Wall clock time and date at job start Tue Mar 31 2020 18:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47641 * 2 1 4 4 N 1.46512 * 109.46844 * 120.00069 * 2 1 3 5 5 C 1.36939 * 119.99565 * 301.89606 * 4 2 1 6 6 H 1.08001 * 120.00084 * 324.86497 * 5 4 2 7 7 C 1.38815 * 119.99702 * 144.85720 * 5 4 2 8 8 N 1.31624 * 119.99596 * 157.16422 * 7 5 4 9 9 Si 1.86804 * 120.00031 * 337.17091 * 7 5 4 10 10 H 1.48498 * 109.47158 * 95.35292 * 9 7 5 11 11 H 1.48494 * 109.46800 * 215.34971 * 9 7 5 12 12 H 1.48498 * 109.46756 * 335.34939 * 9 7 5 13 13 C 1.46491 * 120.00357 * 121.89690 * 4 2 1 14 14 C 1.53003 * 109.47280 * 89.99596 * 13 4 2 15 15 C 1.52992 * 109.47498 * 180.02562 * 14 13 4 16 16 N 1.46498 * 109.47354 * 180.02562 * 15 14 13 17 17 C 1.34776 * 120.00002 * 179.97438 * 16 15 14 18 18 O 1.21619 * 120.00170 * 0.02562 * 17 16 15 19 19 C 1.47317 * 119.99938 * 179.97438 * 17 16 15 20 20 C 1.39002 * 120.90520 * 0.02562 * 19 17 16 21 21 C 1.39718 * 119.29058 * 180.22692 * 20 19 17 22 22 C 1.35251 * 121.08127 * 359.51517 * 21 20 19 23 23 N 1.35721 * 121.57477 * 0.46272 * 22 21 20 24 24 N 1.40204 * 134.09051 * 179.75436 * 23 22 21 25 25 N 1.29019 * 106.95786 * 180.02562 * 24 23 22 26 26 N 1.28594 * 110.78820 * 0.02562 * 25 24 23 27 27 C 1.32046 * 110.21338 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47085 * 305.33581 * 1 2 3 29 29 H 1.09006 * 109.47088 * 65.33146 * 1 2 3 30 30 H 1.08997 * 109.47786 * 185.33195 * 1 2 3 31 31 H 1.08995 * 109.47244 * 239.99199 * 2 1 3 32 32 H 1.09003 * 109.47479 * 175.18697 * 3 2 1 33 33 H 1.09000 * 109.47247 * 295.18897 * 3 2 1 34 34 H 1.09004 * 109.47501 * 55.18489 * 3 2 1 35 35 H 0.97001 * 119.99254 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.47255 * 330.00403 * 13 4 2 37 37 H 1.08992 * 109.47608 * 210.00220 * 13 4 2 38 38 H 1.09009 * 109.46775 * 59.99975 * 14 13 4 39 39 H 1.09006 * 109.47304 * 300.00725 * 14 13 4 40 40 H 1.09003 * 109.46826 * 60.00077 * 15 14 13 41 41 H 1.09006 * 109.47325 * 300.00577 * 15 14 13 42 42 H 0.97000 * 120.00167 * 0.02562 * 16 15 14 43 43 H 1.07994 * 120.35593 * 359.95918 * 20 19 17 44 44 H 1.08004 * 119.45672 * 179.72615 * 21 20 19 45 45 H 1.08002 * 119.21726 * 180.26736 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1963 5 6 1.6556 -0.2459 2.4396 6 1 1.5322 0.8118 2.6200 7 6 1.4465 -1.1544 3.4681 8 7 1.5440 -0.7638 4.7212 9 14 1.0269 -2.9315 3.0735 10 1 2.2669 -3.7484 3.0907 11 1 0.0767 -3.4527 4.0886 12 1 0.4037 -3.0058 1.7277 13 6 2.8944 -1.8571 1.0624 14 6 4.3541 -1.3990 1.0433 15 6 5.2692 -2.6170 0.9028 16 7 6.6668 -2.1784 0.8851 17 6 7.6565 -3.0859 0.7688 18 8 7.3892 -4.2689 0.6781 19 6 9.0619 -2.6448 0.7505 20 6 9.3888 -1.2976 0.8524 21 6 10.7327 -0.9164 0.8266 22 6 11.7175 -1.8367 0.7140 23 7 11.4434 -3.1620 0.6126 24 7 12.2318 -4.3142 0.4832 25 7 11.4241 -5.3188 0.4298 26 7 10.2020 -4.9268 0.5111 27 6 10.1512 -3.6122 0.6252 28 1 -0.3633 0.5944 0.8383 29 1 -0.3633 0.4289 -0.9339 30 1 -0.3634 -1.0231 0.0955 31 1 1.8933 -0.5139 -0.8899 32 1 3.1267 1.4436 0.0862 33 1 1.7489 1.9308 -0.9299 34 1 1.6081 1.9806 0.8437 35 1 1.3982 -1.3988 5.4398 36 1 2.6653 -2.3789 0.1332 37 1 2.7356 -2.5295 1.9053 38 1 4.5833 -0.8771 1.9725 39 1 4.5129 -0.7264 0.2002 40 1 5.0398 -3.1384 -0.0265 41 1 5.1105 -3.2899 1.7456 42 1 6.8801 -1.2350 0.9579 43 1 8.6121 -0.5531 0.9462 44 1 10.9895 0.1300 0.9011 45 1 12.7464 -1.5088 0.7015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493860425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:00 Heat of formation + Delta-G solvation = 114.177202 kcal Electronic energy + Delta-G solvation = -27821.579167 eV Core-core repulsion = 23877.399419 eV Total energy + Delta-G solvation = -3944.179747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.52014 -40.99695 -39.45126 -38.73722 -36.47505 -35.18620 -34.27341 -33.55304 -33.10013 -31.86510 -30.67718 -27.73301 -27.38187 -26.29044 -25.40046 -25.14320 -24.17359 -22.70491 -21.94023 -21.12060 -19.91739 -18.69297 -18.65086 -18.28127 -18.07144 -17.29183 -16.89345 -16.57658 -16.55574 -16.32910 -15.45016 -15.30959 -14.90305 -14.80265 -14.74619 -14.21790 -14.04263 -14.00277 -13.93653 -13.69811 -13.49971 -13.34505 -13.24255 -12.86209 -12.68212 -12.57508 -12.51636 -12.29415 -12.20210 -12.12995 -11.96530 -11.64764 -11.36942 -11.32896 -11.21860 -11.13367 -10.51766 -10.24419 -9.73843 -8.70549 -8.12201 -5.44069 -1.09141 -0.61539 0.55741 0.92979 1.32280 1.43289 1.44349 1.51454 1.89209 2.25119 2.46262 2.46489 2.81352 3.12185 3.35830 3.38850 3.57163 3.70701 3.98671 4.11244 4.15498 4.20582 4.34350 4.36247 4.42557 4.55578 4.56200 4.63978 4.73429 4.76452 4.80386 4.88516 4.96589 5.00786 5.14228 5.20388 5.25229 5.28967 5.33399 5.35043 5.48830 5.62519 5.70428 6.04528 6.30226 6.44006 7.09293 7.11322 7.14117 7.76485 8.16119 9.07815 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.002515 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.355187 B =11129.975148 C =11717.477148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 C -0.143 4.143 4 N -0.611 5.611 5 C -0.223 4.223 6 H 0.053 0.947 7 C -0.020 4.020 8 N -0.950 5.950 9 Si 0.924 3.076 10 H -0.283 1.283 11 H -0.321 1.321 12 H -0.260 1.260 13 C 0.130 3.870 14 C -0.124 4.124 15 C 0.127 3.873 16 N -0.699 5.699 17 C 0.555 3.445 18 O -0.564 6.564 19 C -0.138 4.138 20 C 0.025 3.975 21 C -0.113 4.113 22 C 0.121 3.879 23 N -0.305 5.305 24 N -0.121 5.121 25 N -0.039 5.039 26 N -0.348 5.348 27 C 0.253 3.747 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.257 0.743 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.419 0.581 43 H 0.207 0.793 44 H 0.239 0.761 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.784 9.481 -12.461 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.051 3.949 3 C -0.202 4.202 4 N -0.334 5.334 5 C -0.353 4.353 6 H 0.070 0.930 7 C -0.215 4.215 8 N -0.595 5.595 9 Si 0.756 3.244 10 H -0.211 1.211 11 H -0.251 1.251 12 H -0.184 1.184 13 C 0.005 3.995 14 C -0.165 4.165 15 C 0.003 3.997 16 N -0.352 5.352 17 C 0.341 3.659 18 O -0.443 6.443 19 C -0.147 4.147 20 C 0.000 4.000 21 C -0.135 4.135 22 C -0.005 4.005 23 N -0.086 5.086 24 N -0.104 5.104 25 N -0.032 5.032 26 N -0.206 5.206 27 C -0.004 4.004 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.258 0.742 43 H 0.224 0.776 44 H 0.255 0.745 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 20.294 7.109 -12.565 24.905 hybrid contribution -0.739 -0.450 0.855 1.216 sum 19.556 6.659 -11.710 23.746 Atomic orbital electron populations 1.22094 0.97739 1.00181 1.00829 1.20708 0.92574 0.93281 0.88321 1.22039 1.00785 0.96797 1.00587 1.44417 1.53223 1.33555 1.02223 1.18533 1.39245 0.91700 0.85857 0.92967 1.25849 1.00130 1.00499 0.95043 1.69970 1.53854 1.36310 0.99413 0.86177 0.77237 0.83632 0.77331 1.21122 1.25115 1.18448 1.21172 0.89928 0.89387 0.99054 1.22128 0.94646 0.96496 1.03186 1.21274 0.79488 0.97572 1.01388 1.45634 1.05365 1.10655 1.73575 1.17904 0.85087 0.85726 0.77152 1.90902 1.84552 1.18591 1.50260 1.20141 0.89548 0.92207 1.12831 1.22752 1.00345 0.92172 0.84748 1.21848 0.89156 1.03243 0.99294 1.23021 1.06261 0.76018 0.95212 1.49145 1.05740 1.09714 1.43964 1.82596 1.14023 0.85619 1.28162 1.77981 0.95813 1.21380 1.08061 1.75142 1.11459 1.08614 1.25429 1.23824 0.86941 0.91287 0.98383 0.94638 0.90878 0.95054 0.90238 0.92763 0.91135 0.95205 0.93386 0.91727 0.95743 0.92178 0.88990 0.91093 0.94081 0.74209 0.77638 0.74464 0.75595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.04 71.98 0.65 -4.33 16 2 C 0.16 5.10 3.36 44.99 0.15 5.25 16 3 C -0.14 -4.13 9.11 71.98 0.66 -3.47 16 4 N -0.61 -24.92 2.06 -678.05 -1.40 -26.32 16 5 C -0.22 -11.40 8.74 84.03 0.73 -10.67 16 6 H 0.05 2.96 7.17 -2.91 -0.02 2.94 16 7 C -0.02 -1.10 5.31 84.86 0.45 -0.64 16 8 N -0.95 -57.33 13.97 21.65 0.30 -57.03 16 9 Si 0.92 45.72 24.97 68.60 1.71 47.44 16 10 H -0.28 -13.72 6.66 99.48 0.66 -13.05 16 11 H -0.32 -16.65 7.11 99.48 0.71 -15.94 16 12 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 13 C 0.13 4.80 4.49 86.38 0.39 5.19 16 14 C -0.12 -3.55 5.65 30.59 0.17 -3.38 16 15 C 0.13 3.50 5.67 86.38 0.49 3.99 16 16 N -0.70 -14.55 5.51 -466.48 -2.57 -17.12 16 17 C 0.55 14.77 7.77 86.63 0.67 15.45 16 18 O -0.56 -21.79 16.28 -4.09 -0.07 -21.86 16 19 C -0.14 -2.60 6.06 -18.63 -0.11 -2.71 16 20 C 0.02 0.11 9.63 22.81 0.22 0.33 16 21 C -0.11 0.21 9.92 21.94 0.22 0.43 16 22 C 0.12 0.54 11.15 83.40 0.93 1.47 16 23 N -0.31 -5.82 3.94 -188.68 -0.74 -6.56 16 24 N -0.12 -3.18 13.99 37.02 0.52 -2.66 16 25 N -0.04 -1.31 13.36 37.02 0.49 -0.82 16 26 N -0.35 -12.27 11.75 -52.05 -0.61 -12.88 16 27 C 0.25 6.60 7.85 135.75 1.07 7.67 16 28 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 2.18 7.78 -2.39 -0.02 2.16 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.01 7.25 -2.39 -0.02 0.99 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.06 2.09 7.90 -2.38 -0.02 2.07 16 37 H 0.02 1.07 2.97 -2.39 -0.01 1.06 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.42 4.77 6.58 -92.71 -0.61 4.16 16 43 H 0.21 -0.81 6.49 -2.91 -0.02 -0.83 16 44 H 0.24 -3.17 8.06 -2.91 -0.02 -3.19 16 45 H 0.23 -0.97 8.06 -2.91 -0.02 -1.00 16 Total: -1.00 -91.23 373.97 4.70 -86.53 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: 0.37 Total: -3.29 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 6.69 Total: 14.57 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -4.01 Total: -123.39 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.07 Total: -21.86 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.71 Total: 47.44 kcal Total: -91.23 4.70 -86.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493860425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.708 kcal (2) G-P(sol) polarization free energy of solvation -91.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds