Wall clock time and date at job start Tue Mar 31 2020 18:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47138 * 120.00376 * 2 1 3 5 5 H 1.08004 * 119.99912 * 120.00002 * 4 2 1 6 6 C 1.37875 * 119.99904 * 299.99299 * 4 2 1 7 7 N 1.31513 * 120.00172 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99746 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47177 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46896 * 120.00542 * 8 6 4 11 11 H 1.48500 * 109.46869 * 240.00239 * 8 6 4 12 12 N 1.46502 * 109.47009 * 240.00097 * 2 1 3 13 13 C 1.34778 * 119.99703 * 84.99800 * 12 2 1 14 14 O 1.21279 * 120.00212 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99920 * 180.02562 * 13 12 2 16 16 C 1.52995 * 109.47383 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47597 * 180.02562 * 16 15 13 18 18 C 1.52994 * 109.47532 * 179.97438 * 17 16 15 19 19 N 1.46492 * 109.47501 * 179.97438 * 18 17 16 20 20 C 1.36319 * 126.28134 * 265.00168 * 19 18 17 21 21 N 1.30139 * 109.98121 * 179.97438 * 20 19 18 22 22 C 1.35474 * 109.43978 * 359.97438 * 21 20 19 23 23 C 1.37203 * 126.28024 * 84.99691 * 19 18 17 24 24 N 1.32892 * 134.91178 * 0.02562 * 23 19 18 25 25 C 1.31651 * 120.63683 * 179.97438 * 24 23 19 26 26 N 1.32037 * 122.46350 * 0.02562 * 25 24 23 27 27 C 1.32914 * 121.19189 * 359.97438 * 26 25 24 28 28 N 1.38395 * 120.76956 * 179.73041 * 27 26 25 29 29 H 1.09007 * 109.46938 * 299.99261 * 1 2 3 30 30 H 1.09000 * 109.47640 * 59.99623 * 1 2 3 31 31 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00390 * 179.97438 * 7 6 4 33 33 H 0.96994 * 120.00168 * 265.00317 * 12 2 1 34 34 H 1.08999 * 109.47552 * 59.99682 * 15 13 12 35 35 H 1.08999 * 109.46845 * 299.99996 * 15 13 12 36 36 H 1.08999 * 109.47336 * 59.99182 * 16 15 13 37 37 H 1.08999 * 109.46827 * 299.99640 * 16 15 13 38 38 H 1.08994 * 109.47054 * 59.99167 * 17 16 15 39 39 H 1.08999 * 109.46680 * 299.99658 * 17 16 15 40 40 H 1.09007 * 109.46993 * 59.99679 * 18 17 16 41 41 H 1.09001 * 109.46977 * 300.00250 * 18 17 16 42 42 H 1.08003 * 125.01353 * 0.03470 * 20 19 18 43 43 H 1.07996 * 118.76536 * 179.97438 * 25 24 23 44 44 H 0.97001 * 120.00101 * 0.02562 * 28 27 26 45 45 H 0.97001 * 119.99361 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6035 8 14 2.3227 -1.1198 4.0079 9 1 3.1484 -2.2859 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1680 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6487 -0.7287 -3.5878 16 6 2.7008 0.2546 -4.7588 17 6 3.2096 -0.4668 -6.0084 18 6 3.2612 0.5163 -7.1795 19 7 3.7489 -0.1743 -8.3759 20 6 5.0380 -0.2094 -8.8178 21 7 5.1147 -0.9134 -9.9096 22 6 3.8834 -1.3741 -10.2366 23 6 2.9921 -0.9046 -9.2570 24 7 1.7047 -1.2209 -9.3500 25 6 1.2664 -1.9627 -10.3454 26 7 2.0652 -2.4260 -11.2892 27 6 3.3677 -2.1616 -11.2797 28 7 4.1978 -2.6564 -12.2704 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7084 1.1608 3.4845 33 1 2.2489 -1.6317 -1.1527 34 1 1.9759 -1.5505 -3.8327 35 1 3.6478 -1.1212 -3.3987 36 1 3.3739 1.0762 -4.5137 37 1 1.7019 0.6475 -4.9480 38 1 2.5362 -1.2881 -6.2532 39 1 4.2085 -0.8600 -5.8195 40 1 3.9344 1.3379 -6.9348 41 1 2.2621 0.9092 -7.3683 42 1 5.8727 0.2748 -8.3329 43 1 0.2143 -2.2019 -10.3913 44 1 3.8306 -3.2027 -12.9828 45 1 5.1468 -2.4561 -12.2527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443779267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:21 Heat of formation + Delta-G solvation = 21.391745 kcal Electronic energy + Delta-G solvation = -26779.445060 eV Core-core repulsion = 22831.241833 eV Total energy + Delta-G solvation = -3948.203227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.49606 -40.57275 -40.25057 -37.22626 -36.73702 -36.31601 -34.33074 -34.08120 -32.94996 -31.30765 -30.24209 -29.73251 -27.34977 -25.98857 -25.19256 -24.43592 -23.18383 -22.05175 -21.67365 -21.02836 -19.55556 -19.34186 -18.81873 -17.76110 -17.45949 -17.20434 -17.10037 -16.94909 -16.82369 -15.97621 -15.73490 -15.53962 -15.28537 -15.03923 -14.89281 -14.65092 -14.39361 -13.95578 -13.62231 -13.55455 -13.22495 -13.04475 -12.90328 -12.84472 -12.68164 -12.50570 -12.30163 -12.25054 -12.24559 -12.11313 -11.58141 -11.40030 -11.09181 -10.91767 -10.69670 -10.55375 -10.27275 -10.09508 -9.71024 -8.91660 -8.17896 -6.35408 -0.10332 0.32951 1.34758 1.43964 1.44961 1.56982 1.75507 1.89486 2.33517 2.36368 2.69512 2.91577 3.05114 3.12494 3.19059 3.44672 3.79014 3.82638 3.90945 3.97212 4.16742 4.19474 4.31970 4.47178 4.57834 4.65497 4.72336 4.80827 4.82429 4.92627 4.96930 5.00389 5.10400 5.26047 5.40821 5.44602 5.45290 5.62974 5.70590 5.72497 5.91887 5.97042 6.10855 6.18752 6.65993 6.73044 6.73616 7.01781 7.32841 7.33058 7.61977 8.88575 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.027896 B = 0.001681 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.496120 B =16656.166230 C =16816.249765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.267 3.733 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.710 5.710 13 C 0.492 3.508 14 O -0.604 6.604 15 C -0.128 4.128 16 C -0.091 4.091 17 C -0.117 4.117 18 C 0.111 3.889 19 N -0.468 5.468 20 C 0.262 3.738 21 N -0.489 5.489 22 C -0.132 4.132 23 C 0.276 3.724 24 N -0.577 5.577 25 C 0.354 3.646 26 N -0.605 5.605 27 C 0.493 3.507 28 N -0.804 5.804 29 H 0.065 0.935 30 H 0.011 0.989 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.085 0.915 42 H 0.265 0.735 43 H 0.231 0.769 44 H 0.419 0.581 45 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 -7.240 -27.759 30.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.358 5.358 13 C 0.281 3.719 14 O -0.487 6.487 15 C -0.167 4.167 16 C -0.130 4.130 17 C -0.156 4.156 18 C -0.009 4.009 19 N -0.159 5.159 20 C -0.024 4.024 21 N -0.208 5.208 22 C -0.259 4.259 23 C 0.034 3.966 24 N -0.303 5.303 25 C 0.063 3.937 26 N -0.336 5.336 27 C 0.238 3.762 28 N -0.347 5.347 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.149 0.851 41 H 0.104 0.896 42 H 0.281 0.719 43 H 0.247 0.753 44 H 0.251 0.749 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.407 -6.561 -27.981 29.945 hybrid contribution 0.221 -0.156 1.386 1.413 sum 8.628 -6.717 -26.595 28.755 Atomic orbital electron populations 1.21895 0.98506 0.99351 0.99483 1.18328 0.91021 0.91961 0.82319 0.98445 1.21593 1.32440 1.13483 0.90835 0.90832 1.25826 0.94922 0.95610 1.02415 1.70061 1.37064 1.24018 1.24523 0.85281 0.78064 0.78514 0.78366 1.18314 1.20959 1.20527 1.46340 1.65294 1.14266 1.09950 1.21574 0.77273 0.87183 0.85914 1.90626 1.53320 1.18626 1.86097 1.21662 1.04387 0.99657 0.91019 1.21108 1.02040 0.97629 0.92227 1.21790 1.02901 0.98015 0.92845 1.22101 1.02703 0.95296 0.80827 1.45444 1.07687 1.41119 1.21657 1.26328 0.86282 0.97822 0.92018 1.70210 1.21281 1.14697 1.14611 1.19935 0.93156 1.11058 1.01709 1.19140 0.90598 0.95341 0.91476 1.67333 1.12908 1.21545 1.28489 1.25073 1.00584 0.86029 0.82056 1.68110 1.02021 1.31894 1.31536 1.18059 0.88037 0.85036 0.85075 1.42168 1.10508 1.55479 1.26570 0.91621 0.96973 0.94188 0.92580 0.76016 0.87454 0.86624 0.91104 0.92606 0.92327 0.89540 0.85121 0.89608 0.71903 0.75342 0.74913 0.74377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 13.84 2.56 44.25 0.11 13.96 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 4 C -0.55 -28.70 8.73 25.60 0.22 -28.48 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 8 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.71 -28.64 5.07 -446.09 -2.26 -30.90 16 13 C 0.49 18.50 7.79 87.66 0.68 19.19 16 14 O -0.60 -28.52 15.64 -3.03 -0.05 -28.56 16 15 C -0.13 -2.97 5.70 29.85 0.17 -2.80 16 16 C -0.09 -1.90 4.50 30.59 0.14 -1.76 16 17 C -0.12 -1.75 5.54 30.59 0.17 -1.59 16 18 C 0.11 1.50 6.16 86.38 0.53 2.04 16 19 N -0.47 -7.81 2.79 -526.06 -1.47 -9.27 16 20 C 0.26 3.49 12.51 179.96 2.25 5.74 16 21 N -0.49 -9.22 11.28 -191.40 -2.16 -11.38 16 22 C -0.13 -2.87 7.17 39.69 0.28 -2.59 16 23 C 0.28 6.23 8.05 133.86 1.08 7.31 16 24 N -0.58 -13.38 10.47 -197.89 -2.07 -15.45 16 25 C 0.35 6.83 12.25 180.85 2.22 9.05 16 26 N -0.60 -12.14 10.45 -196.97 -2.06 -14.20 16 27 C 0.49 9.68 7.87 133.45 1.05 10.73 16 28 N -0.80 -9.58 9.05 -54.65 -0.49 -10.07 16 29 H 0.07 3.67 6.07 -2.38 -0.01 3.66 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.40 13.54 8.54 -92.71 -0.79 12.75 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 35 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.13 0.99 8.13 -2.38 -0.02 0.97 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.27 0.74 8.06 -2.91 -0.02 0.71 16 43 H 0.23 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.42 3.25 8.95 -92.71 -0.83 2.42 16 45 H 0.42 4.02 8.85 -92.71 -0.82 3.19 16 Total: -1.00 -79.12 383.80 0.35 -78.77 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -1.39 Total: 24.00 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 10.02 Total: 25.76 kcal Atomic # 7 Polarization: -133.46 SS G_CDS: -10.27 Total: -143.73 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -79.12 0.35 -78.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443779267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.166 kcal (2) G-P(sol) polarization free energy of solvation -79.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds