 126.28024 * 84.99691 * 19 18 17 24 24 N 1.32892 * 134.91178 * 0.02562 * 23 19 18 25 25 C 1.31651 * 120.63683 * 179.97438 * 24 23 19 26 26 N 1.32037 * 122.46350 * 0.02562 * 25 24 23 27 27 C 1.32914 * 121.19189 * 359.97438 * 26 25 24 28 28 N 1.38395 * 120.76956 * 179.73041 * 27 26 25 29 29 H 1.09007 * 109.46938 * 299.99261 * 1 2 3 30 30 H 1.09000 * 109.47640 * 59.99623 * 1 2 3 31 31 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00390 * 179.97438 * 7 6 4 33 33 H 0.96994 * 120.00168 * 265.00317 * 12 2 1 34 34 H 1.08999 * 109.47552 * 59.99682 * 15 13 12 35 35 H 1.08999 * 109.46845 * 299.99996 * 15 13 12 36 36 H 1.08999 * 109.47336 * 59.99182 * 16 15 13 37 37 H 1.08999 * 109.46827 * 299.99640 * 16 15 13 38 38 H 1.08994 * 109.47054 * 59.99167 * 17 16 15 39 39 H 1.08999 * 109.46680 * 299.99658 * 17 16 15 40 40 H 1.09007 * 109.46993 * 59.99679 * 18 17 16 41 41 H 1.09001 * 109.46977 * 300.00250 * 18 17 16 42 42 H 1.08003 * 125.01353 * 0.03470 * 20 19 18 43 43 H 1.07996 * 118.76536 * 179.97438 * 25 24 23 44 44 H 0.97001 * 120.00101 * 0.02562 * 28 27 26 45 45 H 0.97001 * 119.99361 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6035 8 14 2.3227 -1.1198 4.0079 9 1 3.1484 -2.2859 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1680 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6487 -0.7287 -3.5878 16 6 2.7008 0.2546 -4.7588 17 6 3.2096 -0.4668 -6.0084 18 6 3.2612 0.5163 -7.1795 19 7 3.7489 -0.1743 -8.3759 20 6 5.0380 -0.2094 -8.8178 21 7 5.1147 -0.9134 -9.9096 22 6 3.8834 -1.3741 -10.2366 23 6 2.9921 -0.9046 -9.2570 24 7 1.7047 -1.2209 -9.3500 25 6 1.2664 -1.9627 -10.3454 26 7 2.0652 -2.4260 -11.2892 27 6 3.3677 -2.1616 -11.2797 28 7 4.1978 -2.6564 -12.2704 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7084 1.1608 3.4845 33 1 2.2489 -1.6317 -1.1527 34 1 1.9759 -1.5505 -3.8327 35 1 3.6478 -1.1212 -3.3987 36 1 3.3739 1.0762 -4.5137 37 1 1.7019 0.6475 -4.9480 38 1 2.5362 -1.2881 -6.2532 39 1 4.2085 -0.8600 -5.8195 40 1 3.9344 1.3379 -6.9348 41 1 2.2621 0.9092 -7.3683 42 1 5.8727 0.2748 -8.3329 43 1 0.2143 -2.2019 -10.3913 44 1 3.8306 -3.2027 -12.9828 45 1 5.1468 -2.4561 -12.2527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443779267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:22 Heat of formation + Delta-G solvation = 44.081064 kcal Electronic energy + Delta-G solvation = -26778.461177 eV Core-core repulsion = 22831.241833 eV Total energy + Delta-G solvation = -3947.219344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82577 -39.59820 -38.96671 -36.39910 -35.76926 -34.78429 -33.25996 -32.37441 -32.24392 -29.86105 -29.56637 -28.40755 -25.30571 -25.02114 -24.53741 -23.66802 -21.91788 -21.01911 -20.67225 -19.37822 -18.87556 -18.65343 -17.14736 -17.07751 -16.59657 -16.31106 -15.87607 -15.63938 -15.22749 -15.08615 -14.66879 -14.44734 -14.39581 -14.17297 -14.02286 -13.20637 -12.84255 -12.74675 -12.44292 -12.35678 -12.16329 -11.77360 -11.69509 -11.45585 -11.36236 -11.08542 -10.95984 -10.76349 -10.68823 -10.67693 -10.31345 -10.26124 -10.25252 -9.58496 -9.35471 -9.05877 -8.99314 -8.56611 -8.25124 -7.90802 -6.13852 -4.23140 0.57032 1.07840 1.98620 2.40045 2.92837 3.22064 3.29853 3.32439 3.41246 3.64879 3.68590 3.79917 4.03998 4.14027 4.35087 4.41854 4.50014 4.60036 4.73009 4.91857 5.02261 5.17662 5.19858 5.26947 5.39690 5.48898 5.62509 5.67307 5.72983 5.87035 6.08806 6.16519 6.29286 6.36238 6.55262 6.77351 6.81868 6.96248 7.14794 7.24929 7.33883 7.46285 7.55741 7.68704 7.90757 8.02136 8.14271 8.67225 8.77319 9.13832 9.44799 10.92138 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.027896 B = 0.001681 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.496120 B =16656.166230 C =16816.249765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.499 3.501 14 O -0.558 6.558 15 C -0.141 4.141 16 C -0.097 4.097 17 C -0.134 4.134 18 C 0.110 3.890 19 N -0.468 5.468 20 C 0.252 3.748 21 N -0.468 5.468 22 C -0.113 4.113 23 C 0.302 3.698 24 N -0.554 5.554 25 C 0.361 3.639 26 N -0.595 5.595 27 C 0.506 3.494 28 N -0.820 5.820 29 H 0.090 0.910 30 H 0.014 0.986 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.223 0.777 43 H 0.204 0.796 44 H 0.409 0.591 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 -5.577 -27.225 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.438 6.438 15 C -0.181 4.181 16 C -0.136 4.136 17 C -0.172 4.172 18 C -0.011 4.011 19 N -0.159 5.159 20 C -0.034 4.034 21 N -0.187 5.187 22 C -0.240 4.240 23 C 0.060 3.940 24 N -0.279 5.279 25 C 0.069 3.931 26 N -0.325 5.325 27 C 0.252 3.748 28 N -0.363 5.363 29 H 0.108 0.892 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.239 0.761 43 H 0.220 0.780 44 H 0.239 0.761 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.595 -4.848 -27.393 28.590 hybrid contribution 0.765 -0.719 1.279 1.654 sum 7.360 -5.567 -26.115 27.697 Atomic orbital electron populations 1.22072 0.98506 0.99067 1.00876 1.18739 0.91029 0.93983 0.80177 0.93433 1.21265 1.32355 1.13173 0.90368 0.92065 1.24900 0.94832 0.94965 0.99092 1.69912 1.35907 1.22499 1.23767 0.86394 0.78610 0.79510 0.82577 1.19761 1.20878 1.20863 1.46552 1.65053 1.13536 1.10703 1.20463 0.78682 0.87575 0.84893 1.90646 1.51592 1.16257 1.85320 1.21650 1.02771 0.99570 0.94138 1.21192 1.02928 0.97828 0.91652 1.21990 1.02588 0.98664 0.93973 1.22058 1.02398 0.94986 0.81631 1.45301 1.07495 1.41401 1.21719 1.25392 0.85913 0.99234 0.92894 1.70210 1.21673 1.13485 1.13335 1.19693 0.92650 1.10441 1.01224 1.18763 0.90270 0.94454 0.90475 1.67295 1.12510 1.20498 1.27557 1.24465 0.99412 0.86657 0.82535 1.68039 1.01809 1.31432 1.31262 1.17791 0.87679 0.84864 0.84468 1.42203 1.10497 1.56311 1.27302 0.89183 0.96676 0.95523 0.92628 0.77961 0.89564 0.89563 0.90793 0.90731 0.90991 0.91248 0.88068 0.88335 0.76122 0.77982 0.76074 0.75087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.67 2.56 -69.08 -0.18 6.50 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.71 -14.55 5.07 -54.93 -0.28 -14.83 16 13 C 0.50 9.50 7.79 -10.99 -0.09 9.42 16 14 O -0.56 -12.91 15.64 5.56 0.09 -12.82 16 15 C -0.14 -1.81 5.70 -27.89 -0.16 -1.97 16 16 C -0.10 -1.09 4.50 -26.73 -0.12 -1.22 16 17 C -0.13 -1.16 5.54 -26.73 -0.15 -1.31 16 18 C 0.11 0.85 6.16 -4.05 -0.02 0.83 16 19 N -0.47 -4.32 2.79 -117.63 -0.33 -4.64 16 20 C 0.25 2.00 12.51 -89.50 -1.12 0.88 16 21 N -0.47 -4.77 11.28 -11.85 -0.13 -4.91 16 22 C -0.11 -1.27 7.17 -84.55 -0.61 -1.88 16 23 C 0.30 3.51 8.05 -155.80 -1.25 2.25 16 24 N -0.55 -6.47 10.47 -13.90 -0.15 -6.61 16 25 C 0.36 3.54 12.25 -92.07 -1.13 2.41 16 26 N -0.60 -6.10 10.45 -13.61 -0.14 -6.24 16 27 C 0.51 5.10 7.87 -154.65 -1.22 3.88 16 28 N -0.82 -5.25 9.05 31.37 0.28 -4.96 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.84 8.54 -40.82 -0.35 6.49 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.54 8.13 -51.93 -0.42 0.12 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.22 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.41 1.79 8.95 -40.82 -0.37 1.43 16 45 H 0.42 2.19 8.85 -40.82 -0.36 1.83 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -35.18 383.80 -11.75 -46.94 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.39 Total: 7.24 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -6.09 Total: 3.75 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -0.12 Total: -66.43 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.18 -11.75 -46.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443779267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.017 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds