Wall clock time and date at job start Tue Mar 31 2020 18:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99987 * 2 1 4 4 C 1.50701 * 119.99624 * 179.97438 * 2 1 3 5 5 N 1.46497 * 109.46910 * 93.89731 * 4 2 1 6 6 C 1.37834 * 127.16892 * 265.77778 * 5 4 2 7 7 C 1.46706 * 126.50792 * 0.03095 * 6 5 4 8 8 N 1.29700 * 126.54178 * 359.67801 * 7 6 5 9 9 N 1.39162 * 112.71087 * 179.82749 * 8 7 6 10 10 C 1.34865 * 111.29812 * 0.46708 * 9 8 7 11 11 O 1.21309 * 127.30480 * 179.72459 * 10 9 8 12 12 C 1.51449 * 126.54189 * 179.97438 * 7 6 5 13 13 N 1.31620 * 106.98342 * 180.02562 * 6 5 4 14 14 N 1.28511 * 109.88256 * 0.02562 * 13 6 5 15 15 C 1.31509 * 110.14279 * 359.97438 * 14 13 6 16 16 N 1.38269 * 126.33590 * 179.97438 * 15 14 13 17 17 C 1.46900 * 110.99995 * 255.41344 * 16 15 14 18 18 C 1.46903 * 110.99743 * 19.37122 * 16 15 14 19 19 H 1.09001 * 109.47198 * 299.99110 * 18 16 15 20 20 C 1.53003 * 109.47403 * 59.99739 * 18 16 15 21 21 C 1.50699 * 109.46838 * 179.97438 * 18 16 15 22 22 H 1.08003 * 120.00345 * 0.02562 * 21 18 16 23 23 C 1.37880 * 120.00252 * 179.97438 * 21 18 16 24 24 N 1.31513 * 119.99411 * 0.02562 * 23 21 18 25 25 Si 1.86798 * 120.00273 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.46975 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46941 * 120.00114 * 25 23 21 28 28 H 1.48504 * 109.47100 * 239.99878 * 25 23 21 29 29 H 1.07997 * 119.99752 * 5.41587 * 1 2 3 30 30 H 1.08004 * 119.99904 * 185.41920 * 1 2 3 31 31 H 1.09006 * 109.46643 * 240.00463 * 3 2 1 32 32 H 1.09002 * 109.46831 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47604 * 119.99919 * 3 2 1 34 34 H 1.08992 * 109.47573 * 333.89453 * 4 2 1 35 35 H 1.09007 * 109.46685 * 213.89560 * 4 2 1 36 36 H 0.96996 * 124.35088 * 180.20599 * 9 8 7 37 37 H 1.08999 * 110.57902 * 298.54665 * 12 7 6 38 38 H 1.08998 * 110.57899 * 61.29889 * 12 7 6 39 39 H 1.08998 * 109.47134 * 66.21475 * 17 16 15 40 40 H 1.09001 * 109.46680 * 186.21034 * 17 16 15 41 41 H 1.08996 * 109.47027 * 306.20871 * 17 16 15 42 42 H 1.09002 * 109.46814 * 179.97438 * 20 18 16 43 43 H 1.08992 * 109.46704 * 300.00038 * 20 18 16 44 44 H 1.09000 * 109.46875 * 60.00009 * 20 18 16 45 45 H 0.97006 * 119.99509 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.3889 -1.6817 -1.3773 6 6 1.6639 -2.5091 -2.2078 7 6 0.4056 -3.1888 -1.8808 8 7 -0.2334 -3.1304 -0.7537 9 7 -1.4018 -3.8862 -0.7587 10 6 -1.5783 -4.5074 -1.9427 11 8 -2.4925 -5.2390 -2.2600 12 6 -0.3918 -4.0976 -2.7929 13 7 2.3149 -2.5735 -3.3499 14 7 3.3785 -1.8548 -3.2879 15 6 3.4732 -1.2872 -2.1054 16 7 4.4849 -0.4469 -1.6787 17 6 5.3960 -1.1437 -0.7609 18 6 5.2174 0.1172 -2.8203 19 1 5.6575 -0.6909 -3.4047 20 6 4.2539 0.9166 -3.6999 21 6 6.3091 1.0260 -2.3172 22 1 6.4455 1.1699 -1.2555 23 6 7.1345 1.6732 -3.2121 24 7 6.9688 1.4976 -4.5049 25 14 8.4882 2.7992 -2.5884 26 1 8.4652 2.8256 -1.1039 27 1 9.8052 2.2948 -3.0538 28 1 8.2707 4.1718 -3.1119 29 1 -0.5399 0.9311 -0.0883 30 1 -0.5400 -0.9312 0.0883 31 1 2.6901 1.3628 -0.8901 32 1 1.3552 2.1335 -0.0005 33 1 2.6902 1.3629 0.8899 34 1 1.4460 -2.0810 0.4531 35 1 2.9839 -1.1930 0.5737 36 1 -2.0092 -3.9601 -0.0060 37 1 -0.7238 -3.5559 -3.6786 38 1 0.1982 -4.9690 -3.0767 39 1 5.9251 -1.9290 -1.3008 40 1 6.1162 -0.4332 -0.3550 41 1 4.8229 -1.5857 0.0540 42 1 4.7975 1.3354 -4.5467 43 1 3.4640 0.2595 -4.0637 44 1 3.8139 1.7246 -3.1154 45 1 7.5497 1.9525 -5.1346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515804871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:49 Heat of formation + Delta-G solvation = 143.316097 kcal Electronic energy + Delta-G solvation = -29485.423851 eV Core-core repulsion = 25542.507661 eV Total energy + Delta-G solvation = -3942.916190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.72083 -41.29914 -37.82038 -37.28846 -36.71005 -33.49092 -33.11038 -32.35019 -29.60230 -29.38291 -29.29709 -27.46754 -26.93515 -25.64903 -24.50433 -23.53797 -22.09780 -21.60422 -20.35273 -19.56852 -18.69991 -18.05372 -16.96300 -16.68635 -16.40601 -16.06859 -15.52710 -15.45469 -14.96439 -14.74688 -14.61148 -14.50634 -14.05158 -13.86658 -13.35808 -13.26284 -12.95726 -12.61624 -12.54974 -12.17663 -11.93131 -11.83721 -11.65576 -11.41843 -11.24767 -11.14390 -11.01295 -10.78881 -10.58533 -10.35735 -10.33670 -10.16796 -10.11826 -9.98831 -9.81274 -9.22144 -9.19509 -8.66990 -8.50491 -7.61652 -6.11831 -4.19622 0.60855 1.75831 1.96238 2.20657 2.42667 2.59111 3.17952 3.23251 3.31635 3.33463 3.37479 3.80185 4.22341 4.30079 4.48155 4.60192 4.66017 4.92768 5.00034 5.18288 5.20515 5.27186 5.29070 5.49513 5.60961 5.65801 5.82603 5.89890 5.93750 5.98554 6.06599 6.20557 6.28662 6.35914 6.54433 6.57422 6.79468 6.87047 6.99168 7.04333 7.08096 7.29678 7.51963 7.52468 7.65400 7.85189 8.15318 8.31619 8.79972 8.95590 9.45589 10.94540 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.003292 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.251986 B = 8503.578273 C = 9214.830547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C -0.121 4.121 4 C 0.145 3.855 5 N -0.458 5.458 6 C 0.184 3.816 7 C 0.202 3.798 8 N -0.235 5.235 9 N -0.565 5.565 10 C 0.504 3.496 11 O -0.499 6.499 12 C -0.154 4.154 13 N -0.230 5.230 14 N -0.303 5.303 15 C 0.412 3.588 16 N -0.458 5.458 17 C 0.041 3.959 18 C 0.228 3.772 19 H 0.028 0.972 20 C -0.135 4.135 21 C -0.517 4.517 22 H 0.066 0.934 23 C 0.065 3.935 24 N -0.882 5.882 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.437 0.563 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.036 0.964 40 H 0.097 0.903 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.021 0.979 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.185 -6.551 10.364 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.178 4.178 4 C 0.023 3.977 5 N -0.153 5.153 6 C -0.079 4.079 7 C 0.011 3.989 8 N -0.049 5.049 9 N -0.313 5.313 10 C 0.290 3.710 11 O -0.371 6.371 12 C -0.196 4.196 13 N -0.077 5.077 14 N -0.151 5.151 15 C 0.057 3.943 16 N -0.183 5.183 17 C -0.106 4.106 18 C 0.124 3.876 19 H 0.046 0.954 20 C -0.193 4.193 21 C -0.555 4.555 22 H 0.084 0.916 23 C -0.138 4.138 24 N -0.520 5.520 25 Si 0.727 3.273 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.283 0.717 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.055 0.945 40 H 0.116 0.884 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.533 -6.553 9.807 17.210 hybrid contribution 0.318 0.270 0.934 1.023 sum -12.215 -6.283 10.741 17.437 Atomic orbital electron populations 1.23968 0.95207 1.02373 0.99638 1.21850 0.95384 0.95435 1.01163 1.20920 1.00158 0.92754 1.03966 1.20922 1.01770 0.95886 0.79091 1.46361 1.18059 1.37082 1.13792 1.20517 0.95371 1.01828 0.90153 1.21213 0.91112 0.94531 0.92030 1.75460 0.96226 1.12004 1.21186 1.47470 1.21701 1.45526 1.16591 1.21262 0.86973 0.79470 0.83273 1.90842 1.34819 1.35642 1.75812 1.21902 0.95368 1.02027 1.00275 1.74477 1.01931 1.15268 1.16021 1.75017 1.12808 1.10490 1.16823 1.23133 0.90406 0.92951 0.87775 1.59123 1.11395 1.26052 1.21715 1.22333 0.95503 0.98339 0.94399 1.19426 0.90370 0.93870 0.83925 0.95428 1.21853 0.97728 0.98469 1.01277 1.21060 1.13625 1.27447 0.93406 0.91583 1.24890 0.97535 0.96572 0.94791 1.69921 1.38409 1.42744 1.00934 0.86430 0.81525 0.80426 0.78932 1.19720 1.21016 1.20968 0.88259 0.87658 0.89435 0.92491 0.91372 0.87546 0.88077 0.71748 0.83563 0.83550 0.94511 0.88414 0.93580 0.89077 0.95986 0.95409 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 13.91 29.01 0.40 -1.50 16 2 C -0.14 -1.67 5.64 -101.07 -0.57 -2.24 16 3 C -0.12 -1.58 10.12 36.00 0.36 -1.21 16 4 C 0.15 1.76 6.04 -5.19 -0.03 1.73 16 5 N -0.46 -6.97 2.82 -116.22 -0.33 -7.30 16 6 C 0.18 2.76 7.95 -153.73 -1.22 1.54 16 7 C 0.20 2.33 7.37 -79.71 -0.59 1.74 16 8 N -0.24 -2.41 8.92 35.12 0.31 -2.09 16 9 N -0.56 -5.01 7.11 31.48 0.22 -4.78 16 10 C 0.50 5.29 8.89 -10.50 -0.09 5.20 16 11 O -0.50 -6.76 18.03 5.53 0.10 -6.66 16 12 C -0.15 -1.46 6.91 -28.22 -0.19 -1.65 16 13 N -0.23 -4.12 12.24 32.43 0.40 -3.72 16 14 N -0.30 -6.24 9.90 30.30 0.30 -5.94 16 15 C 0.41 7.68 6.05 -318.98 -1.93 5.75 16 16 N -0.46 -8.85 4.30 -176.11 -0.76 -9.61 16 17 C 0.04 0.69 9.07 60.06 0.54 1.23 16 18 C 0.23 5.38 1.72 -68.86 -0.12 5.26 16 19 H 0.03 0.75 7.91 -51.93 -0.41 0.34 16 20 C -0.13 -3.25 8.79 37.16 0.33 -2.93 16 21 C -0.52 -12.86 7.95 -34.44 -0.27 -13.13 16 22 H 0.07 1.59 6.40 -52.48 -0.34 1.25 16 23 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 24 N -0.88 -24.01 11.32 55.43 0.63 -23.39 16 25 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.10 1.02 7.84 -52.49 -0.41 0.60 16 30 H 0.11 1.09 6.36 -52.48 -0.33 0.76 16 31 H 0.09 1.43 7.79 -51.93 -0.40 1.03 16 32 H 0.06 0.67 7.79 -51.93 -0.40 0.26 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 1.13 6.32 -51.93 -0.33 0.80 16 35 H 0.10 1.16 6.42 -51.93 -0.33 0.82 16 36 H 0.44 2.82 8.96 -183.30 -1.64 1.18 16 37 H 0.15 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.15 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.65 6.32 -51.93 -0.33 1.32 16 41 H 0.05 0.62 6.42 -51.93 -0.33 0.29 16 42 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 43 H 0.02 0.51 6.18 -51.93 -0.32 0.19 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -29.96 371.02 -9.18 -39.14 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.15 Total: 2.46 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.48 Total: 1.36 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.78 Total: -56.84 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.10 Total: -6.66 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.96 -9.18 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515804871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.458 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds