Wall clock time and date at job start Tue Mar 31 2020 18:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47303 * 2 1 4 4 N 1.46502 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99968 * 275.30726 * 4 3 2 6 6 H 1.07998 * 119.99894 * 37.58024 * 5 4 3 7 7 C 1.38814 * 119.99892 * 217.57724 * 5 4 3 8 8 N 1.31613 * 119.99902 * 21.43123 * 7 5 4 9 9 Si 1.86794 * 119.99756 * 201.42857 * 7 5 4 10 10 H 1.48497 * 109.47346 * 89.99868 * 9 7 5 11 11 H 1.48504 * 109.47164 * 210.00099 * 9 7 5 12 12 H 1.48504 * 109.47098 * 330.00148 * 9 7 5 13 13 C 1.46497 * 120.00029 * 95.31334 * 4 3 2 14 14 C 1.53007 * 109.46754 * 269.99990 * 13 4 3 15 15 N 1.46497 * 109.46754 * 180.02562 * 14 13 4 16 16 C 1.34783 * 119.99935 * 179.72330 * 15 14 13 17 17 O 1.21288 * 119.99658 * 0.02562 * 16 15 14 18 18 C 1.50690 * 120.00146 * 179.97438 * 16 15 14 19 19 C 1.50705 * 109.47240 * 180.02562 * 18 16 15 20 20 N 1.32619 * 125.18514 * 90.02399 * 19 18 16 21 21 C 1.32822 * 109.75308 * 179.97438 * 20 19 18 22 22 N 1.33829 * 132.49659 * 180.02562 * 21 20 19 23 23 C 1.31351 * 120.86076 * 179.97438 * 22 21 20 24 24 C 1.40047 * 120.31401 * 0.02562 * 23 22 21 25 25 C 1.35782 * 119.23784 * 359.97438 * 24 23 22 26 26 N 1.35974 * 119.02359 * 0.02562 * 25 24 23 27 27 N 1.31182 * 125.18607 * 269.72227 * 19 18 16 28 28 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47152 * 299.99744 * 1 2 3 30 30 H 1.09001 * 109.47166 * 60.00099 * 1 2 3 31 31 H 1.08997 * 109.47152 * 240.00256 * 2 1 3 32 32 H 1.09001 * 109.47166 * 119.99901 * 2 1 3 33 33 H 1.09001 * 109.47262 * 60.00027 * 3 2 1 34 34 H 1.09004 * 109.47427 * 300.00145 * 3 2 1 35 35 H 0.97004 * 120.00241 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47368 * 150.00048 * 13 4 3 37 37 H 1.09008 * 109.47289 * 29.99573 * 13 4 3 38 38 H 1.09001 * 109.46853 * 60.00145 * 14 13 4 39 39 H 1.08995 * 109.47172 * 299.99742 * 14 13 4 40 40 H 0.97004 * 120.00627 * 359.97438 * 15 14 13 41 41 H 1.09004 * 109.47282 * 299.99976 * 18 16 15 42 42 H 1.08994 * 109.47521 * 60.00486 * 18 16 15 43 43 H 1.07997 * 119.84308 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.37803 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.48233 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1818 6 1 3.8170 0.6875 1.9636 7 6 5.3613 2.0514 1.3741 8 7 5.6020 3.1240 0.6503 9 14 6.5968 1.4960 2.6603 10 1 7.5669 0.5571 2.0419 11 1 7.3219 2.6774 3.1929 12 1 5.8836 0.8118 3.7688 13 6 4.2381 1.5597 -1.2623 14 6 4.4933 0.1642 -1.8353 15 7 5.2268 0.2814 -3.0980 16 6 5.5690 -0.8271 -3.7840 17 8 5.2692 -1.9217 -3.3561 18 6 6.3231 -0.7065 -5.0831 19 6 6.5800 -2.0814 -5.6443 20 7 5.7721 -2.7330 -6.4698 21 6 6.2965 -3.9157 -6.7707 22 7 5.8751 -4.9201 -7.5481 23 6 6.5923 -6.0119 -7.6862 24 6 7.8160 -6.1429 -7.0179 25 6 8.2516 -5.1289 -6.2269 26 7 7.4860 -4.0119 -6.1048 27 7 7.6395 -2.8137 -5.3953 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 6.4208 3.6263 0.7849 36 1 5.1903 2.0593 -1.0847 37 1 3.6492 2.1416 -1.9716 38 1 3.5409 -0.3354 -2.0130 39 1 5.0820 -0.4176 -1.1262 40 1 5.4695 1.1567 -3.4386 41 1 5.7322 -0.1289 -5.7940 42 1 7.2732 -0.2026 -4.9063 43 1 6.2362 -6.8125 -8.3175 44 1 8.4067 -7.0399 -7.1310 45 1 9.1925 -5.2085 -5.7026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493331081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:18 Heat of formation + Delta-G solvation = 117.018777 kcal Electronic energy + Delta-G solvation = -27513.893363 eV Core-core repulsion = 23569.836836 eV Total energy + Delta-G solvation = -3944.056527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.14075 -39.60991 -38.77703 -36.47568 -34.86361 -34.22336 -32.88468 -32.62224 -30.97692 -30.84445 -29.83199 -27.75810 -25.55449 -25.03555 -24.16263 -23.41009 -21.76658 -20.86141 -20.33362 -19.89127 -18.69613 -18.38442 -17.32988 -16.70531 -16.63092 -16.22575 -15.52111 -15.32448 -14.96747 -14.75965 -14.33058 -14.00098 -13.70767 -13.62489 -13.53213 -13.06793 -12.93405 -12.86156 -12.83798 -12.71504 -12.23066 -12.03533 -11.56524 -11.47436 -11.17078 -10.92799 -10.75379 -10.42391 -10.38508 -10.34827 -10.31177 -10.08609 -10.01497 -9.86935 -9.72517 -9.47312 -9.07736 -8.58155 -8.44750 -6.62456 -5.83916 -3.42681 0.08192 0.41369 1.60880 2.23761 2.88489 2.95056 3.12865 3.35199 3.42718 3.44890 3.52303 3.73285 3.90704 4.21024 4.44141 4.46111 4.66615 4.89926 5.03070 5.17395 5.20347 5.27251 5.46817 5.49292 5.69160 5.78498 5.84478 5.95260 5.98239 6.04683 6.13875 6.23502 6.30217 6.44733 6.55554 6.64282 6.68218 6.86662 6.99368 7.02578 7.11233 7.20082 7.54017 7.70170 7.80238 7.88347 8.47334 8.54372 9.14374 9.76173 10.34107 11.16034 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002499 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.852181 B =11203.676649 C =12247.501583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.137 3.863 14 C 0.098 3.902 15 N -0.716 5.716 16 C 0.517 3.483 17 O -0.539 6.539 18 C -0.056 4.056 19 C 0.305 3.695 20 N -0.510 5.510 21 C 0.441 3.559 22 N -0.453 5.453 23 C 0.203 3.797 24 C -0.229 4.229 25 C 0.175 3.825 26 N -0.326 5.326 27 N -0.320 5.320 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.190 0.810 44 H 0.174 0.826 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 -13.894 -17.697 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.367 5.367 16 C 0.300 3.700 17 O -0.416 6.416 18 C -0.099 4.099 19 C 0.024 3.976 20 N -0.242 5.242 21 C 0.080 3.920 22 N -0.168 5.168 23 C 0.017 3.983 24 C -0.254 4.254 25 C 0.037 3.963 26 N -0.105 5.105 27 N -0.151 5.151 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.233 0.767 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.207 0.793 44 H 0.191 0.809 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.465 -13.678 -17.277 22.484 hybrid contribution 1.673 -0.430 0.802 1.904 sum 6.138 -14.108 -16.476 22.542 Atomic orbital electron populations 1.21719 0.97322 1.00406 1.00999 1.22188 0.93841 1.00956 1.01573 1.20938 0.85007 0.92956 0.98939 1.43611 0.99465 1.84785 1.02084 1.19033 1.05651 1.20343 0.93928 0.92075 1.25176 1.00812 0.94544 0.98145 1.69992 1.25632 1.14751 1.42548 0.86392 0.81658 0.77870 0.81496 1.21245 1.21690 1.20174 1.21070 1.00362 0.91131 0.86453 1.22492 0.94826 1.02852 0.82515 1.46029 1.57770 1.08150 1.24755 1.19958 0.79980 0.85090 0.85010 1.90733 1.54729 1.26651 1.69491 1.20114 1.03915 0.89180 0.96652 1.23566 0.86879 0.96366 0.90832 1.70686 1.29446 1.02989 1.21075 1.22730 0.82969 0.94126 0.92162 1.68008 1.32352 0.99733 1.16660 1.23575 0.89031 0.93231 0.92480 1.21936 1.00407 1.00988 1.02040 1.22179 0.96470 0.82503 0.95143 1.48783 1.17187 1.13218 1.31355 1.78570 1.24462 0.91788 1.20310 0.93829 0.93208 0.93431 0.92925 0.92402 0.93578 0.94690 0.93517 0.88342 0.95178 0.92923 0.91790 0.76689 0.85385 0.85790 0.79322 0.80858 0.80052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.15 -2.74 6.23 -26.73 -0.17 -2.91 16 3 C 0.15 3.10 5.72 -4.04 -0.02 3.08 16 4 N -0.58 -14.06 2.43 -173.23 -0.42 -14.48 16 5 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -24.60 11.47 55.49 0.64 -23.96 16 9 Si 0.90 21.48 29.60 -169.99 -5.03 16.45 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.14 3.04 5.45 -4.04 -0.02 3.01 16 14 C 0.10 2.02 6.00 -4.04 -0.02 1.99 16 15 N -0.72 -11.91 5.56 -60.29 -0.33 -12.25 16 16 C 0.52 8.97 7.82 -10.99 -0.09 8.89 16 17 O -0.54 -11.97 16.03 5.55 0.09 -11.89 16 18 C -0.06 -0.73 6.33 -29.04 -0.18 -0.91 16 19 C 0.30 4.90 6.59 -157.00 -1.03 3.87 16 20 N -0.51 -8.80 11.25 -11.80 -0.13 -8.94 16 21 C 0.44 6.65 8.99 -323.14 -2.91 3.74 16 22 N -0.45 -5.48 10.48 -13.82 -0.14 -5.62 16 23 C 0.20 1.26 11.27 -17.08 -0.19 1.06 16 24 C -0.23 -0.99 10.07 -39.78 -0.40 -1.39 16 25 C 0.18 1.33 11.32 -16.60 -0.19 1.14 16 26 N -0.33 -4.34 3.91 -13.84 -0.05 -4.40 16 27 N -0.32 -5.05 12.78 32.39 0.41 -4.63 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.03 6.64 -51.93 -0.34 0.68 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 35 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.10 2.43 5.52 -51.93 -0.29 2.14 16 37 H 0.03 0.62 7.86 -51.92 -0.41 0.21 16 38 H 0.05 1.12 6.64 -51.93 -0.34 0.77 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.40 5.32 8.47 -40.82 -0.35 4.98 16 41 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.19 0.28 8.06 -52.49 -0.42 -0.15 16 44 H 0.17 -0.04 8.06 -52.49 -0.42 -0.46 16 45 H 0.18 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -38.32 383.37 -10.63 -48.95 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.34 Total: 2.14 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: -5.09 Total: 12.85 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -0.04 Total: -74.28 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.32 -10.63 -48.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493331081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.967 kcal (2) G-P(sol) polarization free energy of solvation -38.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds