Wall clock time and date at job start Tue Mar 31 2020 17:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39250 * 119.78501 * 2 1 4 4 C 1.38157 * 119.01715 * 179.97438 * 3 2 1 5 5 N 1.37718 * 120.64787 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99625 * 0.02562 * 5 4 3 7 7 C 1.52999 * 109.46684 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46684 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99873 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99754 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.00137 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.47303 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46972 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47218 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99607 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00631 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00310 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99591 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46955 * 90.00746 * 18 16 14 20 20 H 1.48500 * 109.47393 * 210.00274 * 18 16 14 21 21 H 1.48498 * 109.47583 * 330.00511 * 18 16 14 22 22 N 1.36511 * 118.70927 * 0.25606 * 4 3 2 23 23 N 1.40069 * 133.37199 * 179.74418 * 22 4 3 24 24 C 1.31068 * 107.03556 * 179.97438 * 23 22 4 25 25 N 1.32733 * 109.62560 * 359.50249 * 24 23 22 26 26 C 1.32855 * 109.74079 * 0.59767 * 25 24 23 27 27 N 1.31650 * 119.78151 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47021 * 89.99674 * 1 2 3 29 29 H 1.08998 * 109.46980 * 210.00136 * 1 2 3 30 30 H 1.09000 * 109.46784 * 330.00113 * 1 2 3 31 31 H 1.08001 * 120.49540 * 0.02562 * 3 2 1 32 32 H 0.96995 * 120.00267 * 180.27782 * 5 4 3 33 33 H 1.09000 * 109.47212 * 300.00057 * 6 5 4 34 34 H 1.09001 * 109.46577 * 60.00131 * 6 5 4 35 35 H 1.09000 * 109.47486 * 300.00065 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00788 * 7 6 5 37 37 H 0.96999 * 120.00080 * 0.02562 * 8 7 6 38 38 H 1.09000 * 109.46978 * 300.00347 * 11 9 8 39 39 H 1.08996 * 109.47197 * 59.99985 * 11 9 8 40 40 H 1.09000 * 109.46986 * 299.99851 * 12 11 9 41 41 H 1.08996 * 109.47407 * 59.99623 * 12 11 9 42 42 H 1.09004 * 109.47552 * 299.99695 * 13 12 11 43 43 H 1.09000 * 109.47380 * 60.00304 * 13 12 11 44 44 H 0.97002 * 120.00002 * 179.97438 * 17 16 14 45 45 H 1.08001 * 125.18423 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.2085 0.0000 4 6 3.5802 1.1900 0.0005 5 7 4.2980 2.3653 0.0000 6 6 3.5970 3.6518 -0.0005 7 6 4.6197 4.7897 -0.0004 8 7 3.9186 6.0762 -0.0016 9 6 4.6211 7.2264 -0.0011 10 8 5.8335 7.1965 -0.0002 11 6 3.9000 8.5497 -0.0018 12 6 4.9227 9.6878 -0.0017 13 6 4.1906 11.0312 -0.0017 14 6 5.1978 12.1522 -0.0011 15 1 6.2544 11.9287 -0.0003 16 6 4.7705 13.4630 -0.0004 17 7 5.6495 14.4413 -0.0003 18 14 2.9429 13.8496 -0.0011 19 1 2.4580 13.9512 1.3989 20 1 2.7098 15.1387 -0.7004 21 1 2.2080 12.7662 -0.7020 22 7 4.2198 -0.0159 -0.0043 23 7 5.5700 -0.3886 -0.0098 24 6 5.6067 -1.6988 -0.0122 25 7 4.3696 -2.1794 0.0023 26 6 3.4984 -1.1764 0.0014 27 7 2.1609 -1.1426 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6633 2.1465 0.0004 32 1 5.2677 2.3414 -0.0037 33 1 2.9719 3.7246 -0.8905 34 1 2.9720 3.7252 0.8895 35 1 5.2444 4.7168 0.8898 36 1 5.2450 4.7165 -0.8902 37 1 2.9489 6.1001 -0.0019 38 1 3.2756 8.6228 -0.8922 39 1 3.2744 8.6230 0.8877 40 1 5.5474 9.6148 0.8885 41 1 5.5481 9.6143 -0.8914 42 1 3.5655 11.1045 -0.8918 43 1 3.5655 11.1044 0.8883 44 1 5.3488 15.3635 -0.0003 45 1 6.5065 -2.2961 -0.0161 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001445096569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:55 Heat of formation + Delta-G solvation = 88.277213 kcal Electronic energy + Delta-G solvation = -26293.142052 eV Core-core repulsion = 22347.839197 eV Total energy + Delta-G solvation = -3945.302855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.24865 -39.98112 -39.53666 -37.84925 -35.48818 -34.38265 -33.75492 -32.56065 -32.16220 -30.84805 -29.58905 -28.83050 -28.06343 -25.06568 -23.89630 -23.17584 -22.85487 -22.04571 -20.72316 -19.98537 -19.42582 -18.31443 -17.39552 -17.19867 -17.12163 -16.62048 -16.36630 -15.92468 -15.59931 -15.38843 -15.34375 -14.62609 -14.37211 -14.28613 -13.96954 -13.62574 -13.48056 -13.18284 -13.15031 -12.85069 -12.70030 -12.45849 -12.34754 -12.23912 -12.05551 -11.68708 -11.06794 -10.84979 -10.57956 -10.47745 -10.38361 -10.14174 -9.95144 -9.94872 -9.78209 -9.58245 -9.40518 -9.19863 -8.55977 -8.51786 -6.05340 -4.03627 0.20261 0.35227 1.15649 2.05013 2.17342 2.64078 2.94186 3.04549 3.09328 3.26991 3.34369 3.36442 3.61760 3.85291 4.10324 4.24039 4.25099 4.42195 4.50138 4.59535 4.73753 4.83547 4.93256 4.99794 5.07254 5.13581 5.24151 5.27665 5.42247 5.45115 5.46816 5.50293 5.73384 5.88545 5.95730 6.01434 6.07892 6.44958 6.46706 6.59609 6.83848 7.18355 7.22882 7.30661 7.38152 7.57664 7.77157 8.14940 8.53840 9.01060 9.56308 11.08278 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.001573 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.794196 B =17793.030362 C =18838.161698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.266 3.734 3 C -0.323 4.323 4 C 0.493 3.507 5 N -0.702 5.702 6 C 0.110 3.890 7 C 0.108 3.892 8 N -0.739 5.739 9 C 0.515 3.485 10 O -0.529 6.529 11 C -0.140 4.140 12 C -0.089 4.089 13 C -0.014 4.014 14 C -0.521 4.521 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.903 5.903 18 Si 0.882 3.118 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 N -0.365 5.365 23 N -0.353 5.353 24 C 0.260 3.740 25 N -0.539 5.539 26 C 0.487 3.513 27 N -0.508 5.508 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.420 0.580 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.263 0.737 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.192 -31.264 -0.073 33.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 C -0.356 4.356 4 C 0.267 3.733 5 N -0.331 5.331 6 C -0.015 4.015 7 C -0.017 4.017 8 N -0.394 5.394 9 C 0.303 3.697 10 O -0.404 6.404 11 C -0.180 4.180 12 C -0.127 4.127 13 C -0.052 4.052 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.542 5.542 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 N -0.151 5.151 23 N -0.184 5.184 24 C -0.042 4.042 25 N -0.273 5.273 26 C 0.126 3.874 27 N -0.230 5.230 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.258 0.742 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.237 0.763 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.964 -31.771 -0.067 33.609 hybrid contribution -0.513 1.111 0.010 1.223 sum -11.477 -30.660 -0.057 32.738 Atomic orbital electron populations 1.20863 0.86472 1.04778 1.04410 1.21538 0.97651 0.86143 0.83908 1.21181 0.88515 1.01826 1.24113 1.17914 0.88921 0.77940 0.88516 1.44387 1.10266 1.02183 1.76304 1.21791 0.95574 0.80316 1.03774 1.21263 0.94466 0.82169 1.03777 1.45884 1.10319 1.04871 1.78326 1.21256 0.88216 0.85625 0.74583 1.90725 1.14272 1.87517 1.47859 1.21880 1.00679 0.91501 1.03920 1.21287 0.96349 0.92429 1.02617 1.19604 0.96492 0.92929 0.96135 1.21153 0.94521 0.89547 1.50661 0.90954 1.25058 0.97570 0.96356 0.94663 1.69921 1.33777 0.99382 1.51147 0.86755 0.86171 0.77751 0.78408 1.20348 1.21416 1.19070 1.48924 1.08234 1.06758 1.51213 1.78363 0.90084 1.15615 1.34292 1.26240 0.96307 0.89325 0.92326 1.70986 0.98792 1.26164 1.31333 1.22880 0.89956 0.80775 0.93748 1.67841 1.01372 1.28410 1.25402 0.88796 0.89273 0.89312 0.81536 0.74207 0.89578 0.89567 0.90565 0.90579 0.76341 0.89124 0.89124 0.92054 0.92024 0.96627 0.97064 0.92750 0.75278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.29 10.18 36.01 0.37 0.08 16 2 C 0.27 1.75 6.81 -82.29 -0.56 1.18 16 3 C -0.32 -1.71 9.01 -39.24 -0.35 -2.06 16 4 C 0.49 3.65 7.76 -152.98 -1.19 2.47 16 5 N -0.70 -3.84 5.68 -60.00 -0.34 -4.18 16 6 C 0.11 0.36 5.02 -4.04 -0.02 0.34 16 7 C 0.11 0.69 5.79 -4.04 -0.02 0.67 16 8 N -0.74 -5.64 5.56 -60.29 -0.33 -5.97 16 9 C 0.52 6.69 7.83 -10.99 -0.09 6.60 16 10 O -0.53 -9.36 15.98 5.55 0.09 -9.27 16 11 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 12 C -0.09 -1.72 4.44 -26.73 -0.12 -1.84 16 13 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 14 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 15 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 16 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 18 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 22 N -0.37 -3.76 3.93 -12.98 -0.05 -3.81 16 23 N -0.35 -3.67 12.76 29.26 0.37 -3.30 16 24 C 0.26 2.42 12.98 -91.96 -1.19 1.23 16 25 N -0.54 -6.54 11.26 -15.66 -0.18 -6.72 16 26 C 0.49 5.78 9.00 -323.16 -2.91 2.87 16 27 N -0.51 -5.32 10.38 -10.18 -0.11 -5.43 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.03 8.08 -51.93 -0.42 -0.39 16 31 H 0.17 0.29 6.78 -52.49 -0.36 -0.06 16 32 H 0.42 2.55 8.58 -40.82 -0.35 2.20 16 33 H 0.09 0.16 7.95 -51.93 -0.41 -0.25 16 34 H 0.09 0.16 7.95 -51.93 -0.41 -0.25 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 1.66 8.47 -40.82 -0.35 1.31 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 42 H 0.02 0.35 7.20 -51.93 -0.37 -0.03 16 43 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.23 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -39.28 383.42 -11.90 -51.18 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.45 Total: -3.35 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -6.79 Total: -4.33 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.14 Total: -56.50 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.28 -11.90 -51.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445096569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.460 kcal (2) G-P(sol) polarization free energy of solvation -39.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds