Wall clock time and date at job start Tue Mar 31 2020 18:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47641 * 2 1 4 4 N 1.46512 * 109.46844 * 120.00069 * 2 1 3 5 5 C 1.36939 * 119.99565 * 301.89606 * 4 2 1 6 6 H 1.08001 * 120.00084 * 324.86497 * 5 4 2 7 7 C 1.38815 * 119.99702 * 144.85720 * 5 4 2 8 8 N 1.31624 * 119.99596 * 157.16422 * 7 5 4 9 9 Si 1.86804 * 120.00031 * 337.17091 * 7 5 4 10 10 H 1.48498 * 109.47158 * 95.35292 * 9 7 5 11 11 H 1.48494 * 109.46800 * 215.34971 * 9 7 5 12 12 H 1.48498 * 109.46756 * 335.34939 * 9 7 5 13 13 C 1.46491 * 120.00357 * 121.89690 * 4 2 1 14 14 C 1.53003 * 109.47280 * 89.99596 * 13 4 2 15 15 C 1.52992 * 109.47498 * 180.02562 * 14 13 4 16 16 N 1.46498 * 109.47354 * 180.02562 * 15 14 13 17 17 C 1.34776 * 120.00002 * 179.97438 * 16 15 14 18 18 O 1.21619 * 120.00170 * 0.02562 * 17 16 15 19 19 C 1.47317 * 119.99938 * 179.97438 * 17 16 15 20 20 C 1.39002 * 120.90520 * 0.02562 * 19 17 16 21 21 C 1.39718 * 119.29058 * 180.22692 * 20 19 17 22 22 C 1.35251 * 121.08127 * 359.51517 * 21 20 19 23 23 N 1.35721 * 121.57477 * 0.46272 * 22 21 20 24 24 N 1.40204 * 134.09051 * 179.75436 * 23 22 21 25 25 N 1.29019 * 106.95786 * 180.02562 * 24 23 22 26 26 N 1.28594 * 110.78820 * 0.02562 * 25 24 23 27 27 C 1.32046 * 110.21338 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47085 * 305.33581 * 1 2 3 29 29 H 1.09006 * 109.47088 * 65.33146 * 1 2 3 30 30 H 1.08997 * 109.47786 * 185.33195 * 1 2 3 31 31 H 1.08995 * 109.47244 * 239.99199 * 2 1 3 32 32 H 1.09003 * 109.47479 * 175.18697 * 3 2 1 33 33 H 1.09000 * 109.47247 * 295.18897 * 3 2 1 34 34 H 1.09004 * 109.47501 * 55.18489 * 3 2 1 35 35 H 0.97001 * 119.99254 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.47255 * 330.00403 * 13 4 2 37 37 H 1.08992 * 109.47608 * 210.00220 * 13 4 2 38 38 H 1.09009 * 109.46775 * 59.99975 * 14 13 4 39 39 H 1.09006 * 109.47304 * 300.00725 * 14 13 4 40 40 H 1.09003 * 109.46826 * 60.00077 * 15 14 13 41 41 H 1.09006 * 109.47325 * 300.00577 * 15 14 13 42 42 H 0.97000 * 120.00167 * 0.02562 * 16 15 14 43 43 H 1.07994 * 120.35593 * 359.95918 * 20 19 17 44 44 H 1.08004 * 119.45672 * 179.72615 * 21 20 19 45 45 H 1.08002 * 119.21726 * 180.26736 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1963 5 6 1.6556 -0.2459 2.4396 6 1 1.5322 0.8118 2.6200 7 6 1.4465 -1.1544 3.4681 8 7 1.5440 -0.7638 4.7212 9 14 1.0269 -2.9315 3.0735 10 1 2.2669 -3.7484 3.0907 11 1 0.0767 -3.4527 4.0886 12 1 0.4037 -3.0058 1.7277 13 6 2.8944 -1.8571 1.0624 14 6 4.3541 -1.3990 1.0433 15 6 5.2692 -2.6170 0.9028 16 7 6.6668 -2.1784 0.8851 17 6 7.6565 -3.0859 0.7688 18 8 7.3892 -4.2689 0.6781 19 6 9.0619 -2.6448 0.7505 20 6 9.3888 -1.2976 0.8524 21 6 10.7327 -0.9164 0.8266 22 6 11.7175 -1.8367 0.7140 23 7 11.4434 -3.1620 0.6126 24 7 12.2318 -4.3142 0.4832 25 7 11.4241 -5.3188 0.4298 26 7 10.2020 -4.9268 0.5111 27 6 10.1512 -3.6122 0.6252 28 1 -0.3633 0.5944 0.8383 29 1 -0.3633 0.4289 -0.9339 30 1 -0.3634 -1.0231 0.0955 31 1 1.8933 -0.5139 -0.8899 32 1 3.1267 1.4436 0.0862 33 1 1.7489 1.9308 -0.9299 34 1 1.6081 1.9806 0.8437 35 1 1.3982 -1.3988 5.4398 36 1 2.6653 -2.3789 0.1332 37 1 2.7356 -2.5295 1.9053 38 1 4.5833 -0.8771 1.9725 39 1 4.5129 -0.7264 0.2002 40 1 5.0398 -3.1384 -0.0265 41 1 5.1105 -3.2899 1.7456 42 1 6.8801 -1.2350 0.9579 43 1 8.6121 -0.5531 0.9462 44 1 10.9895 0.1300 0.9011 45 1 12.7464 -1.5088 0.7015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493860425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:01 Heat of formation + Delta-G solvation = 141.718673 kcal Electronic energy + Delta-G solvation = -27820.384879 eV Core-core repulsion = 23877.399419 eV Total energy + Delta-G solvation = -3942.985460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.70526 -40.04638 -38.72052 -37.17478 -35.27841 -34.40852 -32.67607 -32.40524 -31.94595 -30.94539 -29.26658 -26.38090 -26.21764 -25.13501 -24.71866 -23.78685 -23.03555 -21.42089 -21.01758 -19.47274 -19.11273 -18.00613 -17.82033 -17.23692 -16.58791 -16.23465 -15.77016 -15.61956 -15.13200 -14.89235 -14.31580 -14.13468 -14.02341 -13.50902 -13.37261 -13.32784 -13.09239 -12.83757 -12.77268 -12.41881 -12.25671 -11.97399 -11.87071 -11.76265 -11.44567 -11.29065 -11.23219 -10.86469 -10.77461 -10.69728 -10.48417 -10.47343 -10.14004 -9.97037 -9.72378 -9.41820 -9.22013 -8.99276 -8.51562 -6.90661 -6.02017 -3.41055 -0.49908 0.04643 1.20540 1.77682 2.13140 2.79200 3.07519 3.12983 3.30321 3.47958 3.50793 3.53438 3.83602 3.99770 4.32290 4.49949 4.57580 4.78345 4.82469 4.96740 5.03844 5.12678 5.28568 5.34204 5.40844 5.49740 5.73057 5.75463 5.82442 5.95412 5.98695 6.10564 6.13424 6.25649 6.27399 6.42206 6.49817 6.58790 6.65348 6.69004 6.82818 7.03747 7.10752 7.32575 8.01190 8.03090 8.03647 8.35541 8.96544 9.70018 10.08998 11.13612 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.002515 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.355187 B =11129.975148 C =11717.477148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 C -0.152 4.152 4 N -0.601 5.601 5 C -0.260 4.260 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.285 1.285 11 H -0.304 1.304 12 H -0.269 1.269 13 C 0.141 3.859 14 C -0.146 4.146 15 C 0.118 3.882 16 N -0.715 5.715 17 C 0.554 3.446 18 O -0.501 6.501 19 C -0.094 4.094 20 C -0.020 4.020 21 C -0.142 4.142 22 C 0.126 3.874 23 N -0.309 5.309 24 N -0.108 5.108 25 N -0.009 5.009 26 N -0.289 5.289 27 C 0.272 3.728 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.398 0.602 43 H 0.166 0.834 44 H 0.176 0.824 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.945 5.622 -10.019 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.211 4.211 4 N -0.323 5.323 5 C -0.388 4.388 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.542 5.542 9 Si 0.704 3.296 10 H -0.213 1.213 11 H -0.232 1.232 12 H -0.194 1.194 13 C 0.015 3.985 14 C -0.186 4.186 15 C -0.005 4.005 16 N -0.368 5.368 17 C 0.338 3.662 18 O -0.376 6.376 19 C -0.103 4.103 20 C -0.046 4.046 21 C -0.166 4.166 22 C -0.001 4.001 23 N -0.090 5.090 24 N -0.091 5.091 25 N -0.002 5.002 26 N -0.145 5.145 27 C 0.013 3.987 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.233 0.767 43 H 0.183 0.817 44 H 0.194 0.806 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 18.431 3.197 -10.068 21.244 hybrid contribution -0.233 0.408 0.179 0.502 sum 18.198 3.605 -9.889 21.023 Atomic orbital electron populations 1.22121 0.97649 1.01411 0.99961 1.20397 0.92530 0.92219 0.88896 1.22154 1.00593 0.98359 1.00033 1.44246 1.52353 1.33117 1.02597 1.18668 1.42688 0.93123 0.84369 0.90167 1.25403 0.98430 0.97671 0.95065 1.69866 1.50351 1.35448 0.98569 0.87019 0.77912 0.86722 0.77932 1.21318 1.23186 1.19440 1.21074 0.87883 0.90331 0.99235 1.22447 0.97172 0.96156 1.02860 1.21587 0.77957 0.98547 1.02424 1.45948 1.06853 1.09745 1.74234 1.17440 0.83568 0.86476 0.78695 1.90934 1.83433 1.15939 1.47248 1.20409 0.92138 0.90517 1.07226 1.22074 0.97812 0.94253 0.90449 1.21041 0.91255 1.01086 1.03174 1.21806 1.03097 0.78236 0.96930 1.49025 1.07108 1.08516 1.44336 1.82815 1.13713 0.84909 1.27630 1.78070 0.95580 1.19994 1.06514 1.75326 1.10678 1.05762 1.22757 1.23628 0.85288 0.91782 0.97955 0.92085 0.94493 0.93455 0.93258 0.93495 0.94403 0.92482 0.92773 0.94032 0.92716 0.90400 0.92069 0.91364 0.91104 0.76657 0.81694 0.80633 0.79825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.04 37.15 0.34 -2.38 16 2 C 0.17 2.98 3.36 -67.93 -0.23 2.75 16 3 C -0.15 -2.46 9.11 37.15 0.34 -2.13 16 4 N -0.60 -12.77 2.06 -165.67 -0.34 -13.11 16 5 C -0.26 -6.62 8.74 -15.06 -0.13 -6.75 16 6 H 0.08 2.22 7.17 -52.49 -0.38 1.85 16 7 C 0.03 0.94 5.31 -17.43 -0.09 0.85 16 8 N -0.90 -26.28 13.97 55.49 0.78 -25.51 16 9 Si 0.87 21.52 24.97 -169.99 -4.24 17.28 16 10 H -0.28 -6.87 6.66 56.52 0.38 -6.49 16 11 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.14 2.74 4.49 -4.04 -0.02 2.72 16 14 C -0.15 -2.26 5.65 -26.73 -0.15 -2.41 16 15 C 0.12 1.69 5.67 -4.05 -0.02 1.67 16 16 N -0.72 -8.18 5.51 -61.42 -0.34 -8.51 16 17 C 0.55 7.46 7.77 -12.57 -0.10 7.37 16 18 O -0.50 -9.16 16.28 5.26 0.09 -9.07 16 19 C -0.09 -0.97 6.06 -102.72 -0.62 -1.59 16 20 C -0.02 -0.10 9.63 -38.75 -0.37 -0.47 16 21 C -0.14 -0.37 9.92 -40.09 -0.40 -0.77 16 22 C 0.13 0.59 11.15 -16.90 -0.19 0.41 16 23 N -0.31 -3.17 3.94 -10.99 -0.04 -3.21 16 24 N -0.11 -1.39 13.99 60.35 0.84 -0.55 16 25 N -0.01 -0.13 13.36 60.35 0.81 0.67 16 26 N -0.29 -4.72 11.75 32.20 0.38 -4.34 16 27 C 0.27 3.53 7.85 -154.52 -1.21 2.32 16 28 H 0.06 1.18 7.80 -51.93 -0.40 0.77 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.80 7.78 -51.93 -0.40 0.40 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.02 7.25 -51.93 -0.38 0.65 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.04 0.73 7.90 -51.93 -0.41 0.32 16 37 H 0.06 1.21 2.97 -51.93 -0.15 1.05 16 38 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.40 3.09 6.58 -40.82 -0.27 2.82 16 43 H 0.17 0.29 6.49 -52.49 -0.34 -0.05 16 44 H 0.18 -0.27 8.06 -52.48 -0.42 -0.70 16 45 H 0.18 0.18 8.06 -52.49 -0.42 -0.25 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -36.15 373.97 -5.43 -41.58 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.12 Total: -2.43 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.86 Total: 1.57 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 2.08 Total: -54.56 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.24 Total: 17.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.15 -5.43 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493860425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.300 kcal (2) G-P(sol) polarization free energy of solvation -36.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds