Wall clock time and date at job start Tue Mar 31 2020 18:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 H 1.09004 * 109.46918 * 184.99986 * 13 2 1 15 15 C 1.53001 * 109.46887 * 64.99956 * 13 2 1 16 16 N 1.46499 * 109.47047 * 305.00007 * 13 2 1 17 17 C 1.34781 * 119.99668 * 204.99720 * 16 13 2 18 18 O 1.21624 * 120.00119 * 0.02562 * 17 16 13 19 19 C 1.47242 * 119.99950 * 179.97438 * 17 16 13 20 20 C 1.38037 * 126.81136 * 359.69411 * 19 17 16 21 21 N 1.34102 * 107.87532 * 179.82923 * 20 19 17 22 22 H 0.96999 * 125.15963 * 180.16563 * 21 20 19 23 23 N 1.39777 * 109.68261 * 0.44158 * 21 20 19 24 24 C 1.31340 * 109.09166 * 359.72229 * 23 21 20 25 25 C 1.48378 * 126.51071 * 179.97438 * 24 23 21 26 26 C 1.40887 * 126.22657 * 144.73077 * 25 24 23 27 27 N 1.30663 * 108.09155 * 179.85193 * 26 25 24 28 28 N 1.40010 * 108.53929 * 0.41088 * 27 26 25 29 29 C 1.46499 * 125.88945 * 179.73140 * 28 27 26 30 30 C 1.34821 * 108.22165 * 359.73553 * 28 27 26 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 33 33 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 34 34 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 35 35 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46997 * 60.00245 * 15 13 2 37 37 H 1.09000 * 109.46522 * 179.97438 * 15 13 2 38 38 H 1.08994 * 109.47269 * 299.99642 * 15 13 2 39 39 H 0.96996 * 119.99988 * 25.00363 * 16 13 2 40 40 H 1.07996 * 126.06361 * 359.97438 * 20 19 17 41 41 H 1.08004 * 125.95401 * 0.02694 * 26 25 24 42 42 H 1.09000 * 109.47376 * 270.00152 * 29 28 27 43 43 H 1.08999 * 109.46820 * 30.00121 * 29 28 27 44 44 H 1.09003 * 109.46681 * 149.99942 * 29 28 27 45 45 H 1.08000 * 126.19995 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 3.7294 1.3878 -4.9468 11 1 3.2759 -0.6541 -6.1744 12 1 1.4488 0.8028 -5.5277 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0913 -0.1939 3.6276 18 8 3.1498 -0.7876 3.7064 19 6 1.5045 0.4273 4.8267 20 6 0.3219 1.1358 4.8965 21 7 0.1504 1.5261 6.1680 22 1 -0.6033 2.0400 6.4977 23 7 1.2256 1.0855 6.9448 24 6 2.0632 0.4213 6.1817 25 6 3.3340 -0.2138 6.6099 26 6 3.8729 -1.4165 6.1120 27 7 5.0003 -1.6434 6.7322 28 7 5.2198 -0.6088 7.6497 29 6 6.3694 -0.4887 8.5497 30 6 4.1907 0.2577 7.5620 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6318 -1.1527 35 1 3.2335 -2.3998 -4.2459 36 1 2.0699 -2.6550 0.3002 37 1 1.9989 -2.7094 2.0777 38 1 0.5489 -2.2724 1.1421 39 1 0.6118 0.3700 2.3794 40 1 -0.3478 1.3378 4.0737 41 1 3.4324 -2.0405 5.3484 42 1 6.1469 -0.9890 9.4922 43 1 7.2415 -0.9527 8.0891 44 1 6.5752 0.5652 8.7375 45 1 4.0668 1.1615 8.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505727708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:56 Heat of formation + Delta-G solvation = 133.589031 kcal Electronic energy + Delta-G solvation = -28032.543427 eV Core-core repulsion = 24089.205440 eV Total energy + Delta-G solvation = -3943.337987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46591 -40.78250 -39.16737 -36.72511 -33.94743 -33.55917 -32.23782 -31.93593 -30.51485 -29.58893 -28.86794 -28.17225 -26.90944 -24.44805 -23.77849 -22.72997 -22.40479 -21.13195 -19.93175 -19.51567 -19.27559 -18.38014 -17.35090 -16.87506 -16.42290 -15.58407 -15.30000 -15.14613 -14.75196 -14.66807 -14.37072 -14.24216 -14.01240 -13.70915 -13.48126 -13.11525 -12.95842 -12.82871 -12.69485 -12.49095 -12.33960 -11.90118 -11.57593 -11.29046 -11.11383 -10.90187 -10.82650 -10.80279 -10.41912 -10.24673 -10.17636 -9.94304 -9.75103 -9.58202 -9.34711 -9.00514 -8.91244 -8.64732 -8.20639 -6.97684 -5.75966 -3.05291 1.38433 1.48111 2.12082 2.35149 2.55974 3.08114 3.44108 3.47286 3.50190 3.52452 3.64630 4.22101 4.44871 4.50604 4.60787 4.70721 4.90693 5.00974 5.16148 5.22525 5.25954 5.39944 5.46195 5.54177 5.60092 5.66544 5.71080 5.90309 5.91751 6.12237 6.21290 6.23728 6.35053 6.44205 6.56649 6.66493 6.70853 6.76043 6.83696 6.89383 7.02947 7.11552 7.33987 7.69683 7.69956 7.86385 8.42587 8.59139 9.53822 10.09989 10.44646 11.46576 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.002583 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.239394 B =10839.120481 C =11970.803381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.050 0.950 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.287 1.287 13 C 0.139 3.861 14 H 0.089 0.911 15 C -0.159 4.159 16 N -0.718 5.718 17 C 0.589 3.411 18 O -0.536 6.536 19 C -0.277 4.277 20 C 0.105 3.895 21 N -0.468 5.468 22 H 0.442 0.558 23 N -0.299 5.299 24 C 0.220 3.780 25 C -0.176 4.176 26 C 0.119 3.881 27 N -0.305 5.305 28 N -0.379 5.379 29 C 0.103 3.897 30 C 0.088 3.912 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.392 0.608 40 H 0.186 0.814 41 H 0.197 0.803 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 6.948 25.391 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.034 3.966 14 H 0.107 0.893 15 C -0.217 4.217 16 N -0.370 5.370 17 C 0.377 3.623 18 O -0.414 6.414 19 C -0.293 4.293 20 C -0.046 4.046 21 N -0.173 5.173 22 H 0.286 0.714 23 N -0.121 5.121 24 C 0.050 3.950 25 C -0.191 4.191 26 C -0.069 4.069 27 N -0.125 5.125 28 N -0.159 5.159 29 C -0.038 4.038 30 C -0.062 4.062 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.227 0.773 40 H 0.203 0.797 41 H 0.213 0.787 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.641 6.254 26.663 27.513 hybrid contribution -1.410 1.180 -1.798 2.572 sum -4.051 7.435 24.865 26.267 Atomic orbital electron populations 1.22535 0.99501 1.01234 0.99525 1.20359 0.92031 0.95599 0.86308 0.93157 1.42447 1.78207 1.10880 1.04738 1.19169 1.37053 0.93872 0.87058 0.91242 1.24738 1.02043 0.95981 0.98051 1.69649 1.50718 1.08590 1.28993 0.86270 0.77716 0.78610 0.83571 1.21280 1.21712 1.21337 1.21286 0.99119 0.92718 0.83439 0.89287 1.22138 1.01335 0.95928 1.02289 1.46078 1.25557 1.57112 1.08273 1.17134 0.84056 0.79331 0.81824 1.90746 1.22081 1.43455 1.85129 1.21404 0.99125 1.13796 0.94933 1.23030 0.97354 0.95362 0.88823 1.45862 1.20490 1.44928 1.05978 0.71415 1.77318 0.97490 1.19922 1.17337 1.20865 0.91917 0.93099 0.89087 1.17613 0.96143 1.00065 1.05238 1.24245 0.91087 0.95241 0.96337 1.77392 1.19061 1.09933 1.06084 1.48396 1.18272 1.18242 1.31005 1.21845 0.86596 1.03296 0.92104 1.22459 0.88854 0.96324 0.98557 0.95052 0.92499 0.92779 0.77738 0.93396 0.90663 0.92947 0.92700 0.77267 0.79678 0.78656 0.90768 0.89134 0.89604 0.80704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.01 37.16 0.33 -2.35 16 2 C 0.17 3.15 2.93 -67.93 -0.20 2.96 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.72 -17.43 5.03 -53.43 -0.27 -17.70 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 9 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.14 2.35 2.62 -67.93 -0.18 2.17 16 14 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 15 C -0.16 -2.64 9.00 37.16 0.33 -2.31 16 16 N -0.72 -9.64 4.98 -54.94 -0.27 -9.91 16 17 C 0.59 8.65 7.77 -12.60 -0.10 8.55 16 18 O -0.54 -9.60 12.60 5.26 0.07 -9.53 16 19 C -0.28 -3.39 6.31 -102.95 -0.65 -4.04 16 20 C 0.10 0.84 11.50 -16.63 -0.19 0.65 16 21 N -0.47 -3.60 7.20 30.82 0.22 -3.37 16 22 H 0.44 1.70 8.96 -182.84 -1.64 0.06 16 23 N -0.30 -3.40 12.65 34.59 0.44 -2.96 16 24 C 0.22 2.85 7.27 -80.54 -0.59 2.27 16 25 C -0.18 -2.40 5.82 -105.36 -0.61 -3.01 16 26 C 0.12 1.78 10.13 -17.05 -0.17 1.61 16 27 N -0.30 -4.52 12.54 30.81 0.39 -4.13 16 28 N -0.38 -4.33 4.00 -67.88 -0.27 -4.60 16 29 C 0.10 0.66 11.46 59.85 0.69 1.34 16 30 C 0.09 0.98 11.45 -16.87 -0.19 0.78 16 31 H 0.03 0.37 6.29 -51.93 -0.33 0.04 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.88 6.56 -51.93 -0.34 0.54 16 34 H 0.39 9.95 5.77 -40.82 -0.24 9.71 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.41 6.29 -51.93 -0.33 1.09 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.84 6.56 -51.93 -0.34 0.50 16 39 H 0.39 4.11 5.53 -40.82 -0.23 3.88 16 40 H 0.19 0.74 7.48 -52.49 -0.39 0.34 16 41 H 0.20 3.03 6.38 -52.48 -0.33 2.70 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -36.35 374.03 -7.19 -43.55 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.06 Total: 11.47 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.77 Total: 1.52 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: 0.96 Total: -69.82 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.35 -7.19 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505727708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.136 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds