Wall clock time and date at job start Tue Mar 31 2020 18:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47379 * 2 1 4 4 N 1.46504 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99722 * 264.11392 * 4 3 2 6 6 H 1.08011 * 119.99476 * 188.01850 * 5 4 3 7 7 C 1.38816 * 120.00489 * 8.01681 * 5 4 3 8 8 N 1.31617 * 119.99499 * 25.64808 * 7 5 4 9 9 Si 1.86799 * 119.99966 * 205.64718 * 7 5 4 10 10 H 1.48494 * 109.47046 * 84.98940 * 9 7 5 11 11 H 1.48504 * 109.46899 * 204.98777 * 9 7 5 12 12 H 1.48494 * 109.47348 * 324.98490 * 9 7 5 13 13 C 1.46498 * 119.99772 * 84.11897 * 4 3 2 14 14 C 1.52998 * 109.46956 * 269.99371 * 13 4 3 15 15 N 1.46499 * 109.47498 * 180.02562 * 14 13 4 16 16 C 1.34777 * 120.00505 * 180.02562 * 15 14 13 17 17 O 1.21527 * 119.99639 * 0.02562 * 16 15 14 18 18 C 1.48121 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.33466 * 125.32704 * 0.02562 * 18 16 15 20 20 C 1.32496 * 109.75493 * 179.97438 * 19 18 16 21 21 N 1.33995 * 132.34303 * 179.97438 * 20 19 18 22 22 C 1.31257 * 120.87898 * 180.02562 * 21 20 19 23 23 C 1.40168 * 120.36125 * 359.66536 * 22 21 20 24 24 C 1.35691 * 119.26531 * 0.63786 * 23 22 21 25 25 C 1.50700 * 120.47828 * 179.67627 * 24 23 22 26 26 N 1.36164 * 119.03103 * 359.40184 * 24 23 22 27 27 N 1.31989 * 125.32266 * 179.97438 * 18 16 15 28 28 H 1.08998 * 109.47461 * 59.99534 * 1 2 3 29 29 H 1.09005 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47110 * 299.99899 * 1 2 3 31 31 H 1.09003 * 109.47110 * 240.00101 * 2 1 3 32 32 H 1.08998 * 109.47461 * 120.00465 * 2 1 3 33 33 H 1.08994 * 109.46848 * 60.00221 * 3 2 1 34 34 H 1.08997 * 109.46990 * 300.00117 * 3 2 1 35 35 H 0.97001 * 119.99483 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47025 * 150.00333 * 13 4 3 37 37 H 1.08996 * 109.47222 * 29.99406 * 13 4 3 38 38 H 1.09006 * 109.47148 * 60.00391 * 14 13 4 39 39 H 1.09002 * 109.47369 * 300.00463 * 14 13 4 40 40 H 0.97001 * 119.99556 * 0.02562 * 15 14 13 41 41 H 1.07999 * 119.81677 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.37111 * 180.33402 * 23 22 21 43 43 H 1.09007 * 109.47187 * 269.71848 * 25 24 23 44 44 H 1.09006 * 109.46946 * 149.72922 * 25 24 23 45 45 H 1.08991 * 109.47625 * 29.72373 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5638 1.1788 6 1 5.2623 1.6940 1.1695 7 6 3.5068 1.5196 2.3863 8 7 2.3567 0.8850 2.4686 9 14 4.2196 2.3607 3.8942 10 1 3.8328 3.7943 3.8905 11 1 3.6926 1.7088 5.1200 12 1 5.7000 2.2473 3.8708 13 6 4.2369 1.3125 -1.2630 14 6 4.4918 -0.1676 -1.5548 15 7 5.2243 -0.2975 -2.8168 16 6 5.5607 -1.5184 -3.2783 17 8 5.2560 -2.5114 -2.6475 18 6 6.3007 -1.6497 -4.5546 19 7 6.6870 -0.6348 -5.3307 20 6 7.3250 -1.1018 -6.3939 21 7 7.8924 -0.4944 -7.4449 22 6 8.4764 -1.1915 -8.3914 23 6 8.5226 -2.5904 -8.3150 24 6 7.9457 -3.2165 -7.2584 25 6 7.9729 -4.7195 -7.1525 26 7 7.3467 -2.4666 -6.2925 27 7 6.6822 -2.7885 -5.1019 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.8790 0.8544 3.3122 36 1 5.1895 1.8369 -1.1863 37 1 3.6475 1.7459 -2.0710 38 1 3.5393 -0.6921 -1.6314 39 1 5.0812 -0.6010 -0.7467 40 1 5.4671 0.4952 -3.3204 41 1 8.9287 -0.6842 -9.2306 42 1 9.0077 -3.1638 -9.0910 43 1 7.0895 -5.1340 -7.6383 44 1 7.9795 -5.0096 -6.1018 45 1 8.8691 -5.1020 -7.6407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493339948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:08 Heat of formation + Delta-G solvation = 108.132679 kcal Electronic energy + Delta-G solvation = -27641.058693 eV Core-core repulsion = 23696.616836 eV Total energy + Delta-G solvation = -3944.441858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.17742 -41.06449 -39.70940 -38.36181 -36.40643 -36.07996 -33.74139 -33.42716 -32.83162 -32.24232 -29.88248 -29.52034 -27.35900 -26.73461 -25.30853 -24.79572 -23.15645 -22.49445 -21.94641 -21.48732 -19.87054 -19.31309 -18.78221 -18.29820 -18.06547 -17.14255 -16.74766 -16.61459 -16.53835 -15.71254 -15.49748 -15.26829 -15.15559 -14.74019 -14.62393 -14.39626 -14.35403 -14.12390 -13.86259 -13.82684 -13.42086 -13.35783 -13.07504 -12.81600 -12.68114 -12.64093 -12.40531 -12.18470 -11.89183 -11.75302 -11.71790 -11.63361 -11.52926 -11.12167 -11.09421 -11.00161 -10.34598 -10.23279 -9.95159 -8.86689 -7.79089 -5.11703 -0.77943 -0.52297 0.51334 0.53091 1.50071 1.52210 1.57672 1.60455 1.87116 2.11732 2.29303 2.55828 2.83190 3.18579 3.28661 3.29185 3.75699 3.84008 4.08387 4.17785 4.24023 4.27064 4.41522 4.47951 4.51962 4.54553 4.63319 4.66928 4.70639 4.85692 4.95869 4.96863 5.00150 5.02570 5.12232 5.19803 5.23517 5.33188 5.45722 5.52700 5.66075 5.88182 6.07338 6.20256 6.28236 6.36969 6.56138 6.84088 7.22648 7.91607 8.31411 9.21833 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.002242 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.361185 B =12488.254360 C =12873.380157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C 0.174 3.826 4 N -0.605 5.605 5 C -0.265 4.265 6 H 0.073 0.927 7 C -0.046 4.046 8 N -0.907 5.907 9 Si 0.955 3.045 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.278 1.278 13 C 0.145 3.855 14 C 0.109 3.891 15 N -0.679 5.679 16 C 0.604 3.396 17 O -0.550 6.550 18 C 0.230 3.770 19 N -0.527 5.527 20 C 0.429 3.571 21 N -0.488 5.488 22 C 0.225 3.775 23 C -0.186 4.186 24 C 0.167 3.833 25 C -0.121 4.121 26 N -0.330 5.330 27 N -0.297 5.297 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.022 0.978 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.421 0.579 41 H 0.249 0.751 42 H 0.237 0.763 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.513 -7.497 -29.418 33.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.049 3.951 4 N -0.325 5.325 5 C -0.395 4.395 6 H 0.091 0.909 7 C -0.242 4.242 8 N -0.553 5.553 9 Si 0.785 3.215 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.204 1.204 13 C 0.018 3.982 14 C -0.016 4.016 15 N -0.331 5.331 16 C 0.384 3.616 17 O -0.426 6.426 18 C -0.054 4.054 19 N -0.263 5.263 20 C 0.069 3.931 21 N -0.205 5.205 22 C 0.042 3.958 23 C -0.210 4.210 24 C 0.052 3.948 25 C -0.178 4.178 26 N -0.111 5.111 27 N -0.133 5.133 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.259 0.741 41 H 0.264 0.736 42 H 0.253 0.747 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.749 -7.557 -28.086 31.756 hybrid contribution 0.263 -0.336 1.178 1.253 sum 13.012 -7.894 -26.908 30.913 Atomic orbital electron populations 1.21526 0.96088 1.00369 1.00655 1.22038 0.95136 0.99587 0.99449 1.20848 0.81461 0.94772 0.98065 1.44427 1.02383 1.83684 1.02033 1.19498 0.92416 1.42985 0.84587 0.90927 1.25361 0.98390 1.00883 0.99545 1.70333 1.18121 1.41920 1.24954 0.85460 0.77819 0.78670 0.79535 1.21430 1.22719 1.20367 1.21076 0.97291 0.91192 0.88673 1.22488 0.94756 1.01871 0.82531 1.45732 1.55606 1.07326 1.24427 1.16614 0.78915 0.84480 0.81598 1.90827 1.55239 1.38427 1.58077 1.23829 0.98142 0.86850 0.96609 1.70670 1.21655 1.29452 1.04547 1.22950 0.96287 0.78977 0.94897 1.68247 1.14062 1.37494 1.00715 1.24791 0.85388 0.91999 0.93578 1.22644 1.03194 0.96217 0.98900 1.21972 0.89904 0.97573 0.85379 1.21223 1.07361 0.84443 1.04740 1.49108 1.36408 1.09599 1.16033 1.78712 1.18742 1.19986 0.95849 0.92757 0.93597 0.93894 0.95896 0.92222 0.91900 0.95571 0.94396 0.91811 0.90983 0.92613 0.93860 0.74142 0.73561 0.74668 0.87581 0.91865 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.91 71.98 0.71 -4.29 16 2 C -0.12 -5.70 5.61 30.59 0.17 -5.53 16 3 C 0.17 8.29 4.92 86.38 0.42 8.71 16 4 N -0.60 -29.61 2.54 -702.01 -1.78 -31.39 16 5 C -0.27 -14.36 9.70 84.03 0.81 -13.55 16 6 H 0.07 3.88 7.94 -2.90 -0.02 3.86 16 7 C -0.05 -2.53 4.89 84.86 0.41 -2.11 16 8 N -0.91 -51.39 8.62 21.65 0.19 -51.21 16 9 Si 0.96 45.23 29.62 68.60 2.03 47.26 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.15 5.77 5.82 86.38 0.50 6.28 16 14 C 0.11 4.46 5.88 86.38 0.51 4.97 16 15 N -0.68 -24.10 5.55 -465.69 -2.59 -26.69 16 16 C 0.60 23.71 7.84 86.87 0.68 24.39 16 17 O -0.55 -25.53 17.07 -3.80 -0.06 -25.60 16 18 C 0.23 8.18 7.92 137.39 1.09 9.27 16 19 N -0.53 -17.35 10.89 -192.62 -2.10 -19.44 16 20 C 0.43 11.59 8.99 261.57 2.35 13.94 16 21 N -0.49 -9.28 10.48 -197.54 -2.07 -11.35 16 22 C 0.22 1.12 11.27 85.25 0.96 2.08 16 23 C -0.19 -0.31 9.72 22.15 0.22 -0.10 16 24 C 0.17 1.95 6.86 41.30 0.28 2.24 16 25 C -0.12 -0.74 10.13 71.24 0.72 -0.02 16 26 N -0.33 -8.05 3.91 -185.76 -0.73 -8.78 16 27 N -0.30 -9.90 12.67 -52.61 -0.67 -10.56 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.02 1.03 5.97 -2.39 -0.01 1.02 16 32 H 0.06 3.27 6.33 -2.39 -0.02 3.25 16 33 H 0.06 3.37 5.85 -2.39 -0.01 3.35 16 34 H 0.03 1.12 7.98 -2.39 -0.02 1.10 16 35 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 37 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 38 H 0.06 2.47 5.92 -2.38 -0.01 2.45 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.42 12.86 8.14 -92.71 -0.76 12.11 16 41 H 0.25 -1.64 8.06 -2.91 -0.02 -1.67 16 42 H 0.24 -2.46 8.06 -2.91 -0.02 -2.49 16 43 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.14 -0.41 8.09 -2.39 -0.02 -0.43 16 Total: -1.00 -83.58 377.59 2.35 -81.23 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.27 Total: 10.23 kcal Atomic # 6 Polarization: 36.44 SS G_CDS: 9.85 Total: 46.29 kcal Atomic # 7 Polarization: -149.67 SS G_CDS: -9.74 Total: -159.41 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -83.58 2.35 -81.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493339948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.359 kcal (2) G-P(sol) polarization free energy of solvation -83.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds