Wall clock time and date at job start Tue Mar 31 2020 18:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 C 1.52998 * 109.47705 * 174.99884 * 5 4 3 8 8 N 1.46490 * 109.47689 * 175.00086 * 7 5 4 9 9 C 1.36937 * 120.00680 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99476 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00501 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99700 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99808 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47241 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46905 * 120.00273 * 13 11 9 16 16 H 1.48504 * 109.46979 * 239.99958 * 13 11 9 17 17 N 1.46497 * 109.47408 * 295.00294 * 5 4 3 18 18 C 1.34775 * 120.00077 * 84.99397 * 17 5 4 19 19 O 1.21575 * 120.00186 * 0.02562 * 18 17 5 20 20 C 1.47700 * 119.99824 * 180.02562 * 18 17 5 21 21 C 1.41597 * 120.03410 * 359.97438 * 20 18 17 22 22 C 1.35780 * 119.54823 * 179.97438 * 21 20 18 23 23 C 1.40859 * 119.39307 * 0.02562 * 22 21 20 24 24 N 1.32486 * 133.42002 * 179.97438 * 23 22 21 25 25 N 1.28535 * 110.24250 * 179.97438 * 24 23 22 26 26 N 1.28979 * 110.84565 * 0.02562 * 25 24 23 27 27 N 1.36933 * 119.92712 * 359.97438 * 23 22 21 28 28 C 1.35492 * 120.84659 * 359.74718 * 27 23 22 29 29 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 31 31 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 37 37 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 38 38 H 1.09003 * 109.47087 * 295.00778 * 7 5 4 39 39 H 1.09009 * 109.46938 * 55.00167 * 7 5 4 40 40 H 0.97004 * 120.00027 * 0.02562 * 8 7 5 41 41 H 0.97005 * 119.99312 * 180.02562 * 12 11 9 42 42 H 0.97001 * 120.00250 * 264.99821 * 17 5 4 43 43 H 1.07999 * 120.22503 * 359.96213 * 21 20 18 44 44 H 1.07998 * 120.30074 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.82551 * 180.25596 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 6 5.6048 2.8868 0.1251 8 7 6.1030 4.2593 0.0060 9 6 7.4469 4.5094 0.0867 10 1 8.1396 3.6947 0.2378 11 6 7.9190 5.8099 -0.0267 12 7 7.0747 6.8026 -0.2114 13 14 9.7522 6.1510 0.0842 14 1 10.4815 4.8744 0.2930 15 1 10.2150 6.7844 -1.1768 16 1 10.0175 7.0654 1.2238 17 7 3.6919 3.5408 -1.2512 18 6 2.4745 4.1077 -1.3655 19 8 1.6986 4.0753 -0.4301 20 6 2.0831 4.7684 -2.6271 21 6 2.9864 4.8070 -3.7168 22 6 2.6161 5.4165 -4.8723 23 6 1.3381 6.0012 -4.9667 24 7 0.7026 6.6503 -5.9311 25 7 -0.4700 6.9977 -5.5356 26 7 -0.6778 6.6129 -4.3223 27 7 0.4829 5.9503 -3.8985 28 6 0.8468 5.3381 -2.7458 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9337 0.9286 0.8891 37 1 3.9330 0.9289 -0.8908 38 1 5.8903 2.4795 1.0950 39 1 6.0351 2.2741 -0.6672 40 1 5.4808 4.9910 -0.1301 41 1 7.4047 7.7113 -0.2910 42 1 4.3110 3.5669 -1.9974 43 1 3.9633 4.3550 -3.6294 44 1 3.2953 5.4527 -5.7111 45 1 0.1577 5.3040 -1.9149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506541049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:22 Heat of formation + Delta-G solvation = 111.290286 kcal Electronic energy + Delta-G solvation = -28367.012353 eV Core-core repulsion = 24422.707420 eV Total energy + Delta-G solvation = -3944.304933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.65784 -40.49732 -38.59687 -36.71264 -35.08216 -34.51226 -33.70687 -32.61146 -31.28216 -30.80859 -30.39739 -27.47352 -25.72836 -24.67172 -24.27198 -23.10246 -22.41854 -21.73196 -20.87436 -20.54441 -19.12937 -17.78214 -17.74997 -17.14422 -17.02295 -16.45041 -15.62444 -15.33074 -15.09805 -14.87542 -14.58494 -14.00081 -13.86952 -13.80629 -13.64796 -13.36612 -13.13364 -12.85810 -12.83620 -12.72605 -12.23939 -12.11635 -12.06657 -11.92088 -11.45911 -11.32743 -11.19598 -11.05142 -10.97755 -10.92719 -10.51805 -10.47258 -10.36356 -10.13905 -10.08390 -9.86531 -9.06282 -9.00333 -8.87245 -7.10236 -5.90870 -3.21332 -0.15210 0.16284 1.32941 1.71214 2.43008 3.00196 3.19122 3.34169 3.35855 3.40603 3.42782 3.81222 4.09248 4.28239 4.44199 4.51458 4.65347 4.74283 4.95038 5.00249 5.06813 5.25876 5.26736 5.31962 5.33019 5.38879 5.43188 5.43593 5.64685 5.68972 5.77942 5.79868 5.84972 5.90825 5.96351 6.03175 6.09727 6.15126 6.25342 6.34049 6.47532 6.51900 6.69974 7.45926 7.57465 8.07929 8.08955 8.26741 9.39246 9.92918 10.27912 11.31172 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007580 B = 0.004056 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.803264 B = 6901.296315 C =10052.451851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.128 4.128 5 C 0.138 3.862 6 H 0.092 0.908 7 C 0.143 3.857 8 N -0.732 5.732 9 C -0.245 4.245 10 H 0.072 0.928 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.695 5.695 18 C 0.570 3.430 19 O -0.528 6.528 20 C -0.142 4.142 21 C -0.027 4.027 22 C -0.094 4.094 23 C 0.253 3.747 24 N -0.325 5.325 25 N -0.006 5.006 26 N -0.107 5.107 27 N -0.305 5.305 28 C 0.174 3.826 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.405 0.595 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.591 -11.072 -5.426 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.166 4.166 5 C 0.034 3.966 6 H 0.110 0.890 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.376 4.376 10 H 0.090 0.910 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.346 5.346 18 C 0.355 3.645 19 O -0.406 6.406 20 C -0.151 4.151 21 C -0.053 4.053 22 C -0.117 4.117 23 C -0.002 4.002 24 N -0.185 5.185 25 N 0.001 4.999 26 N -0.090 5.090 27 N -0.083 5.083 28 C 0.044 3.956 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.241 0.759 43 H 0.183 0.817 44 H 0.192 0.808 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.237 -10.295 -5.424 16.886 hybrid contribution 1.798 0.202 0.228 1.824 sum -10.439 -10.093 -5.196 15.422 Atomic orbital electron populations 1.21748 0.96230 1.00963 1.01831 1.21569 0.95640 0.97626 1.01472 1.21685 0.94732 0.95537 1.03124 1.21992 0.96096 0.96002 1.02557 1.21430 0.96395 0.92562 0.86195 0.88972 1.20987 0.88857 0.89497 0.99130 1.42354 1.05469 1.01901 1.87998 1.19241 0.83537 0.92521 1.42329 0.91033 1.24741 0.97714 0.95639 1.02461 1.69665 1.32883 0.99059 1.56187 0.86139 0.85000 0.77837 0.77293 1.20511 1.21808 1.21817 1.45826 1.15074 1.55959 1.17697 1.17366 0.82788 0.78583 0.85773 1.90832 1.51414 1.59211 1.39107 1.19831 0.93765 1.04187 0.97332 1.21561 0.99701 0.93813 0.90266 1.20336 0.91598 0.98938 1.00832 1.23127 0.94746 0.97551 0.84743 1.75181 1.01012 1.18821 1.23455 1.77866 1.08615 1.10435 1.03029 1.82861 1.01398 1.16287 1.08481 1.48790 1.12679 1.34834 1.11968 1.21712 0.96812 0.89834 0.87285 0.93264 0.92742 0.93037 0.92565 0.92314 0.91983 0.91353 0.90794 0.91746 0.94600 0.95606 0.78055 0.93451 0.75902 0.81743 0.80848 0.78720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.13 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.11 -1.25 3.81 -26.73 -0.10 -1.35 16 4 C -0.13 -1.38 4.89 -26.74 -0.13 -1.52 16 5 C 0.14 1.86 2.41 -67.94 -0.16 1.70 16 6 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 7 C 0.14 2.37 5.82 -4.05 -0.02 2.34 16 8 N -0.73 -16.11 5.43 -59.91 -0.33 -16.44 16 9 C -0.25 -6.22 9.99 -15.06 -0.15 -6.37 16 10 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 13 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 N -0.69 -8.42 4.42 -54.80 -0.24 -8.66 16 18 C 0.57 7.06 6.33 -12.40 -0.08 6.98 16 19 O -0.53 -7.73 13.42 5.30 0.07 -7.66 16 20 C -0.14 -1.48 5.84 -105.33 -0.62 -2.10 16 21 C -0.03 -0.23 9.53 -39.18 -0.37 -0.61 16 22 C -0.09 -0.84 10.09 -39.47 -0.40 -1.24 16 23 C 0.25 3.11 8.02 -156.27 -1.25 1.86 16 24 N -0.33 -4.69 12.26 31.10 0.38 -4.31 16 25 N -0.01 -0.10 13.35 60.35 0.81 0.71 16 26 N -0.11 -1.54 13.99 60.35 0.84 -0.70 16 27 N -0.30 -3.84 3.92 -12.06 -0.05 -3.88 16 28 C 0.17 1.88 10.77 -16.51 -0.18 1.71 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.74 5.65 -51.93 -0.29 0.44 16 35 H 0.07 0.86 7.84 -51.93 -0.41 0.46 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.39 9.07 7.33 -40.82 -0.30 8.77 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.40 4.40 6.64 -40.82 -0.27 4.13 16 43 H 0.17 1.06 6.44 -52.49 -0.34 0.73 16 44 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.20 1.89 7.57 -52.49 -0.40 1.49 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -31.34 376.12 -6.67 -38.01 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.17 Total: 8.02 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.35 Total: -1.29 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 2.14 Total: -58.78 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.07 Total: -7.66 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.34 -6.67 -38.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506541049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.299 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds