Wall clock time and date at job start Tue Mar 31 2020 18:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 C 1.52998 * 109.47705 * 174.99884 * 5 4 3 8 8 N 1.46490 * 109.47689 * 175.00086 * 7 5 4 9 9 C 1.36937 * 120.00680 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99476 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00501 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99700 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99808 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47241 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46905 * 120.00273 * 13 11 9 16 16 H 1.48504 * 109.46979 * 239.99958 * 13 11 9 17 17 N 1.46497 * 109.47408 * 295.00294 * 5 4 3 18 18 C 1.34775 * 120.00077 * 84.99397 * 17 5 4 19 19 O 1.21575 * 120.00186 * 0.02562 * 18 17 5 20 20 C 1.47700 * 119.99824 * 180.02562 * 18 17 5 21 21 C 1.41597 * 120.03410 * 359.97438 * 20 18 17 22 22 C 1.35780 * 119.54823 * 179.97438 * 21 20 18 23 23 C 1.40859 * 119.39307 * 0.02562 * 22 21 20 24 24 N 1.32486 * 133.42002 * 179.97438 * 23 22 21 25 25 N 1.28535 * 110.24250 * 179.97438 * 24 23 22 26 26 N 1.28979 * 110.84565 * 0.02562 * 25 24 23 27 27 N 1.36933 * 119.92712 * 359.97438 * 23 22 21 28 28 C 1.35492 * 120.84659 * 359.74718 * 27 23 22 29 29 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 31 31 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 37 37 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 38 38 H 1.09003 * 109.47087 * 295.00778 * 7 5 4 39 39 H 1.09009 * 109.46938 * 55.00167 * 7 5 4 40 40 H 0.97004 * 120.00027 * 0.02562 * 8 7 5 41 41 H 0.97005 * 119.99312 * 180.02562 * 12 11 9 42 42 H 0.97001 * 120.00250 * 264.99821 * 17 5 4 43 43 H 1.07999 * 120.22503 * 359.96213 * 21 20 18 44 44 H 1.07998 * 120.30074 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.82551 * 180.25596 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 6 5.6048 2.8868 0.1251 8 7 6.1030 4.2593 0.0060 9 6 7.4469 4.5094 0.0867 10 1 8.1396 3.6947 0.2378 11 6 7.9190 5.8099 -0.0267 12 7 7.0747 6.8026 -0.2114 13 14 9.7522 6.1510 0.0842 14 1 10.4815 4.8744 0.2930 15 1 10.2150 6.7844 -1.1768 16 1 10.0175 7.0654 1.2238 17 7 3.6919 3.5408 -1.2512 18 6 2.4745 4.1077 -1.3655 19 8 1.6986 4.0753 -0.4301 20 6 2.0831 4.7684 -2.6271 21 6 2.9864 4.8070 -3.7168 22 6 2.6161 5.4165 -4.8723 23 6 1.3381 6.0012 -4.9667 24 7 0.7026 6.6503 -5.9311 25 7 -0.4700 6.9977 -5.5356 26 7 -0.6778 6.6129 -4.3223 27 7 0.4829 5.9503 -3.8985 28 6 0.8468 5.3381 -2.7458 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9337 0.9286 0.8891 37 1 3.9330 0.9289 -0.8908 38 1 5.8903 2.4795 1.0950 39 1 6.0351 2.2741 -0.6672 40 1 5.4808 4.9910 -0.1301 41 1 7.4047 7.7113 -0.2910 42 1 4.3110 3.5669 -1.9974 43 1 3.9633 4.3550 -3.6294 44 1 3.2953 5.4527 -5.7111 45 1 0.1577 5.3040 -1.9149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506541049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:20 Heat of formation + Delta-G solvation = 91.201584 kcal Electronic energy + Delta-G solvation = -28367.883464 eV Core-core repulsion = 24422.707420 eV Total energy + Delta-G solvation = -3945.176045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -44.64006 -41.50966 -39.56548 -37.85671 -36.21737 -35.53555 -35.00628 -33.67590 -32.74277 -31.79554 -31.49158 -28.73146 -26.79629 -25.76898 -25.51022 -24.07957 -23.70795 -22.79100 -21.75815 -21.61852 -20.11053 -19.25901 -18.63457 -18.38279 -18.13745 -17.48198 -16.71588 -16.52502 -16.14978 -15.91028 -15.73081 -15.25132 -15.17352 -14.83626 -14.67557 -14.48923 -14.27682 -14.07520 -13.83334 -13.73827 -13.46288 -13.12237 -12.93059 -12.82802 -12.81497 -12.80811 -12.47112 -12.35956 -12.03700 -11.97094 -11.83954 -11.80968 -11.40898 -11.37200 -11.27192 -11.14234 -10.91863 -10.02518 -9.81898 -8.94871 -7.90613 -5.18314 -1.07935 -0.67365 0.39266 0.69287 1.49994 1.51292 1.54014 1.61761 2.01352 2.26374 2.46084 2.59836 2.91008 3.27055 3.41636 3.46053 3.63947 3.66720 3.82021 4.00896 4.08228 4.13916 4.29769 4.36839 4.40206 4.41316 4.58765 4.60904 4.64570 4.67934 4.89069 4.93795 4.98932 5.00513 5.05116 5.06332 5.13510 5.19269 5.28517 5.37379 5.43556 5.57584 5.59611 5.65974 6.30895 6.46775 7.04927 7.10193 7.39843 8.13728 8.36394 9.32039 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007580 B = 0.004056 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3692.803264 B = 6901.296315 C =10052.451851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.118 4.118 5 C 0.149 3.851 6 H 0.066 0.934 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.236 4.236 10 H 0.079 0.921 11 C -0.068 4.068 12 N -0.965 5.965 13 Si 0.963 3.037 14 H -0.265 1.265 15 H -0.295 1.295 16 H -0.303 1.303 17 N -0.690 5.690 18 C 0.572 3.428 19 O -0.553 6.553 20 C -0.135 4.135 21 C -0.016 4.016 22 C -0.082 4.082 23 C 0.242 3.758 24 N -0.344 5.344 25 N -0.024 5.024 26 N -0.127 5.127 27 N -0.306 5.306 28 C 0.167 3.833 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.376 0.624 41 H 0.248 0.752 42 H 0.413 0.587 43 H 0.193 0.807 44 H 0.207 0.793 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -13.308 -5.941 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.145 4.145 4 C -0.157 4.157 5 C 0.045 3.955 6 H 0.084 0.916 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.368 4.368 10 H 0.097 0.903 11 C -0.261 4.261 12 N -0.616 5.616 13 Si 0.794 3.206 14 H -0.190 1.190 15 H -0.222 1.222 16 H -0.231 1.231 17 N -0.341 5.341 18 C 0.357 3.643 19 O -0.432 6.432 20 C -0.144 4.144 21 C -0.042 4.042 22 C -0.105 4.105 23 C -0.011 4.011 24 N -0.205 5.205 25 N -0.017 5.017 26 N -0.111 5.111 27 N -0.084 5.084 28 C 0.037 3.963 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.208 0.792 41 H 0.057 0.943 42 H 0.251 0.749 43 H 0.210 0.790 44 H 0.224 0.776 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.787 -12.591 -5.942 17.612 hybrid contribution 1.376 0.778 0.479 1.651 sum -9.411 -11.813 -5.463 16.061 Atomic orbital electron populations 1.21750 0.96172 1.01641 1.01270 1.21543 0.95704 0.96417 1.02288 1.21581 0.94812 0.96420 1.01658 1.21929 0.95804 0.94085 1.03898 1.21201 0.94250 0.94107 0.85976 0.91581 1.21146 0.90722 0.86838 0.99599 1.42518 1.04348 1.03883 1.87793 1.19620 0.85132 0.92457 1.39621 0.90339 1.25395 1.00992 0.95867 1.03830 1.69800 1.34257 0.98960 1.58601 0.85226 0.81322 0.77737 0.76362 1.18971 1.22220 1.23084 1.45732 1.15146 1.55755 1.17485 1.17528 0.82523 0.78220 0.86012 1.90833 1.52149 1.60058 1.40191 1.19725 0.93889 1.03660 0.97084 1.21844 1.00181 0.93005 0.89174 1.20769 0.90417 0.97459 1.01869 1.23606 0.95645 0.97574 0.84226 1.75083 1.01109 1.19767 1.24518 1.77824 1.09262 1.11140 1.03455 1.82784 1.02486 1.17328 1.08483 1.48757 1.12391 1.34784 1.12443 1.21846 0.97360 0.90039 0.87089 0.91960 0.93461 0.93501 0.91489 0.91666 0.92865 0.93500 0.89890 0.89884 0.94576 0.93543 0.79198 0.94315 0.74914 0.79006 0.77592 0.78205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.82 16 2 C -0.12 -2.04 5.93 30.59 0.18 -1.86 16 3 C -0.11 -2.21 3.81 30.59 0.12 -2.09 16 4 C -0.12 -2.28 4.89 30.59 0.15 -2.13 16 5 C 0.15 3.77 2.41 44.99 0.11 3.88 16 6 H 0.07 2.05 7.58 -2.39 -0.02 2.04 16 7 C 0.14 4.41 5.82 86.38 0.50 4.91 16 8 N -0.74 -31.57 5.43 -343.45 -1.87 -33.43 16 9 C -0.24 -11.59 9.99 84.03 0.84 -10.76 16 10 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 11 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 12 N -0.97 -54.47 13.06 21.65 0.28 -54.19 16 13 Si 0.96 42.75 29.55 68.60 2.03 44.78 16 14 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 17 N -0.69 -15.43 4.42 -445.56 -1.97 -17.40 16 18 C 0.57 13.53 6.33 86.74 0.55 14.08 16 19 O -0.55 -16.13 13.42 -3.95 -0.05 -16.18 16 20 C -0.13 -2.62 5.84 -20.32 -0.12 -2.74 16 21 C -0.02 -0.23 9.53 22.53 0.21 -0.01 16 22 C -0.08 -1.26 10.09 22.34 0.23 -1.04 16 23 C 0.24 5.74 8.02 134.16 1.08 6.81 16 24 N -0.34 -9.87 12.26 -55.52 -0.68 -10.55 16 25 N -0.02 -0.73 13.35 37.02 0.49 -0.24 16 26 N -0.13 -3.75 13.99 37.02 0.52 -3.24 16 27 N -0.31 -7.66 3.92 -192.06 -0.75 -8.41 16 28 C 0.17 3.55 10.77 83.75 0.90 4.45 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.19 5.65 -2.39 -0.01 1.18 16 35 H 0.05 1.17 7.84 -2.39 -0.02 1.15 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.38 17.41 7.33 -92.71 -0.68 16.73 16 41 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 42 H 0.41 7.81 6.64 -92.71 -0.62 7.19 16 43 H 0.19 1.73 6.44 -2.91 -0.02 1.71 16 44 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.20 3.94 7.57 -2.91 -0.02 3.92 16 Total: -1.00 -67.84 376.12 3.67 -64.17 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.26 Total: 26.09 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.93 Total: 8.58 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -3.98 Total: -127.45 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.05 Total: -16.18 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.84 3.67 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506541049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.373 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds