Wall clock time and date at job start Tue Mar 31 2020 18:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47523 * 2 1 4 4 C 1.50701 * 109.47041 * 240.00303 * 2 1 3 5 5 H 1.08002 * 120.00084 * 240.00546 * 4 2 1 6 6 C 1.37877 * 120.00080 * 60.00068 * 4 2 1 7 7 N 1.31515 * 119.99876 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00190 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47130 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47184 * 119.99611 * 8 6 4 11 11 H 1.48494 * 109.46901 * 239.99900 * 8 6 4 12 12 N 1.46502 * 109.47346 * 120.00380 * 2 1 3 13 13 C 1.34776 * 119.99986 * 274.99889 * 12 2 1 14 14 O 1.21283 * 119.99736 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99986 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.46790 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46947 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.46947 * 179.97438 * 17 16 15 19 19 N 1.46502 * 109.46790 * 179.97438 * 18 17 16 20 20 C 1.36319 * 126.27641 * 265.02213 * 19 18 17 21 21 N 1.30144 * 109.97803 * 180.02562 * 20 19 18 22 22 C 1.35471 * 109.44118 * 359.97438 * 21 20 19 23 23 C 1.37201 * 126.28160 * 85.02248 * 19 18 17 24 24 N 1.32888 * 134.91593 * 359.97438 * 23 19 18 25 25 C 1.31647 * 120.63699 * 180.02562 * 24 23 19 26 26 N 1.32044 * 122.46496 * 359.97438 * 25 24 23 27 27 C 1.32907 * 121.19258 * 0.02562 * 26 25 24 28 28 N 1.38384 * 120.77168 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.46993 * 299.99648 * 1 2 3 30 30 H 1.09003 * 109.47490 * 59.99599 * 1 2 3 31 31 H 1.08995 * 109.47523 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00063 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99650 * 94.99958 * 12 2 1 34 34 H 1.08992 * 109.46896 * 59.99949 * 15 13 12 35 35 H 1.09000 * 109.46703 * 299.99848 * 15 13 12 36 36 H 1.08992 * 109.47545 * 60.00222 * 16 15 13 37 37 H 1.09000 * 109.47272 * 299.99374 * 16 15 13 38 38 H 1.08997 * 109.47396 * 59.99118 * 17 16 15 39 39 H 1.09000 * 109.46489 * 299.99688 * 17 16 15 40 40 H 1.08992 * 109.47545 * 60.00056 * 18 17 16 41 41 H 1.09000 * 109.47272 * 299.99209 * 18 17 16 42 42 H 1.07997 * 125.01216 * 0.02562 * 20 19 18 43 43 H 1.08007 * 118.76543 * 180.28328 * 25 24 23 44 44 H 0.96996 * 120.00498 * 0.02562 * 28 27 26 45 45 H 0.96999 * 119.99890 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 3.1463 -2.2868 -3.6040 10 1 1.1659 -1.5864 -4.8161 11 1 3.1464 -0.1871 -4.8165 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6490 -0.7290 3.5877 16 6 2.7000 0.2539 4.7590 17 6 3.2101 -0.4674 6.0082 18 6 3.2617 0.5157 7.1794 19 7 3.7495 -0.1751 8.3757 20 6 2.9819 -0.7386 9.3511 21 7 3.7423 -1.2662 10.2661 22 6 5.0425 -1.0760 9.9366 23 6 5.0628 -0.3736 8.7197 24 7 6.2333 -0.0592 8.1749 25 6 7.3605 -0.3996 8.7638 26 7 7.3917 -1.0593 9.9072 27 6 6.2714 -1.4167 10.5265 28 7 6.3143 -2.1084 11.7243 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7087 1.1615 -3.4843 33 1 2.2490 -1.6319 1.1524 34 1 3.6480 -1.1215 3.3985 35 1 1.9760 -1.5508 3.8324 36 1 1.7007 0.6461 4.9481 37 1 3.3727 1.0760 4.5145 38 1 4.2094 -0.8593 5.8189 39 1 2.5377 -1.2896 6.2529 40 1 2.2626 0.9080 7.3689 41 1 3.9343 1.3377 6.9345 42 1 1.9020 -0.7460 9.3629 43 1 8.2947 -0.1246 8.2966 44 1 7.1689 -2.3377 12.1217 45 1 5.4897 -2.3634 12.1669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443779269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:25 Heat of formation + Delta-G solvation = 21.367652 kcal Electronic energy + Delta-G solvation = -26779.820167 eV Core-core repulsion = 22831.615896 eV Total energy + Delta-G solvation = -3948.204271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.49545 -40.57153 -40.25096 -37.22568 -36.73744 -36.31653 -34.33115 -34.08090 -32.95095 -31.30562 -30.24171 -29.73089 -27.34776 -25.98812 -25.19301 -24.43597 -23.18285 -22.05077 -21.67321 -21.02751 -19.55601 -19.34305 -18.81960 -17.75899 -17.46542 -17.21050 -17.09154 -16.95507 -16.81565 -15.96233 -15.75777 -15.55519 -15.26034 -15.06215 -14.87000 -14.64206 -14.39871 -13.97427 -13.61252 -13.54359 -13.22900 -13.05111 -12.87398 -12.84092 -12.73080 -12.47230 -12.30501 -12.25537 -12.24279 -12.11537 -11.58138 -11.40057 -11.09132 -10.91727 -10.69749 -10.55398 -10.27275 -10.09499 -9.70881 -8.91666 -8.18231 -6.35617 -0.10352 0.32945 1.34820 1.43449 1.44651 1.56529 1.75609 1.89486 2.33517 2.36172 2.69432 2.91516 3.05123 3.12133 3.19003 3.44720 3.78987 3.82757 3.90933 3.97216 4.16735 4.19586 4.32022 4.47239 4.57769 4.65574 4.72819 4.80638 4.83035 4.93409 4.96874 5.00515 5.10631 5.26137 5.40858 5.44986 5.45233 5.62958 5.71121 5.72542 5.92212 5.97157 6.11233 6.18759 6.66044 6.73062 6.73408 7.01776 7.32820 7.32834 7.61965 8.88172 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024920 B = 0.001723 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.308040 B =16242.864540 C =16849.519220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.267 3.733 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.710 5.710 13 C 0.492 3.508 14 O -0.604 6.604 15 C -0.127 4.127 16 C -0.091 4.091 17 C -0.117 4.117 18 C 0.111 3.889 19 N -0.468 5.468 20 C 0.262 3.738 21 N -0.489 5.489 22 C -0.131 4.131 23 C 0.275 3.725 24 N -0.577 5.577 25 C 0.353 3.647 26 N -0.605 5.605 27 C 0.493 3.507 28 N -0.804 5.804 29 H 0.013 0.987 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.266 0.734 43 H 0.230 0.770 44 H 0.419 0.581 45 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -7.701 28.262 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.163 3.837 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.358 5.358 13 C 0.281 3.719 14 O -0.487 6.487 15 C -0.167 4.167 16 C -0.130 4.130 17 C -0.156 4.156 18 C -0.009 4.009 19 N -0.159 5.159 20 C -0.024 4.024 21 N -0.208 5.208 22 C -0.258 4.258 23 C 0.034 3.966 24 N -0.303 5.303 25 C 0.062 3.938 26 N -0.336 5.336 27 C 0.238 3.762 28 N -0.347 5.347 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.281 0.719 43 H 0.246 0.754 44 H 0.251 0.749 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.159 -6.855 28.315 30.000 hybrid contribution -0.170 -0.264 -1.288 1.325 sum 6.988 -7.119 27.027 28.810 Atomic orbital electron populations 1.21878 0.98265 0.99430 0.99540 1.18330 0.91191 0.91868 0.82290 0.98615 1.21595 1.32436 1.13479 0.90896 0.90924 1.25819 0.94926 0.95623 1.02391 1.70062 1.37052 1.23982 1.24521 0.85288 0.78084 0.78500 0.78400 1.18388 1.20387 1.21041 1.46342 1.65289 1.14272 1.09943 1.21576 0.77241 0.87181 0.85950 1.90627 1.53348 1.18572 1.86127 1.21663 1.04091 0.99887 0.91078 1.21110 1.02294 0.97300 0.92300 1.21794 1.02172 0.98529 0.93062 1.22103 1.02775 0.94730 0.81312 1.45448 1.02525 1.46325 1.21615 1.26335 1.00292 0.92853 0.82936 1.70210 0.99407 1.23412 1.27771 1.19933 0.93817 1.12341 0.99734 1.19143 0.87496 0.97154 0.92797 1.67330 0.96389 1.29065 1.37513 1.25070 0.95557 0.87082 0.86054 1.68109 1.27498 1.23580 1.14370 1.18056 0.85848 0.85708 0.86608 1.42161 1.13570 1.58742 1.20247 0.96778 0.91691 0.94069 0.92576 0.76018 0.87670 0.86412 0.90952 0.92755 0.92430 0.89434 0.85048 0.89683 0.71850 0.75376 0.74921 0.74372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.00 16 2 C 0.27 13.82 2.56 44.24 0.11 13.93 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.55 -28.86 8.73 25.60 0.22 -28.63 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.97 41.96 29.54 68.60 2.03 43.98 16 9 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.71 -28.64 5.07 -446.10 -2.26 -30.90 16 13 C 0.49 18.50 7.79 87.66 0.68 19.18 16 14 O -0.60 -28.51 15.64 -3.04 -0.05 -28.56 16 15 C -0.13 -2.97 5.70 29.85 0.17 -2.80 16 16 C -0.09 -1.90 4.50 30.60 0.14 -1.76 16 17 C -0.12 -1.75 5.54 30.60 0.17 -1.58 16 18 C 0.11 1.50 6.16 86.38 0.53 2.04 16 19 N -0.47 -7.80 2.79 -526.05 -1.47 -9.27 16 20 C 0.26 3.46 12.51 179.95 2.25 5.71 16 21 N -0.49 -9.19 11.28 -191.40 -2.16 -11.34 16 22 C -0.13 -2.87 7.17 39.69 0.28 -2.58 16 23 C 0.28 6.25 8.05 133.86 1.08 7.33 16 24 N -0.58 -13.52 10.47 -197.88 -2.07 -15.59 16 25 C 0.35 6.92 12.25 180.85 2.22 9.13 16 26 N -0.60 -12.24 10.45 -196.97 -2.06 -14.30 16 27 C 0.49 9.72 7.87 133.46 1.05 10.77 16 28 N -0.80 -9.62 9.05 -54.66 -0.49 -10.11 16 29 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.40 13.55 8.54 -92.70 -0.79 12.75 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 37 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.13 0.97 8.13 -2.39 -0.02 0.95 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.27 0.67 8.06 -2.91 -0.02 0.64 16 43 H 0.23 2.74 8.06 -2.91 -0.02 2.71 16 44 H 0.42 3.28 8.95 -92.71 -0.83 2.45 16 45 H 0.42 4.02 8.85 -92.71 -0.82 3.20 16 Total: -1.00 -79.38 383.80 0.35 -79.03 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -1.39 Total: 23.69 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 10.02 Total: 25.85 kcal Atomic # 7 Polarization: -133.73 SS G_CDS: -10.27 Total: -144.00 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -79.38 0.35 -79.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443779269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.398 kcal (2) G-P(sol) polarization free energy of solvation -79.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds