Wall clock time and date at job start Tue Mar 31 2020 18:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99987 * 2 1 4 4 C 1.50701 * 119.99624 * 179.97438 * 2 1 3 5 5 N 1.46497 * 109.46910 * 93.89731 * 4 2 1 6 6 C 1.37834 * 127.16892 * 265.77778 * 5 4 2 7 7 C 1.46706 * 126.50792 * 0.03095 * 6 5 4 8 8 N 1.29700 * 126.54178 * 359.67801 * 7 6 5 9 9 N 1.39162 * 112.71087 * 179.82749 * 8 7 6 10 10 C 1.34865 * 111.29812 * 0.46708 * 9 8 7 11 11 O 1.21309 * 127.30480 * 179.72459 * 10 9 8 12 12 C 1.51449 * 126.54189 * 179.97438 * 7 6 5 13 13 N 1.31620 * 106.98342 * 180.02562 * 6 5 4 14 14 N 1.28511 * 109.88256 * 0.02562 * 13 6 5 15 15 C 1.31509 * 110.14279 * 359.97438 * 14 13 6 16 16 N 1.38269 * 126.33590 * 179.97438 * 15 14 13 17 17 C 1.46900 * 110.99995 * 255.41344 * 16 15 14 18 18 C 1.46903 * 110.99743 * 19.37122 * 16 15 14 19 19 H 1.09001 * 109.47198 * 299.99110 * 18 16 15 20 20 C 1.53003 * 109.47403 * 59.99739 * 18 16 15 21 21 C 1.50699 * 109.46838 * 179.97438 * 18 16 15 22 22 H 1.08003 * 120.00345 * 0.02562 * 21 18 16 23 23 C 1.37880 * 120.00252 * 179.97438 * 21 18 16 24 24 N 1.31513 * 119.99411 * 0.02562 * 23 21 18 25 25 Si 1.86798 * 120.00273 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.46975 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46941 * 120.00114 * 25 23 21 28 28 H 1.48504 * 109.47100 * 239.99878 * 25 23 21 29 29 H 1.07997 * 119.99752 * 5.41587 * 1 2 3 30 30 H 1.08004 * 119.99904 * 185.41920 * 1 2 3 31 31 H 1.09006 * 109.46643 * 240.00463 * 3 2 1 32 32 H 1.09002 * 109.46831 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47604 * 119.99919 * 3 2 1 34 34 H 1.08992 * 109.47573 * 333.89453 * 4 2 1 35 35 H 1.09007 * 109.46685 * 213.89560 * 4 2 1 36 36 H 0.96996 * 124.35088 * 180.20599 * 9 8 7 37 37 H 1.08999 * 110.57902 * 298.54665 * 12 7 6 38 38 H 1.08998 * 110.57899 * 61.29889 * 12 7 6 39 39 H 1.08998 * 109.47134 * 66.21475 * 17 16 15 40 40 H 1.09001 * 109.46680 * 186.21034 * 17 16 15 41 41 H 1.08996 * 109.47027 * 306.20871 * 17 16 15 42 42 H 1.09002 * 109.46814 * 179.97438 * 20 18 16 43 43 H 1.08992 * 109.46704 * 300.00038 * 20 18 16 44 44 H 1.09000 * 109.46875 * 60.00009 * 20 18 16 45 45 H 0.97006 * 119.99509 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.3889 -1.6817 -1.3773 6 6 1.6639 -2.5091 -2.2078 7 6 0.4056 -3.1888 -1.8808 8 7 -0.2334 -3.1304 -0.7537 9 7 -1.4018 -3.8862 -0.7587 10 6 -1.5783 -4.5074 -1.9427 11 8 -2.4925 -5.2390 -2.2600 12 6 -0.3918 -4.0976 -2.7929 13 7 2.3149 -2.5735 -3.3499 14 7 3.3785 -1.8548 -3.2879 15 6 3.4732 -1.2872 -2.1054 16 7 4.4849 -0.4469 -1.6787 17 6 5.3960 -1.1437 -0.7609 18 6 5.2174 0.1172 -2.8203 19 1 5.6575 -0.6909 -3.4047 20 6 4.2539 0.9166 -3.6999 21 6 6.3091 1.0260 -2.3172 22 1 6.4455 1.1699 -1.2555 23 6 7.1345 1.6732 -3.2121 24 7 6.9688 1.4976 -4.5049 25 14 8.4882 2.7992 -2.5884 26 1 8.4652 2.8256 -1.1039 27 1 9.8052 2.2948 -3.0538 28 1 8.2707 4.1718 -3.1119 29 1 -0.5399 0.9311 -0.0883 30 1 -0.5400 -0.9312 0.0883 31 1 2.6901 1.3628 -0.8901 32 1 1.3552 2.1335 -0.0005 33 1 2.6902 1.3629 0.8899 34 1 1.4460 -2.0810 0.4531 35 1 2.9839 -1.1930 0.5737 36 1 -2.0092 -3.9601 -0.0060 37 1 -0.7238 -3.5559 -3.6786 38 1 0.1982 -4.9690 -3.0767 39 1 5.9251 -1.9290 -1.3008 40 1 6.1162 -0.4332 -0.3550 41 1 4.8229 -1.5857 0.0540 42 1 4.7975 1.3354 -4.5467 43 1 3.4640 0.2595 -4.0637 44 1 3.8139 1.7246 -3.1154 45 1 7.5497 1.9525 -5.1346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515804871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:48 Heat of formation + Delta-G solvation = 125.503443 kcal Electronic energy + Delta-G solvation = -29486.196265 eV Core-core repulsion = 25542.507661 eV Total energy + Delta-G solvation = -3943.688605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.01967 -42.19513 -38.96337 -38.66431 -37.77228 -34.97470 -34.52146 -33.45390 -31.22138 -30.61125 -30.40747 -28.54899 -27.94950 -27.35895 -26.10125 -24.69996 -23.59263 -22.61445 -21.53975 -20.95077 -19.74650 -18.94047 -18.41836 -17.95381 -17.70550 -17.26345 -16.85261 -16.74921 -16.33786 -15.83585 -15.74252 -15.51843 -15.43133 -15.01309 -14.91732 -14.30377 -14.17998 -14.00218 -13.68882 -13.39969 -13.21832 -12.94603 -12.88428 -12.76642 -12.68102 -12.57018 -12.52262 -12.22170 -12.18404 -12.12114 -12.01905 -11.65563 -11.30341 -11.13690 -11.10055 -10.82268 -10.53151 -10.15836 -9.96659 -9.09993 -8.08749 -6.22573 -0.41837 0.70039 0.94658 1.31001 1.34480 1.47494 1.49259 1.55270 1.60948 1.91241 2.38034 2.47074 2.90913 3.02796 3.23234 3.38492 3.62119 3.72365 3.90528 4.06066 4.20013 4.22054 4.29248 4.42844 4.57231 4.59591 4.69982 4.75531 4.84656 4.85510 4.91419 4.95231 4.98880 5.07212 5.13939 5.26521 5.41788 5.47587 5.49040 5.62189 5.70066 5.84178 5.86515 5.98715 6.14089 6.20009 6.56813 6.72865 6.87508 7.45898 7.60013 8.98113 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.003292 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.251986 B = 8503.578273 C = 9214.830547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.155 4.155 3 C -0.117 4.117 4 C 0.141 3.859 5 N -0.450 5.450 6 C 0.212 3.788 7 C 0.187 3.813 8 N -0.214 5.214 9 N -0.548 5.548 10 C 0.511 3.489 11 O -0.528 6.528 12 C -0.149 4.149 13 N -0.260 5.260 14 N -0.349 5.349 15 C 0.397 3.603 16 N -0.452 5.452 17 C 0.041 3.959 18 C 0.241 3.759 19 H -0.015 1.015 20 C -0.117 4.117 21 C -0.521 4.521 22 H 0.076 0.924 23 C 0.015 3.985 24 N -0.918 5.918 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.285 1.285 28 H -0.286 1.286 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.450 0.550 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.021 0.979 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.027 0.973 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.747 -6.819 13.022 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C -0.173 4.173 4 C 0.021 3.979 5 N -0.144 5.144 6 C -0.054 4.054 7 C -0.004 4.004 8 N -0.028 5.028 9 N -0.298 5.298 10 C 0.298 3.702 11 O -0.402 6.402 12 C -0.190 4.190 13 N -0.105 5.105 14 N -0.196 5.196 15 C 0.040 3.960 16 N -0.176 5.176 17 C -0.105 4.105 18 C 0.136 3.864 19 H 0.003 0.997 20 C -0.176 4.176 21 C -0.559 4.559 22 H 0.094 0.906 23 C -0.185 4.185 24 N -0.557 5.557 25 Si 0.789 3.211 26 H -0.182 1.182 27 H -0.212 1.212 28 H -0.212 1.212 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.128 0.872 36 H 0.299 0.701 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.040 0.960 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.046 0.954 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.113 -6.827 12.514 20.059 hybrid contribution 0.600 0.263 0.208 0.688 sum -13.512 -6.564 12.722 19.685 Atomic orbital electron populations 1.24132 0.94731 1.03275 0.97250 1.21796 0.95797 0.94924 1.03094 1.20837 1.00084 0.93820 1.02584 1.21204 1.02698 0.96594 0.77406 1.46504 1.16885 1.36380 1.14657 1.20936 0.95316 0.99989 0.89109 1.20956 0.90523 0.95628 0.93260 1.75406 0.96066 1.10902 1.20426 1.47460 1.21093 1.44427 1.16812 1.21264 0.86565 0.78837 0.83521 1.90844 1.35994 1.37027 1.76363 1.21962 0.94708 1.02217 1.00151 1.74384 1.02159 1.16306 1.17686 1.74902 1.14440 1.11884 1.18374 1.22918 0.91123 0.93802 0.88154 1.58995 1.11437 1.27119 1.20079 1.22410 0.95686 0.97806 0.94642 1.18981 0.90258 0.92375 0.84791 0.99741 1.21615 0.97326 0.98262 1.00374 1.21377 1.13670 1.27000 0.93842 0.90596 1.25715 0.99820 0.98090 0.94869 1.70074 1.39492 1.43965 1.02177 0.85416 0.78461 0.78117 0.79065 1.18180 1.21152 1.21168 0.87328 0.86721 0.93117 0.91558 0.90487 0.85519 0.87240 0.70112 0.82397 0.82052 0.95976 0.88595 0.89913 0.91856 0.96163 0.95366 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 13.91 67.77 0.94 -1.97 16 2 C -0.16 -3.40 5.64 -16.49 -0.09 -3.49 16 3 C -0.12 -2.86 10.12 71.24 0.72 -2.14 16 4 C 0.14 3.07 6.04 85.63 0.52 3.58 16 5 N -0.45 -13.12 2.82 -521.62 -1.47 -14.59 16 6 C 0.21 6.06 7.95 135.69 1.08 7.14 16 7 C 0.19 3.83 7.37 45.33 0.33 4.16 16 8 N -0.21 -3.62 8.92 -42.81 -0.38 -4.00 16 9 N -0.55 -7.80 7.11 -172.64 -1.23 -9.03 16 10 C 0.51 9.31 8.89 87.93 0.78 10.09 16 11 O -0.53 -13.18 18.03 -3.12 -0.06 -13.23 16 12 C -0.15 -2.45 6.91 29.63 0.20 -2.24 16 13 N -0.26 -9.37 12.24 -51.31 -0.63 -10.00 16 14 N -0.35 -14.80 9.90 -58.06 -0.58 -15.38 16 15 C 0.40 14.89 6.05 260.15 1.57 16.47 16 16 N -0.45 -17.70 4.30 -711.08 -3.06 -20.76 16 17 C 0.04 1.36 9.07 127.69 1.16 2.52 16 18 C 0.24 11.84 1.72 44.17 0.08 11.91 16 19 H -0.02 -0.86 7.91 -2.39 -0.02 -0.88 16 20 C -0.12 -5.92 8.79 71.98 0.63 -5.28 16 21 C -0.52 -26.32 7.95 25.60 0.20 -26.11 16 22 H 0.08 3.61 6.40 -2.91 -0.02 3.60 16 23 C 0.01 0.76 5.30 84.66 0.45 1.21 16 24 N -0.92 -51.76 11.32 21.45 0.24 -51.52 16 25 Si 0.96 41.21 29.54 68.60 2.03 43.23 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 29 H 0.11 1.86 7.84 -2.91 -0.02 1.83 16 30 H 0.11 1.90 6.36 -2.91 -0.02 1.88 16 31 H 0.05 1.64 7.79 -2.38 -0.02 1.62 16 32 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.13 2.21 6.32 -2.39 -0.02 2.19 16 35 H 0.11 2.20 6.42 -2.38 -0.02 2.18 16 36 H 0.45 4.13 8.96 -213.92 -1.92 2.21 16 37 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 3.18 6.32 -2.39 -0.02 3.17 16 41 H 0.08 2.09 6.42 -2.39 -0.02 2.07 16 42 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 43 H 0.02 0.98 6.18 -2.39 -0.01 0.97 16 44 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -67.27 371.02 2.58 -64.69 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.87 Total: 14.74 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 8.58 Total: 15.85 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -7.10 Total: -125.28 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.06 Total: -13.23 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -67.27 2.58 -64.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515804871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.188 kcal (2) G-P(sol) polarization free energy of solvation -67.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds