Wall clock time and date at job start Tue Mar 31 2020 17:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39250 * 119.78501 * 2 1 4 4 C 1.38157 * 119.01715 * 179.97438 * 3 2 1 5 5 N 1.37718 * 120.64787 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99625 * 0.02562 * 5 4 3 7 7 C 1.52999 * 109.46684 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46684 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99873 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99754 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.00137 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.47303 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46972 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47218 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99607 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00631 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00310 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99591 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46955 * 90.00746 * 18 16 14 20 20 H 1.48500 * 109.47393 * 210.00274 * 18 16 14 21 21 H 1.48498 * 109.47583 * 330.00511 * 18 16 14 22 22 N 1.36511 * 118.70927 * 0.25606 * 4 3 2 23 23 N 1.40069 * 133.37199 * 179.74418 * 22 4 3 24 24 C 1.31068 * 107.03556 * 179.97438 * 23 22 4 25 25 N 1.32733 * 109.62560 * 359.50249 * 24 23 22 26 26 C 1.32855 * 109.74079 * 0.59767 * 25 24 23 27 27 N 1.31650 * 119.78151 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47021 * 89.99674 * 1 2 3 29 29 H 1.08998 * 109.46980 * 210.00136 * 1 2 3 30 30 H 1.09000 * 109.46784 * 330.00113 * 1 2 3 31 31 H 1.08001 * 120.49540 * 0.02562 * 3 2 1 32 32 H 0.96995 * 120.00267 * 180.27782 * 5 4 3 33 33 H 1.09000 * 109.47212 * 300.00057 * 6 5 4 34 34 H 1.09001 * 109.46577 * 60.00131 * 6 5 4 35 35 H 1.09000 * 109.47486 * 300.00065 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00788 * 7 6 5 37 37 H 0.96999 * 120.00080 * 0.02562 * 8 7 6 38 38 H 1.09000 * 109.46978 * 300.00347 * 11 9 8 39 39 H 1.08996 * 109.47197 * 59.99985 * 11 9 8 40 40 H 1.09000 * 109.46986 * 299.99851 * 12 11 9 41 41 H 1.08996 * 109.47407 * 59.99623 * 12 11 9 42 42 H 1.09004 * 109.47552 * 299.99695 * 13 12 11 43 43 H 1.09000 * 109.47380 * 60.00304 * 13 12 11 44 44 H 0.97002 * 120.00002 * 179.97438 * 17 16 14 45 45 H 1.08001 * 125.18423 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.2085 0.0000 4 6 3.5802 1.1900 0.0005 5 7 4.2980 2.3653 0.0000 6 6 3.5970 3.6518 -0.0005 7 6 4.6197 4.7897 -0.0004 8 7 3.9186 6.0762 -0.0016 9 6 4.6211 7.2264 -0.0011 10 8 5.8335 7.1965 -0.0002 11 6 3.9000 8.5497 -0.0018 12 6 4.9227 9.6878 -0.0017 13 6 4.1906 11.0312 -0.0017 14 6 5.1978 12.1522 -0.0011 15 1 6.2544 11.9287 -0.0003 16 6 4.7705 13.4630 -0.0004 17 7 5.6495 14.4413 -0.0003 18 14 2.9429 13.8496 -0.0011 19 1 2.4580 13.9512 1.3989 20 1 2.7098 15.1387 -0.7004 21 1 2.2080 12.7662 -0.7020 22 7 4.2198 -0.0159 -0.0043 23 7 5.5700 -0.3886 -0.0098 24 6 5.6067 -1.6988 -0.0122 25 7 4.3696 -2.1794 0.0023 26 6 3.4984 -1.1764 0.0014 27 7 2.1609 -1.1426 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6633 2.1465 0.0004 32 1 5.2677 2.3414 -0.0037 33 1 2.9719 3.7246 -0.8905 34 1 2.9720 3.7252 0.8895 35 1 5.2444 4.7168 0.8898 36 1 5.2450 4.7165 -0.8902 37 1 2.9489 6.1001 -0.0019 38 1 3.2756 8.6228 -0.8922 39 1 3.2744 8.6230 0.8877 40 1 5.5474 9.6148 0.8885 41 1 5.5481 9.6143 -0.8914 42 1 3.5655 11.1045 -0.8918 43 1 3.5655 11.1044 0.8883 44 1 5.3488 15.3635 -0.0003 45 1 6.5065 -2.2961 -0.0161 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001445096569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:54 Heat of formation + Delta-G solvation = 61.012278 kcal Electronic energy + Delta-G solvation = -26294.324348 eV Core-core repulsion = 22347.839197 eV Total energy + Delta-G solvation = -3946.485151 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.87179 -40.85137 -40.16896 -38.37128 -36.35561 -35.95713 -34.42475 -34.09304 -33.07192 -31.54796 -30.59566 -29.44842 -28.98995 -26.01390 -25.09080 -23.63349 -23.60248 -22.65446 -22.08579 -21.24968 -20.02251 -18.97424 -18.84492 -17.94717 -17.81157 -17.80772 -17.06847 -16.64281 -16.24284 -16.20357 -16.11604 -15.94804 -15.12443 -15.06484 -14.83344 -14.71477 -14.55796 -14.05463 -13.92014 -13.79495 -13.76556 -13.21963 -13.04308 -12.86908 -12.79648 -12.72124 -12.67770 -12.44748 -11.77521 -11.71789 -11.47213 -11.31113 -11.30432 -10.99856 -10.96745 -10.86355 -10.73687 -10.50709 -10.17853 -9.04612 -8.26396 -6.32392 -0.31196 -0.23529 0.62164 1.40146 1.44050 1.52250 1.55952 1.56455 1.65582 2.35185 2.40647 2.43752 2.47238 3.08983 3.09763 3.44923 3.63810 3.76221 3.93248 3.93488 4.13719 4.19481 4.26370 4.29624 4.40474 4.53105 4.66982 4.71991 4.81554 4.87184 4.90013 4.93513 4.96130 5.00398 5.06254 5.16087 5.27160 5.33852 5.43174 5.58058 5.59620 5.63014 5.70130 5.95745 6.31997 6.54769 6.59367 6.77024 6.94114 7.28417 7.32329 8.91273 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.001573 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.794196 B =17793.030362 C =18838.161698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.260 3.740 3 C -0.305 4.305 4 C 0.474 3.526 5 N -0.700 5.700 6 C 0.117 3.883 7 C 0.109 3.891 8 N -0.710 5.710 9 C 0.514 3.486 10 O -0.589 6.589 11 C -0.129 4.129 12 C -0.084 4.084 13 C -0.010 4.010 14 C -0.542 4.542 15 H 0.017 0.983 16 C -0.006 4.006 17 N -0.958 5.958 18 Si 0.964 3.036 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.231 1.231 22 N -0.374 5.374 23 N -0.375 5.375 24 C 0.258 3.742 25 N -0.579 5.579 26 C 0.466 3.534 27 N -0.544 5.544 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.212 0.788 32 H 0.415 0.585 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.425 0.575 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.266 0.734 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.147 -31.547 -0.095 35.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.104 3.896 3 C -0.337 4.337 4 C 0.248 3.752 5 N -0.328 5.328 6 C -0.005 4.005 7 C -0.016 4.016 8 N -0.365 5.365 9 C 0.303 3.697 10 O -0.469 6.469 11 C -0.169 4.169 12 C -0.123 4.123 13 C -0.047 4.047 14 C -0.580 4.580 15 H 0.035 0.965 16 C -0.202 4.202 17 N -0.599 5.599 18 Si 0.785 3.215 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.154 1.154 22 N -0.160 5.160 23 N -0.206 5.206 24 C -0.043 4.043 25 N -0.314 5.314 26 C 0.105 3.895 27 N -0.269 5.269 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.139 0.861 31 H 0.228 0.772 32 H 0.252 0.748 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.264 0.736 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -16.001 -32.066 -0.089 35.837 hybrid contribution 1.108 1.245 0.017 1.667 sum -14.893 -30.821 -0.071 34.231 Atomic orbital electron populations 1.21043 0.83588 1.06005 1.05595 1.22303 0.99373 0.85688 0.82237 1.21703 0.87498 1.03069 1.21462 1.18406 0.89786 0.77612 0.89364 1.44476 1.10136 1.02369 1.75782 1.21890 0.94463 0.77812 1.06376 1.21248 0.95258 0.82580 1.02525 1.45501 1.11367 1.03835 1.75837 1.21187 0.87417 0.86948 0.74187 1.90722 1.16838 1.88350 1.50992 1.21718 0.99066 0.89111 1.06986 1.21067 0.97265 0.93806 1.00129 1.19556 0.95459 0.92203 0.97489 1.21599 0.93539 0.92144 1.50692 0.96506 1.26245 1.04209 0.95831 0.93869 1.70118 1.37021 1.00046 1.52738 0.85471 0.78321 0.78277 0.79383 1.18928 1.21498 1.15405 1.48968 1.07929 1.07562 1.51554 1.78256 0.90830 1.16186 1.35354 1.26926 0.96739 0.89390 0.91278 1.70918 0.99907 1.27530 1.33065 1.23098 0.90653 0.81361 0.94379 1.67911 1.00908 1.30673 1.27379 0.87361 0.90052 0.86052 0.77159 0.74848 0.86866 0.86843 0.92002 0.92017 0.73585 0.85988 0.85927 0.94745 0.94736 0.94901 0.95049 0.92583 0.72007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 10.18 71.24 0.73 0.52 16 2 C 0.26 2.80 6.81 42.83 0.29 3.10 16 3 C -0.31 -2.10 9.01 22.49 0.20 -1.90 16 4 C 0.47 6.09 7.76 131.99 1.02 7.11 16 5 N -0.70 -6.04 5.68 -343.76 -1.95 -8.00 16 6 C 0.12 0.26 5.02 86.38 0.43 0.69 16 7 C 0.11 1.12 5.79 86.38 0.50 1.62 16 8 N -0.71 -8.13 5.56 -463.05 -2.57 -10.71 16 9 C 0.51 12.25 7.83 87.66 0.69 12.94 16 10 O -0.59 -21.10 15.98 -3.04 -0.05 -21.15 16 11 C -0.13 -3.00 5.70 29.85 0.17 -2.83 16 12 C -0.08 -3.26 4.44 30.59 0.14 -3.12 16 13 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 14 C -0.54 -31.76 9.66 25.60 0.25 -31.51 16 15 H 0.02 1.11 7.99 -2.91 -0.02 1.09 16 16 C -0.01 -0.34 5.47 84.65 0.46 0.12 16 17 N -0.96 -61.06 13.96 21.45 0.30 -60.76 16 18 Si 0.96 42.35 27.47 68.60 1.88 44.23 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 22 N -0.37 -7.65 3.93 -194.98 -0.77 -8.41 16 23 N -0.38 -8.01 12.76 -61.35 -0.78 -8.80 16 24 C 0.26 5.01 12.98 180.82 2.35 7.35 16 25 N -0.58 -14.72 11.26 -203.46 -2.29 -17.01 16 26 C 0.47 11.30 9.00 261.61 2.35 13.65 16 27 N -0.54 -11.27 10.38 -186.13 -1.93 -13.21 16 28 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.12 -0.54 8.08 -2.39 -0.02 -0.56 16 31 H 0.21 -0.62 6.78 -2.91 -0.02 -0.64 16 32 H 0.41 4.69 8.58 -92.71 -0.80 3.89 16 33 H 0.11 -0.26 7.95 -2.39 -0.02 -0.28 16 34 H 0.11 -0.26 7.95 -2.39 -0.02 -0.28 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.43 1.01 8.47 -92.71 -0.79 0.23 16 38 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.03 1.47 8.10 -2.39 -0.02 1.45 16 41 H 0.03 1.47 8.10 -2.39 -0.02 1.45 16 42 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 43 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.26 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -95.38 383.42 0.94 -94.44 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -0.60 Total: 1.94 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 9.70 Total: 7.42 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -10.00 Total: -126.89 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -95.38 0.94 -94.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445096569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.456 kcal (2) G-P(sol) polarization free energy of solvation -95.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds