Wall clock time and date at job start Tue Mar 31 2020 17:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47510 * 11.64765 * 3 2 1 5 5 N 1.46496 * 109.47728 * 179.97438 * 4 3 2 6 6 C 1.34965 * 125.97641 * 124.99420 * 5 4 3 7 7 C 1.35243 * 107.85923 * 180.02562 * 6 5 4 8 8 C 1.40403 * 107.86851 * 359.97438 * 7 6 5 9 9 N 1.40200 * 125.97407 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99702 * 359.72869 * 9 8 7 11 11 O 1.21584 * 120.00140 * 355.01496 * 10 9 8 12 12 N 1.34777 * 119.99513 * 175.01859 * 10 9 8 13 13 C 1.47082 * 120.87935 * 184.71787 * 12 10 9 14 14 C 1.53693 * 108.27774 * 128.74970 * 13 12 10 15 15 N 1.46902 * 109.25351 * 54.08172 * 14 13 12 16 16 C 1.46907 * 110.99965 * 172.60497 * 15 14 13 17 17 C 1.50703 * 109.47048 * 294.30394 * 16 15 14 18 18 H 1.07997 * 120.00040 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00073 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47232 * 90.00154 * 21 19 17 23 23 H 1.48500 * 109.46906 * 210.00458 * 21 19 17 24 24 H 1.48506 * 109.47325 * 330.00217 * 21 19 17 25 25 C 1.46893 * 111.27197 * 296.75343 * 15 14 13 26 26 C 1.47073 * 120.88291 * 4.99131 * 12 10 9 27 27 N 1.31213 * 108.05372 * 0.26880 * 8 7 6 28 28 H 1.08998 * 109.47022 * 251.64666 * 3 2 1 29 29 H 1.09003 * 109.47284 * 131.64959 * 3 2 1 30 30 H 1.08998 * 109.47059 * 59.99924 * 4 3 2 31 31 H 1.09003 * 109.47005 * 300.00364 * 4 3 2 32 32 H 1.07999 * 126.07137 * 359.97438 * 6 5 4 33 33 H 1.08003 * 126.06992 * 180.02562 * 7 6 5 34 34 H 0.96995 * 119.99482 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.62540 * 248.52006 * 13 12 10 36 36 H 1.09000 * 109.62874 * 9.10361 * 13 12 10 37 37 H 1.09000 * 109.65181 * 294.08080 * 14 13 12 38 38 H 1.09003 * 109.44534 * 173.95853 * 14 13 12 39 39 H 1.08998 * 109.46929 * 54.30492 * 16 15 14 40 40 H 1.08995 * 109.47360 * 174.30423 * 16 15 14 41 41 H 0.97000 * 120.00380 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.49798 * 303.14495 * 25 15 14 43 43 H 1.08998 * 109.49542 * 183.06044 * 25 15 14 44 44 H 1.08998 * 109.63441 * 350.90223 * 26 12 10 45 45 H 1.08997 * 109.63028 * 111.48100 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4118 -0.2912 5 7 4.5836 -1.4111 -0.2918 6 6 5.3772 -2.2047 0.4578 7 6 6.6623 -1.8979 0.1689 8 6 6.6553 -0.8774 -0.7953 9 7 7.7858 -0.2739 -1.3640 10 6 9.0194 -0.6637 -0.9864 11 8 9.1532 -1.4729 -0.0889 12 7 10.1048 -0.1564 -1.6038 13 6 11.4543 -0.6430 -1.2792 14 6 12.1616 -1.0141 -2.5922 15 7 12.1195 0.1349 -3.5066 16 6 12.9341 -0.1146 -4.7034 17 6 14.3855 -0.2168 -4.3108 18 1 14.6740 -0.1070 -3.2759 19 6 15.3451 -0.4506 -5.2729 20 7 14.9938 -0.5838 -6.5333 21 14 17.1441 -0.5779 -4.7862 22 1 17.4725 -1.9912 -4.4700 23 1 17.9951 -0.1114 -5.9102 24 1 17.3947 0.2677 -3.5914 25 6 10.7379 0.4749 -3.8718 26 6 9.9717 0.9027 -2.6155 27 7 5.4058 -0.5828 -1.0665 28 1 2.9711 0.3244 0.9754 29 1 2.9710 0.6838 -0.7679 30 1 2.7555 -1.7355 -1.2666 31 1 2.7556 -2.0949 0.4767 32 1 5.0450 -2.9515 1.1637 33 1 7.5385 -2.3571 0.6023 34 1 7.6799 0.4271 -2.0260 35 1 12.0129 0.1408 -0.7676 36 1 11.3823 -1.5225 -0.6394 37 1 11.6577 -1.8640 -3.0526 38 1 13.1992 -1.2755 -2.3842 39 1 12.6175 -1.0472 -5.1705 40 1 12.8054 0.7067 -5.4083 41 1 15.6689 -0.7479 -7.2102 42 1 10.2538 -0.3956 -4.3143 43 1 10.7429 1.2938 -4.5912 44 1 8.9191 1.0458 -2.8597 45 1 10.3905 1.8322 -2.2300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476179058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:42 Heat of formation + Delta-G solvation = 87.676894 kcal Electronic energy + Delta-G solvation = -27307.955825 eV Core-core repulsion = 23362.626938 eV Total energy + Delta-G solvation = -3945.328887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.37440 -41.28880 -39.15110 -38.00633 -36.25462 -36.03323 -34.66805 -34.21095 -32.08969 -31.12428 -30.44159 -29.74654 -27.27457 -25.44622 -24.59186 -24.02249 -22.95916 -22.12426 -21.37076 -20.31928 -19.11366 -18.76936 -18.46440 -17.98550 -17.25996 -16.86407 -16.75102 -16.43960 -16.15245 -15.93440 -15.65440 -15.36259 -15.35687 -15.11769 -14.68669 -14.47679 -14.38348 -14.05850 -13.86945 -13.74131 -13.55620 -13.42832 -13.06764 -12.90210 -12.71704 -12.56922 -12.33905 -12.29024 -12.24907 -12.13327 -11.75196 -11.70562 -11.60017 -11.29882 -11.04094 -10.59395 -9.90762 -9.71646 -9.13249 -8.98630 -8.18166 -6.27706 0.87998 1.01498 1.45141 1.45608 1.57206 1.58774 1.69658 1.77615 1.91080 2.35522 2.43117 2.70147 3.06656 3.14654 3.25635 3.69602 3.91312 3.95500 4.03516 4.08155 4.16494 4.28329 4.31714 4.43744 4.46896 4.54855 4.72655 4.74467 4.82261 4.87376 4.92904 4.96565 4.98969 5.04502 5.15562 5.22589 5.29676 5.48840 5.65755 5.72627 5.88222 6.06158 6.20398 6.27400 6.52090 6.55499 6.61452 6.88252 6.97329 7.36597 7.42188 8.92819 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.032872 B = 0.001855 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.577767 B =15091.189729 C =15561.861089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.243 3.757 3 C -0.029 4.029 4 C 0.142 3.858 5 N -0.367 5.367 6 C 0.091 3.909 7 C -0.301 4.301 8 C 0.303 3.697 9 N -0.643 5.643 10 C 0.716 3.284 11 O -0.597 6.597 12 N -0.620 5.620 13 C 0.147 3.853 14 C 0.055 3.945 15 N -0.537 5.537 16 C 0.208 3.792 17 C -0.522 4.522 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.262 1.262 25 C 0.037 3.963 26 C 0.124 3.876 27 N -0.340 5.340 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.221 0.779 33 H 0.150 0.850 34 H 0.420 0.580 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.010 0.990 38 H 0.082 0.918 39 H -0.042 1.042 40 H 0.011 0.989 41 H 0.263 0.737 42 H 0.018 0.982 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.194 0.200 14.923 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.075 4.075 3 C -0.069 4.069 4 C 0.021 3.979 5 N -0.151 5.151 6 C -0.055 4.055 7 C -0.332 4.332 8 C 0.047 3.953 9 N -0.296 5.296 10 C 0.417 3.583 11 O -0.475 6.475 12 N -0.356 5.356 13 C 0.024 3.976 14 C -0.074 4.074 15 N -0.261 5.261 16 C 0.081 3.919 17 C -0.560 4.560 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.186 1.186 25 C -0.092 4.092 26 C 0.001 3.999 27 N -0.171 5.171 28 H 0.152 0.848 29 H 0.143 0.857 30 H 0.116 0.884 31 H 0.159 0.841 32 H 0.237 0.763 33 H 0.168 0.832 34 H 0.260 0.740 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.028 0.972 38 H 0.101 0.899 39 H -0.024 1.024 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.389 0.730 14.932 28.606 hybrid contribution 1.767 -0.936 -0.949 2.213 sum -22.622 -0.207 13.984 26.596 Atomic orbital electron populations 1.81344 1.14813 1.09665 1.10938 1.29132 0.94941 0.92023 0.91398 1.19564 0.79692 0.99596 1.08078 1.21800 0.72424 0.97217 1.06496 1.48238 1.06161 1.28826 1.31836 1.23106 0.89153 0.96672 0.96560 1.21869 0.98993 1.05391 1.06899 1.19078 0.86419 0.94633 0.95190 1.41675 1.01589 1.41468 1.44918 1.15600 0.80147 0.80841 0.81668 1.90822 1.85118 1.38560 1.33023 1.47409 1.05361 1.40765 1.42094 1.21690 0.79618 1.00740 0.95587 1.22406 1.00868 0.90998 0.93166 1.62005 1.09652 1.37679 1.16796 1.19383 0.92398 0.92917 0.87162 1.21485 0.92027 1.48014 0.94515 0.91430 1.25887 1.03979 0.94972 0.94763 1.70081 1.35394 1.50513 1.01555 0.85404 0.78834 0.78502 0.78008 1.20100 1.21059 1.18649 1.22523 0.88995 1.00201 0.97516 1.21922 1.00910 0.90447 0.86632 1.77226 0.98751 1.19741 1.21340 0.84799 0.85750 0.88379 0.84094 0.76251 0.83199 0.74029 0.89702 0.88918 0.97151 0.89944 1.02412 0.97107 0.92800 0.96341 0.89174 0.87566 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -8.40 18.54 20.01 0.37 -8.03 16 2 C 0.24 2.18 15.43 89.44 1.38 3.56 16 3 C -0.03 -0.07 5.88 28.79 0.17 0.10 16 4 C 0.14 0.39 6.46 86.38 0.56 0.95 16 5 N -0.37 -4.15 3.68 -348.13 -1.28 -5.43 16 6 C 0.09 1.10 11.44 83.52 0.96 2.05 16 7 C -0.30 -6.54 9.61 22.11 0.21 -6.33 16 8 C 0.30 6.91 8.11 133.31 1.08 7.99 16 9 N -0.64 -14.56 5.37 -321.23 -1.72 -16.28 16 10 C 0.72 19.98 8.27 179.05 1.48 21.46 16 11 O -0.60 -19.86 12.97 -3.98 -0.05 -19.91 16 12 N -0.62 -16.68 3.00 -835.06 -2.51 -19.18 16 13 C 0.15 4.36 6.61 86.50 0.57 4.93 16 14 C 0.05 2.02 5.47 86.54 0.47 2.50 16 15 N -0.54 -21.38 4.62 -898.88 -4.15 -25.53 16 16 C 0.21 10.59 4.72 85.56 0.40 10.99 16 17 C -0.52 -28.43 8.41 25.60 0.22 -28.22 16 18 H 0.07 3.57 7.13 -2.91 -0.02 3.54 16 19 C 0.00 0.11 5.46 84.66 0.46 0.57 16 20 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 21 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 C 0.04 1.14 5.62 86.39 0.49 1.63 16 26 C 0.12 2.79 6.59 86.35 0.57 3.36 16 27 N -0.34 -6.33 12.43 -54.43 -0.68 -7.01 16 28 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.14 -0.50 8.07 -2.39 -0.02 -0.52 16 32 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.15 4.01 5.93 -2.91 -0.02 4.00 16 34 H 0.42 7.35 6.32 -92.71 -0.59 6.77 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.09 2.76 7.09 -2.39 -0.02 2.74 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.08 3.29 6.67 -2.39 -0.02 3.27 16 39 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 40 H 0.01 0.59 7.97 -2.39 -0.02 0.57 16 41 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 2.66 7.99 -2.39 -0.02 2.64 16 44 H 0.11 1.64 5.64 -2.39 -0.01 1.63 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -78.26 377.11 1.75 -76.50 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.44 Total: 9.00 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 9.02 Total: 25.54 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -9.69 Total: -136.36 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -78.26 1.75 -76.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476179058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.181 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds