Wall clock time and date at job start Tue Mar 31 2020 17:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47510 * 11.64765 * 3 2 1 5 5 N 1.46496 * 109.47728 * 179.97438 * 4 3 2 6 6 C 1.34965 * 125.97641 * 124.99420 * 5 4 3 7 7 C 1.35243 * 107.85923 * 180.02562 * 6 5 4 8 8 C 1.40403 * 107.86851 * 359.97438 * 7 6 5 9 9 N 1.40200 * 125.97407 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99702 * 359.72869 * 9 8 7 11 11 O 1.21584 * 120.00140 * 355.01496 * 10 9 8 12 12 N 1.34777 * 119.99513 * 175.01859 * 10 9 8 13 13 C 1.47082 * 120.87935 * 184.71787 * 12 10 9 14 14 C 1.53693 * 108.27774 * 128.74970 * 13 12 10 15 15 N 1.46902 * 109.25351 * 54.08172 * 14 13 12 16 16 C 1.46907 * 110.99965 * 172.60497 * 15 14 13 17 17 C 1.50703 * 109.47048 * 294.30394 * 16 15 14 18 18 H 1.07997 * 120.00040 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00073 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47232 * 90.00154 * 21 19 17 23 23 H 1.48500 * 109.46906 * 210.00458 * 21 19 17 24 24 H 1.48506 * 109.47325 * 330.00217 * 21 19 17 25 25 C 1.46893 * 111.27197 * 296.75343 * 15 14 13 26 26 C 1.47073 * 120.88291 * 4.99131 * 12 10 9 27 27 N 1.31213 * 108.05372 * 0.26880 * 8 7 6 28 28 H 1.08998 * 109.47022 * 251.64666 * 3 2 1 29 29 H 1.09003 * 109.47284 * 131.64959 * 3 2 1 30 30 H 1.08998 * 109.47059 * 59.99924 * 4 3 2 31 31 H 1.09003 * 109.47005 * 300.00364 * 4 3 2 32 32 H 1.07999 * 126.07137 * 359.97438 * 6 5 4 33 33 H 1.08003 * 126.06992 * 180.02562 * 7 6 5 34 34 H 0.96995 * 119.99482 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.62540 * 248.52006 * 13 12 10 36 36 H 1.09000 * 109.62874 * 9.10361 * 13 12 10 37 37 H 1.09000 * 109.65181 * 294.08080 * 14 13 12 38 38 H 1.09003 * 109.44534 * 173.95853 * 14 13 12 39 39 H 1.08998 * 109.46929 * 54.30492 * 16 15 14 40 40 H 1.08995 * 109.47360 * 174.30423 * 16 15 14 41 41 H 0.97000 * 120.00380 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.49798 * 303.14495 * 25 15 14 43 43 H 1.08998 * 109.49542 * 183.06044 * 25 15 14 44 44 H 1.08998 * 109.63441 * 350.90223 * 26 12 10 45 45 H 1.08997 * 109.63028 * 111.48100 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4118 -0.2912 5 7 4.5836 -1.4111 -0.2918 6 6 5.3772 -2.2047 0.4578 7 6 6.6623 -1.8979 0.1689 8 6 6.6553 -0.8774 -0.7953 9 7 7.7858 -0.2739 -1.3640 10 6 9.0194 -0.6637 -0.9864 11 8 9.1532 -1.4729 -0.0889 12 7 10.1048 -0.1564 -1.6038 13 6 11.4543 -0.6430 -1.2792 14 6 12.1616 -1.0141 -2.5922 15 7 12.1195 0.1349 -3.5066 16 6 12.9341 -0.1146 -4.7034 17 6 14.3855 -0.2168 -4.3108 18 1 14.6740 -0.1070 -3.2759 19 6 15.3451 -0.4506 -5.2729 20 7 14.9938 -0.5838 -6.5333 21 14 17.1441 -0.5779 -4.7862 22 1 17.4725 -1.9912 -4.4700 23 1 17.9951 -0.1114 -5.9102 24 1 17.3947 0.2677 -3.5914 25 6 10.7379 0.4749 -3.8718 26 6 9.9717 0.9027 -2.6155 27 7 5.4058 -0.5828 -1.0665 28 1 2.9711 0.3244 0.9754 29 1 2.9710 0.6838 -0.7679 30 1 2.7555 -1.7355 -1.2666 31 1 2.7556 -2.0949 0.4767 32 1 5.0450 -2.9515 1.1637 33 1 7.5385 -2.3571 0.6023 34 1 7.6799 0.4271 -2.0260 35 1 12.0129 0.1408 -0.7676 36 1 11.3823 -1.5225 -0.6394 37 1 11.6577 -1.8640 -3.0526 38 1 13.1992 -1.2755 -2.3842 39 1 12.6175 -1.0472 -5.1705 40 1 12.8054 0.7067 -5.4083 41 1 15.6689 -0.7479 -7.2102 42 1 10.2538 -0.3956 -4.3143 43 1 10.7429 1.2938 -4.5912 44 1 8.9191 1.0458 -2.8597 45 1 10.3905 1.8322 -2.2300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476179058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:45 Heat of formation + Delta-G solvation = 111.097328 kcal Electronic energy + Delta-G solvation = -27306.940238 eV Core-core repulsion = 23362.626938 eV Total energy + Delta-G solvation = -3944.313301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60862 -40.25867 -37.85018 -37.45291 -35.41878 -34.61103 -33.85116 -32.41333 -30.91953 -30.31422 -29.71713 -28.20014 -25.68086 -24.75692 -23.40939 -22.56515 -21.75840 -21.26353 -20.31142 -19.24583 -18.31996 -18.07436 -17.30018 -16.54004 -16.34107 -16.03725 -15.73032 -15.31602 -15.00843 -14.71200 -14.49822 -14.16615 -14.07719 -13.88914 -13.77190 -13.60707 -13.38082 -13.22648 -13.02347 -12.92655 -12.42258 -12.26484 -12.03286 -11.85350 -11.33749 -11.22400 -10.98414 -10.91383 -10.86084 -10.78990 -10.65471 -10.55530 -10.00376 -9.88954 -9.30618 -9.05719 -8.69550 -8.49332 -8.26226 -7.37540 -6.08285 -4.10264 1.55557 1.74105 2.17298 2.21524 2.53737 2.63716 3.29164 3.34152 3.35879 3.39475 3.40228 3.70775 4.02300 4.20878 4.37001 4.54063 4.58209 4.69639 4.86493 5.08798 5.10729 5.19526 5.25498 5.31388 5.33145 5.45216 5.58528 5.63560 5.76739 5.85370 5.94813 6.07761 6.14723 6.35865 6.49023 6.53249 6.66603 6.77664 6.82094 6.96052 7.18132 7.24487 7.40397 7.71352 7.86023 7.97336 8.08202 8.42745 8.44078 8.96977 9.54551 11.02472 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.032872 B = 0.001855 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.577767 B =15091.189729 C =15561.861089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.208 3.792 3 C -0.039 4.039 4 C 0.150 3.850 5 N -0.378 5.378 6 C 0.063 3.937 7 C -0.259 4.259 8 C 0.329 3.671 9 N -0.651 5.651 10 C 0.716 3.284 11 O -0.571 6.571 12 N -0.617 5.617 13 C 0.133 3.867 14 C 0.050 3.950 15 N -0.534 5.534 16 C 0.193 3.807 17 C -0.510 4.510 18 H 0.065 0.935 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.040 3.960 26 C 0.115 3.885 27 N -0.330 5.330 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.099 0.901 39 H -0.008 1.008 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.936 -0.119 13.156 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.111 4.111 3 C -0.079 4.079 4 C 0.026 3.974 5 N -0.163 5.163 6 C -0.081 4.081 7 C -0.290 4.290 8 C 0.072 3.928 9 N -0.305 5.305 10 C 0.418 3.582 11 O -0.448 6.448 12 N -0.353 5.353 13 C 0.011 3.989 14 C -0.080 4.080 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.090 4.090 26 C -0.009 4.009 27 N -0.160 5.160 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.194 0.806 33 H 0.192 0.808 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.117 0.883 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.074 0.377 13.169 26.570 hybrid contribution 1.522 -0.798 -0.405 1.766 sum -21.552 -0.421 12.763 25.051 Atomic orbital electron populations 1.81297 1.12827 1.07532 1.08654 1.28844 0.94842 0.93993 0.93431 1.19517 0.81721 0.99665 1.07040 1.21420 0.74891 0.96327 1.04726 1.47924 1.04981 1.30111 1.33279 1.22609 0.90535 0.97375 0.97579 1.21933 0.97912 1.03919 1.05210 1.18868 0.86065 0.93695 0.94176 1.41900 1.02159 1.41425 1.44975 1.15556 0.79591 0.81193 0.81904 1.90826 1.84617 1.37499 1.31833 1.47433 1.05826 1.40385 1.41675 1.21931 0.79028 1.00224 0.97721 1.22472 1.01499 0.91907 0.92088 1.62089 1.07635 1.37416 1.18826 1.19733 0.92061 0.95503 0.85833 1.21137 0.90852 1.48535 0.94360 0.91722 1.24990 0.99316 0.95372 0.94865 1.69952 1.33918 1.49405 1.00428 0.86492 0.84478 0.78274 0.78144 1.20716 1.21287 1.19714 1.22386 0.91018 1.00336 0.95243 1.21869 0.99227 0.90856 0.88932 1.77287 0.99191 1.18875 1.20638 0.86624 0.85775 0.88942 0.87590 0.80552 0.80799 0.75085 0.90713 0.89058 0.95591 0.88287 0.99067 0.95011 0.92871 0.95389 0.89900 0.91201 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -3.89 18.54 42.15 0.78 -3.11 16 2 C 0.21 1.17 15.43 -20.76 -0.32 0.85 16 3 C -0.04 -0.11 5.88 -29.52 -0.17 -0.29 16 4 C 0.15 0.50 6.46 -4.05 -0.03 0.48 16 5 N -0.38 -2.78 3.68 -61.39 -0.23 -3.00 16 6 C 0.06 0.48 11.44 -17.24 -0.20 0.28 16 7 C -0.26 -2.95 9.61 -39.83 -0.38 -3.34 16 8 C 0.33 3.96 8.11 -154.35 -1.25 2.71 16 9 N -0.65 -7.74 5.37 -15.51 -0.08 -7.83 16 10 C 0.72 10.22 8.27 -86.92 -0.72 9.50 16 11 O -0.57 -9.46 12.97 5.29 0.07 -9.40 16 12 N -0.62 -8.58 3.00 -177.91 -0.53 -9.12 16 13 C 0.13 2.00 6.61 -3.36 -0.02 1.98 16 14 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 15 N -0.53 -10.47 4.62 -235.47 -1.09 -11.55 16 16 C 0.19 4.74 4.72 -4.97 -0.02 4.72 16 17 C -0.51 -13.61 8.41 -34.44 -0.29 -13.90 16 18 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 26 C 0.11 1.39 6.59 -3.60 -0.02 1.37 16 27 N -0.33 -3.43 12.43 31.44 0.39 -3.04 16 28 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.09 8.07 -51.93 -0.42 -0.33 16 32 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.17 2.29 5.93 -52.48 -0.31 1.98 16 34 H 0.41 3.98 6.32 -40.82 -0.26 3.72 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.36 7.09 -51.93 -0.37 0.99 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.91 6.67 -51.93 -0.35 1.56 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 40 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.24 7.99 -51.93 -0.41 0.82 16 44 H 0.07 0.63 5.64 -51.93 -0.29 0.34 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -34.34 377.11 -9.00 -43.33 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.14 Total: -0.02 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.57 Total: 7.28 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.02 Total: -62.79 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.34 -9.00 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476179058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.432 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds