Wall clock time and date at job start Tue Mar 31 2020 18:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47379 * 2 1 4 4 N 1.46504 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99722 * 264.11392 * 4 3 2 6 6 H 1.08011 * 119.99476 * 188.01850 * 5 4 3 7 7 C 1.38816 * 120.00489 * 8.01681 * 5 4 3 8 8 N 1.31617 * 119.99499 * 25.64808 * 7 5 4 9 9 Si 1.86799 * 119.99966 * 205.64718 * 7 5 4 10 10 H 1.48494 * 109.47046 * 84.98940 * 9 7 5 11 11 H 1.48504 * 109.46899 * 204.98777 * 9 7 5 12 12 H 1.48494 * 109.47348 * 324.98490 * 9 7 5 13 13 C 1.46498 * 119.99772 * 84.11897 * 4 3 2 14 14 C 1.52998 * 109.46956 * 269.99371 * 13 4 3 15 15 N 1.46499 * 109.47498 * 180.02562 * 14 13 4 16 16 C 1.34777 * 120.00505 * 180.02562 * 15 14 13 17 17 O 1.21527 * 119.99639 * 0.02562 * 16 15 14 18 18 C 1.48121 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.33466 * 125.32704 * 0.02562 * 18 16 15 20 20 C 1.32496 * 109.75493 * 179.97438 * 19 18 16 21 21 N 1.33995 * 132.34303 * 179.97438 * 20 19 18 22 22 C 1.31257 * 120.87898 * 180.02562 * 21 20 19 23 23 C 1.40168 * 120.36125 * 359.66536 * 22 21 20 24 24 C 1.35691 * 119.26531 * 0.63786 * 23 22 21 25 25 C 1.50700 * 120.47828 * 179.67627 * 24 23 22 26 26 N 1.36164 * 119.03103 * 359.40184 * 24 23 22 27 27 N 1.31989 * 125.32266 * 179.97438 * 18 16 15 28 28 H 1.08998 * 109.47461 * 59.99534 * 1 2 3 29 29 H 1.09005 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47110 * 299.99899 * 1 2 3 31 31 H 1.09003 * 109.47110 * 240.00101 * 2 1 3 32 32 H 1.08998 * 109.47461 * 120.00465 * 2 1 3 33 33 H 1.08994 * 109.46848 * 60.00221 * 3 2 1 34 34 H 1.08997 * 109.46990 * 300.00117 * 3 2 1 35 35 H 0.97001 * 119.99483 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47025 * 150.00333 * 13 4 3 37 37 H 1.08996 * 109.47222 * 29.99406 * 13 4 3 38 38 H 1.09006 * 109.47148 * 60.00391 * 14 13 4 39 39 H 1.09002 * 109.47369 * 300.00463 * 14 13 4 40 40 H 0.97001 * 119.99556 * 0.02562 * 15 14 13 41 41 H 1.07999 * 119.81677 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.37111 * 180.33402 * 23 22 21 43 43 H 1.09007 * 109.47187 * 269.71848 * 25 24 23 44 44 H 1.09006 * 109.46946 * 149.72922 * 25 24 23 45 45 H 1.08991 * 109.47625 * 29.72373 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5638 1.1788 6 1 5.2623 1.6940 1.1695 7 6 3.5068 1.5196 2.3863 8 7 2.3567 0.8850 2.4686 9 14 4.2196 2.3607 3.8942 10 1 3.8328 3.7943 3.8905 11 1 3.6926 1.7088 5.1200 12 1 5.7000 2.2473 3.8708 13 6 4.2369 1.3125 -1.2630 14 6 4.4918 -0.1676 -1.5548 15 7 5.2243 -0.2975 -2.8168 16 6 5.5607 -1.5184 -3.2783 17 8 5.2560 -2.5114 -2.6475 18 6 6.3007 -1.6497 -4.5546 19 7 6.6870 -0.6348 -5.3307 20 6 7.3250 -1.1018 -6.3939 21 7 7.8924 -0.4944 -7.4449 22 6 8.4764 -1.1915 -8.3914 23 6 8.5226 -2.5904 -8.3150 24 6 7.9457 -3.2165 -7.2584 25 6 7.9729 -4.7195 -7.1525 26 7 7.3467 -2.4666 -6.2925 27 7 6.6822 -2.7885 -5.1019 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.8790 0.8544 3.3122 36 1 5.1895 1.8369 -1.1863 37 1 3.6475 1.7459 -2.0710 38 1 3.5393 -0.6921 -1.6314 39 1 5.0812 -0.6010 -0.7467 40 1 5.4671 0.4952 -3.3204 41 1 8.9287 -0.6842 -9.2306 42 1 9.0077 -3.1638 -9.0910 43 1 7.0895 -5.1340 -7.6383 44 1 7.9795 -5.0096 -6.1018 45 1 8.8691 -5.1020 -7.6407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493339948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:09 Heat of formation + Delta-G solvation = 130.435819 kcal Electronic energy + Delta-G solvation = -27640.091556 eV Core-core repulsion = 23696.616836 eV Total energy + Delta-G solvation = -3943.474721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.30419 -39.83506 -38.70073 -36.55374 -35.71315 -34.49240 -32.33317 -31.89691 -31.32690 -31.28466 -29.04958 -28.23735 -25.51256 -25.43416 -24.60945 -23.25630 -22.21398 -20.79260 -20.48635 -19.83978 -18.98204 -18.43740 -17.29106 -17.15865 -16.78132 -16.06840 -15.53780 -15.17365 -14.85714 -14.66052 -14.19817 -13.90035 -13.85255 -13.81979 -13.54660 -13.14785 -13.05605 -12.99369 -12.88796 -12.64499 -12.35558 -11.91744 -11.56853 -11.30667 -11.02688 -10.83696 -10.65390 -10.59440 -10.49724 -10.37629 -10.22536 -10.14270 -9.94409 -9.87810 -9.68199 -9.20567 -9.18659 -8.68743 -8.31799 -6.91598 -5.75823 -3.07160 -0.11820 0.20546 1.32031 1.58176 2.68452 2.82250 3.02128 3.33879 3.42622 3.50403 3.50484 3.58751 3.76858 4.18014 4.36942 4.53034 4.64633 4.69873 4.73899 4.79032 5.17544 5.33513 5.41921 5.55648 5.58767 5.65676 5.76031 5.84744 5.91832 6.22155 6.26890 6.32630 6.53318 6.60632 6.68930 6.72766 6.85305 6.94540 7.02130 7.22324 7.30781 7.32811 7.70306 7.71412 7.82220 8.13869 8.24264 8.36758 9.24405 9.85924 10.30235 11.27523 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.002242 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.361185 B =12488.254360 C =12873.380157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.170 3.830 4 N -0.590 5.590 5 C -0.256 4.256 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.142 3.858 14 C 0.088 3.912 15 N -0.692 5.692 16 C 0.600 3.400 17 O -0.508 6.508 18 C 0.248 3.752 19 N -0.498 5.498 20 C 0.444 3.556 21 N -0.454 5.454 22 C 0.211 3.789 23 C -0.230 4.230 24 C 0.206 3.794 25 C -0.125 4.125 26 N -0.329 5.329 27 N -0.270 5.270 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.004 0.996 35 H 0.252 0.748 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.193 0.807 42 H 0.175 0.825 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.494 -7.508 -25.146 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.045 3.955 4 N -0.310 5.310 5 C -0.385 4.385 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.037 4.037 15 N -0.344 5.344 16 C 0.379 3.621 17 O -0.380 6.380 18 C -0.036 4.036 19 N -0.232 5.232 20 C 0.084 3.916 21 N -0.169 5.169 22 C 0.025 3.975 23 C -0.255 4.255 24 C 0.088 3.912 25 C -0.182 4.182 26 N -0.110 5.110 27 N -0.103 5.103 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.244 0.756 41 H 0.210 0.790 42 H 0.193 0.807 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.677 -7.576 -23.721 27.094 hybrid contribution 0.679 -0.261 0.217 0.759 sum 11.356 -7.836 -23.504 27.254 Atomic orbital electron populations 1.21625 0.98566 0.99311 1.00009 1.22235 0.92945 1.00504 1.01401 1.20947 0.81483 0.94537 0.98507 1.44265 1.01946 1.83381 1.01382 1.19287 0.92302 1.43414 0.83451 0.90681 1.24728 0.97589 1.00094 0.97296 1.70166 1.17197 1.41167 1.24976 0.86365 0.78422 0.79891 0.82556 1.21593 1.22007 1.20768 1.20979 0.96729 0.91334 0.89592 1.22989 0.95920 1.02396 0.82353 1.46014 1.56186 1.06929 1.25308 1.16431 0.79545 0.85009 0.81149 1.90870 1.53476 1.37194 1.56507 1.24511 0.96518 0.85854 0.96754 1.70856 1.20071 1.29032 1.03289 1.22745 0.96014 0.78376 0.94495 1.68091 1.12104 1.36496 1.00173 1.23641 0.88511 0.90952 0.94375 1.21835 1.07111 0.96495 1.00069 1.20974 0.88948 0.96039 0.85258 1.21110 1.04922 0.86177 1.05993 1.49075 1.36415 1.09234 1.16323 1.78918 1.17649 1.19810 0.93925 0.95067 0.94824 0.92993 0.96014 0.88312 0.89158 0.97747 0.93719 0.92842 0.93538 0.90993 0.90849 0.75618 0.79020 0.80736 0.88358 0.88924 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.91 37.15 0.37 -2.33 16 2 C -0.13 -3.00 5.61 -26.73 -0.15 -3.15 16 3 C 0.17 4.02 4.92 -4.04 -0.02 4.00 16 4 N -0.59 -14.22 2.54 -173.24 -0.44 -14.66 16 5 C -0.26 -6.79 9.70 -15.06 -0.15 -6.93 16 6 H 0.08 1.97 7.94 -52.48 -0.42 1.55 16 7 C 0.00 0.02 4.89 -17.43 -0.09 -0.06 16 8 N -0.89 -24.42 8.62 55.49 0.48 -23.94 16 9 Si 0.90 21.51 29.62 -169.99 -5.04 16.47 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.14 2.82 5.82 -4.04 -0.02 2.80 16 14 C 0.09 1.73 5.88 -4.04 -0.02 1.71 16 15 N -0.69 -11.79 5.55 -61.16 -0.34 -12.13 16 16 C 0.60 11.08 7.84 -12.20 -0.10 10.99 16 17 O -0.51 -11.02 17.07 5.34 0.09 -10.92 16 18 C 0.25 4.17 7.92 -156.79 -1.24 2.93 16 19 N -0.50 -7.92 10.89 -12.24 -0.13 -8.06 16 20 C 0.44 6.08 8.99 -323.04 -2.90 3.17 16 21 N -0.45 -4.83 10.48 -13.79 -0.14 -4.97 16 22 C 0.21 1.06 11.27 -17.07 -0.19 0.87 16 23 C -0.23 -0.85 9.72 -39.77 -0.39 -1.24 16 24 C 0.21 1.49 6.86 -81.58 -0.56 0.93 16 25 C -0.13 -0.55 10.13 36.01 0.36 -0.18 16 26 N -0.33 -4.07 3.91 -10.07 -0.04 -4.11 16 27 N -0.27 -4.27 12.67 32.02 0.41 -3.86 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.48 5.97 -51.93 -0.31 0.17 16 32 H 0.10 2.60 6.33 -51.93 -0.33 2.28 16 33 H 0.09 2.37 5.85 -51.93 -0.30 2.07 16 34 H 0.00 0.09 7.98 -51.93 -0.41 -0.32 16 35 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 37 H 0.05 0.84 7.95 -51.93 -0.41 0.43 16 38 H 0.07 1.53 5.92 -51.93 -0.31 1.22 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.41 6.09 8.14 -40.82 -0.33 5.75 16 41 H 0.19 0.05 8.06 -52.49 -0.42 -0.37 16 42 H 0.18 -0.15 8.06 -52.49 -0.42 -0.57 16 43 H 0.10 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.10 8.09 -51.93 -0.42 -0.32 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -34.67 377.59 -10.74 -45.41 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.18 Total: 1.58 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: -5.09 Total: 13.52 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -0.21 Total: -71.74 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.04 Total: 16.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.67 -10.74 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493339948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.841 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds