Wall clock time and date at job start Tue Mar 31 2020 18:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47303 * 2 1 4 4 N 1.46502 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99968 * 275.30726 * 4 3 2 6 6 H 1.07998 * 119.99894 * 37.58024 * 5 4 3 7 7 C 1.38814 * 119.99892 * 217.57724 * 5 4 3 8 8 N 1.31613 * 119.99902 * 21.43123 * 7 5 4 9 9 Si 1.86794 * 119.99756 * 201.42857 * 7 5 4 10 10 H 1.48497 * 109.47346 * 89.99868 * 9 7 5 11 11 H 1.48504 * 109.47164 * 210.00099 * 9 7 5 12 12 H 1.48504 * 109.47098 * 330.00148 * 9 7 5 13 13 C 1.46497 * 120.00029 * 95.31334 * 4 3 2 14 14 C 1.53007 * 109.46754 * 269.99990 * 13 4 3 15 15 N 1.46497 * 109.46754 * 180.02562 * 14 13 4 16 16 C 1.34783 * 119.99935 * 179.72330 * 15 14 13 17 17 O 1.21288 * 119.99658 * 0.02562 * 16 15 14 18 18 C 1.50690 * 120.00146 * 179.97438 * 16 15 14 19 19 C 1.50705 * 109.47240 * 180.02562 * 18 16 15 20 20 N 1.32619 * 125.18514 * 90.02399 * 19 18 16 21 21 C 1.32822 * 109.75308 * 179.97438 * 20 19 18 22 22 N 1.33829 * 132.49659 * 180.02562 * 21 20 19 23 23 C 1.31351 * 120.86076 * 179.97438 * 22 21 20 24 24 C 1.40047 * 120.31401 * 0.02562 * 23 22 21 25 25 C 1.35782 * 119.23784 * 359.97438 * 24 23 22 26 26 N 1.35974 * 119.02359 * 0.02562 * 25 24 23 27 27 N 1.31182 * 125.18607 * 269.72227 * 19 18 16 28 28 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47152 * 299.99744 * 1 2 3 30 30 H 1.09001 * 109.47166 * 60.00099 * 1 2 3 31 31 H 1.08997 * 109.47152 * 240.00256 * 2 1 3 32 32 H 1.09001 * 109.47166 * 119.99901 * 2 1 3 33 33 H 1.09001 * 109.47262 * 60.00027 * 3 2 1 34 34 H 1.09004 * 109.47427 * 300.00145 * 3 2 1 35 35 H 0.97004 * 120.00241 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47368 * 150.00048 * 13 4 3 37 37 H 1.09008 * 109.47289 * 29.99573 * 13 4 3 38 38 H 1.09001 * 109.46853 * 60.00145 * 14 13 4 39 39 H 1.08995 * 109.47172 * 299.99742 * 14 13 4 40 40 H 0.97004 * 120.00627 * 359.97438 * 15 14 13 41 41 H 1.09004 * 109.47282 * 299.99976 * 18 16 15 42 42 H 1.08994 * 109.47521 * 60.00486 * 18 16 15 43 43 H 1.07997 * 119.84308 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.37803 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.48233 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1818 6 1 3.8170 0.6875 1.9636 7 6 5.3613 2.0514 1.3741 8 7 5.6020 3.1240 0.6503 9 14 6.5968 1.4960 2.6603 10 1 7.5669 0.5571 2.0419 11 1 7.3219 2.6774 3.1929 12 1 5.8836 0.8118 3.7688 13 6 4.2381 1.5597 -1.2623 14 6 4.4933 0.1642 -1.8353 15 7 5.2268 0.2814 -3.0980 16 6 5.5690 -0.8271 -3.7840 17 8 5.2692 -1.9217 -3.3561 18 6 6.3231 -0.7065 -5.0831 19 6 6.5800 -2.0814 -5.6443 20 7 5.7721 -2.7330 -6.4698 21 6 6.2965 -3.9157 -6.7707 22 7 5.8751 -4.9201 -7.5481 23 6 6.5923 -6.0119 -7.6862 24 6 7.8160 -6.1429 -7.0179 25 6 8.2516 -5.1289 -6.2269 26 7 7.4860 -4.0119 -6.1048 27 7 7.6395 -2.8137 -5.3953 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 6.4208 3.6263 0.7849 36 1 5.1903 2.0593 -1.0847 37 1 3.6492 2.1416 -1.9716 38 1 3.5409 -0.3354 -2.0130 39 1 5.0820 -0.4176 -1.1262 40 1 5.4695 1.1567 -3.4386 41 1 5.7322 -0.1289 -5.7940 42 1 7.2732 -0.2026 -4.9063 43 1 6.2362 -6.8125 -8.3175 44 1 8.4067 -7.0399 -7.1310 45 1 9.1925 -5.2085 -5.7026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493331081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:17 Heat of formation + Delta-G solvation = 91.113534 kcal Electronic energy + Delta-G solvation = -27515.016699 eV Core-core repulsion = 23569.836836 eV Total energy + Delta-G solvation = -3945.179863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.01173 -40.87866 -39.72915 -38.25522 -35.80673 -35.64197 -34.62181 -33.59220 -32.61468 -31.82991 -30.97759 -29.26176 -27.35262 -25.78953 -25.27559 -24.72839 -23.00733 -22.44486 -21.90123 -21.32638 -19.50081 -19.17695 -18.84039 -18.19470 -17.42586 -17.33275 -17.02888 -16.76662 -16.53142 -15.96626 -15.69948 -15.47738 -14.99913 -14.80587 -14.57846 -14.52992 -14.31862 -14.17206 -13.77790 -13.73701 -13.37335 -13.23077 -13.09864 -13.05547 -12.93451 -12.64383 -12.53725 -12.23175 -12.03903 -11.89163 -11.68248 -11.39570 -11.37107 -11.15993 -11.03561 -10.67092 -10.54642 -10.08297 -9.93122 -8.60258 -7.86828 -5.49751 -0.51481 -0.34918 0.85072 1.27956 1.42347 1.46401 1.53037 1.53672 2.08465 2.31536 2.40283 2.50319 2.79412 3.20379 3.35075 3.49299 3.67176 3.88168 3.95840 4.13299 4.20427 4.26816 4.32885 4.37183 4.40241 4.52390 4.53221 4.66219 4.72594 4.83602 4.84831 4.97801 5.02015 5.06319 5.14656 5.21862 5.24600 5.36196 5.37719 5.41679 5.60586 5.65043 5.73487 6.36698 6.43589 6.53725 6.76966 7.13004 7.20441 7.81456 8.33815 9.08988 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002499 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.852181 B =11203.676649 C =12247.501583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.270 4.270 6 H 0.049 0.951 7 C -0.027 4.027 8 N -0.908 5.908 9 Si 0.950 3.050 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.145 3.855 14 C 0.121 3.879 15 N -0.705 5.705 16 C 0.517 3.483 17 O -0.592 6.592 18 C -0.045 4.045 19 C 0.286 3.714 20 N -0.560 5.560 21 C 0.419 3.581 22 N -0.496 5.496 23 C 0.213 3.787 24 C -0.188 4.188 25 C 0.141 3.859 26 N -0.334 5.334 27 N -0.351 5.351 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.051 0.949 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.026 0.974 40 H 0.418 0.582 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.241 0.759 44 H 0.234 0.766 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -15.906 -19.423 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.021 3.979 4 N -0.318 5.318 5 C -0.401 4.401 6 H 0.067 0.933 7 C -0.225 4.225 8 N -0.551 5.551 9 Si 0.778 3.222 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.357 5.357 16 C 0.303 3.697 17 O -0.472 6.472 18 C -0.086 4.086 19 C 0.004 3.996 20 N -0.293 5.293 21 C 0.059 3.941 22 N -0.212 5.212 23 C 0.030 3.970 24 C -0.212 4.212 25 C 0.006 3.994 26 N -0.113 5.113 27 N -0.183 5.183 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.255 0.745 41 H 0.176 0.824 42 H 0.173 0.827 43 H 0.257 0.743 44 H 0.250 0.750 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.256 -15.715 -19.038 25.240 hybrid contribution 1.466 -0.078 1.211 1.903 sum 6.723 -15.793 -17.828 24.748 Atomic orbital electron populations 1.21652 0.94184 1.01724 1.02097 1.22023 0.96509 0.98958 1.00062 1.21044 0.83354 0.94342 0.99185 1.43851 1.00877 1.85030 1.02035 1.19134 1.06335 1.19924 0.94679 0.93287 1.25732 1.02015 0.94722 1.00033 1.70071 1.25916 1.15385 1.43753 0.85554 0.79622 0.77313 0.79681 1.21733 1.21284 1.19804 1.20945 0.99395 0.91643 0.86197 1.21938 0.94111 1.01137 0.83365 1.45813 1.57191 1.09310 1.23398 1.20674 0.79118 0.84000 0.85948 1.90703 1.56806 1.28669 1.71060 1.20172 1.05109 0.89044 0.94324 1.23883 0.87131 0.97270 0.91320 1.70538 1.31182 1.04786 1.22808 1.22946 0.83710 0.94493 0.92972 1.68125 1.34352 1.00960 1.17802 1.24680 0.88851 0.92149 0.91316 1.22688 0.99256 1.01169 0.98054 1.23163 0.97656 0.81744 0.96838 1.48846 1.17630 1.13746 1.31060 1.78353 1.25132 0.93146 1.21708 0.92433 0.92414 0.92023 0.93928 0.94423 0.94509 0.93085 0.93590 0.90538 0.93355 0.93734 0.95508 0.74485 0.82411 0.82725 0.74265 0.74975 0.77165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.91 71.98 0.71 -3.33 16 2 C -0.14 -5.13 6.23 30.59 0.19 -4.94 16 3 C 0.15 6.16 5.72 86.38 0.49 6.65 16 4 N -0.60 -29.54 2.43 -701.98 -1.71 -31.25 16 5 C -0.27 -14.86 9.45 84.03 0.79 -14.07 16 6 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 7 C -0.03 -1.46 4.95 84.86 0.42 -1.04 16 8 N -0.91 -50.96 11.47 21.65 0.25 -50.71 16 9 Si 0.95 44.86 29.60 68.60 2.03 46.89 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.15 6.52 5.45 86.38 0.47 6.99 16 14 C 0.12 5.13 6.00 86.38 0.52 5.65 16 15 N -0.70 -23.74 5.56 -463.05 -2.57 -26.31 16 16 C 0.52 18.40 7.82 87.65 0.69 19.09 16 17 O -0.59 -27.54 16.03 -3.05 -0.05 -27.59 16 18 C -0.04 -1.17 6.33 29.10 0.18 -0.98 16 19 C 0.29 9.49 6.59 138.68 0.91 10.41 16 20 N -0.56 -20.15 11.25 -191.23 -2.15 -22.30 16 21 C 0.42 12.88 8.99 261.60 2.35 15.24 16 22 N -0.50 -11.57 10.48 -197.63 -2.07 -13.64 16 23 C 0.21 1.87 11.27 85.20 0.96 2.83 16 24 C -0.19 -0.78 10.07 22.14 0.22 -0.56 16 25 C 0.14 1.83 11.32 83.48 0.94 2.77 16 26 N -0.33 -8.88 3.91 -197.70 -0.77 -9.65 16 27 N -0.35 -11.39 12.78 -51.44 -0.66 -12.05 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.68 6.64 -2.39 -0.02 1.66 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 34 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 35 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.08 3.84 5.52 -2.39 -0.01 3.83 16 37 H 0.05 1.97 7.86 -2.38 -0.02 1.95 16 38 H 0.04 1.96 6.64 -2.39 -0.02 1.94 16 39 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.42 10.90 8.47 -92.71 -0.79 10.12 16 41 H 0.16 3.06 8.14 -2.38 -0.02 3.04 16 42 H 0.16 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.24 -0.61 8.06 -2.91 -0.02 -0.63 16 44 H 0.23 -1.81 8.06 -2.91 -0.02 -1.83 16 45 H 0.21 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -90.93 383.37 2.39 -88.53 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.23 Total: 13.37 kcal Atomic # 6 Polarization: 34.83 SS G_CDS: 9.86 Total: 44.70 kcal Atomic # 7 Polarization: -156.22 SS G_CDS: -9.69 Total: -165.90 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -90.93 2.39 -88.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493331081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.644 kcal (2) G-P(sol) polarization free energy of solvation -90.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds