Wall clock time and date at job start Tue Mar 31 2020 18:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99897 * 2 1 4 4 C 1.50701 * 119.99612 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.46844 * 95.00839 * 4 2 1 6 6 C 1.37832 * 127.16311 * 266.94050 * 5 4 2 7 7 C 1.46705 * 126.51044 * 359.97438 * 6 5 4 8 8 N 1.29692 * 126.54682 * 359.68955 * 7 6 5 9 9 N 1.39163 * 112.71704 * 179.82484 * 8 7 6 10 10 C 1.34859 * 111.29221 * 0.46047 * 9 8 7 11 11 O 1.21324 * 127.30051 * 179.72842 * 10 9 8 12 12 C 1.51452 * 126.54211 * 179.97438 * 7 6 5 13 13 N 1.31623 * 106.98054 * 180.02562 * 6 5 4 14 14 N 1.28513 * 109.88123 * 359.74736 * 13 6 5 15 15 C 1.31501 * 110.14307 * 0.42271 * 14 13 6 16 16 N 1.38269 * 126.33830 * 179.85846 * 15 14 13 17 17 C 1.46901 * 110.99441 * 294.14748 * 16 15 14 18 18 C 1.46895 * 111.00250 * 58.09934 * 16 15 14 19 19 H 1.09005 * 109.47176 * 55.00181 * 18 16 15 20 20 C 1.53003 * 109.47097 * 295.00394 * 18 16 15 21 21 C 1.50701 * 109.47337 * 175.00722 * 18 16 15 22 22 H 1.07999 * 119.99836 * 27.36551 * 21 18 16 23 23 C 1.37874 * 119.99758 * 207.37302 * 21 18 16 24 24 N 1.31524 * 119.99891 * 185.38665 * 23 21 18 25 25 Si 1.86803 * 120.00284 * 5.38414 * 23 21 18 26 26 H 1.48492 * 109.46981 * 90.55088 * 25 23 21 27 27 H 1.48504 * 109.47115 * 210.54947 * 25 23 21 28 28 H 1.48492 * 109.46907 * 330.54835 * 25 23 21 29 29 H 1.08004 * 120.00395 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00010 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47315 * 239.99427 * 3 2 1 32 32 H 1.09000 * 109.47647 * 359.97438 * 3 2 1 33 33 H 1.09007 * 109.47026 * 120.00132 * 3 2 1 34 34 H 1.08996 * 109.47609 * 335.00721 * 4 2 1 35 35 H 1.09001 * 109.47185 * 215.00006 * 4 2 1 36 36 H 0.96998 * 124.35365 * 180.20979 * 9 8 7 37 37 H 1.08996 * 110.58565 * 298.55311 * 12 7 6 38 38 H 1.09003 * 110.58184 * 61.30237 * 12 7 6 39 39 H 1.08999 * 109.47501 * 54.76272 * 17 16 15 40 40 H 1.09007 * 109.46999 * 174.76097 * 17 16 15 41 41 H 1.09002 * 109.47048 * 294.75841 * 17 16 15 42 42 H 1.08998 * 109.47104 * 185.98561 * 20 18 16 43 43 H 1.08997 * 109.47366 * 305.98491 * 20 18 16 44 44 H 1.09002 * 109.46977 * 65.98743 * 20 18 16 45 45 H 0.97001 * 119.99921 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4120 -1.6684 -1.3753 6 6 1.6899 -2.4698 -2.2332 7 6 0.4126 -3.1307 -1.9432 8 7 -0.2494 -3.0768 -0.8292 9 7 -1.4311 -3.8106 -0.8703 10 6 -1.5934 -4.4110 -2.0669 11 8 -2.5139 -5.1207 -2.4146 12 6 -0.3816 -4.0110 -2.8855 13 7 2.3645 -2.5305 -3.3618 14 7 3.4370 -1.8287 -3.2682 15 6 3.5191 -1.2843 -2.0740 16 7 4.5362 -0.4686 -1.6136 17 6 5.8017 -1.2084 -1.5176 18 6 4.6843 0.7195 -2.4647 19 1 3.7282 1.2385 -2.5337 20 6 5.1346 0.2922 -3.8631 21 6 5.7145 1.6417 -1.8652 22 1 6.5039 1.2404 -1.2471 23 6 5.6489 2.9977 -2.1057 24 7 6.6054 3.7895 -1.6720 25 14 4.2018 3.7105 -3.0477 26 1 3.1295 4.0913 -2.0937 27 1 4.6444 4.9117 -3.8004 28 1 3.6813 2.6950 -3.9979 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.6902 1.3628 -0.8899 32 1 1.3552 2.1336 -0.0005 33 1 2.6902 1.3628 0.8900 34 1 1.4385 -2.0853 0.4351 35 1 2.9741 -1.1987 0.5900 36 1 -2.0557 -3.8840 -0.1319 37 1 -0.6845 -3.4504 -3.7699 38 1 0.1983 -4.8891 -3.1698 39 1 6.0290 -1.6661 -2.4804 40 1 6.6034 -0.5229 -1.2429 41 1 5.7117 -1.9852 -0.7583 42 1 5.3469 1.1773 -4.4627 43 1 6.0346 -0.3177 -3.7845 44 1 4.3432 -0.2874 -4.3384 45 1 6.5595 4.7435 -1.8415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515804874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:54 Heat of formation + Delta-G solvation = 147.835187 kcal Electronic energy + Delta-G solvation = -29764.096354 eV Core-core repulsion = 25821.376127 eV Total energy + Delta-G solvation = -3942.720228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.85484 -41.38287 -37.92708 -37.56019 -36.74419 -33.50109 -33.03924 -32.41227 -30.08692 -29.64361 -29.07214 -27.45834 -26.84540 -25.56351 -25.33686 -23.69782 -22.10773 -21.47977 -20.34916 -19.63804 -18.64744 -18.13222 -17.27523 -16.84929 -16.71089 -16.07189 -15.69640 -15.56442 -15.02480 -14.78683 -14.61618 -14.47829 -14.05644 -13.75991 -13.62025 -13.25562 -12.87107 -12.68385 -12.54889 -12.28468 -12.00226 -11.81168 -11.72800 -11.67904 -11.55623 -11.30834 -11.19737 -11.00400 -10.68240 -10.57184 -10.39220 -10.19720 -10.13082 -9.86772 -9.77498 -9.26494 -9.07605 -8.70370 -8.54305 -8.08048 -6.22906 -4.22802 0.50257 1.72487 1.87816 2.12830 2.29469 2.53041 2.99981 3.16715 3.27486 3.28339 3.30862 3.71606 4.18011 4.27803 4.30557 4.62392 4.68208 4.84928 4.93137 5.11979 5.18884 5.24220 5.37281 5.44384 5.58035 5.71272 5.87479 5.89203 6.00422 6.03580 6.07799 6.13982 6.16199 6.36906 6.47032 6.56123 6.56377 6.63083 6.69617 6.84885 6.95832 6.96935 7.13950 7.35704 7.45172 7.63089 7.80646 8.40260 8.71060 8.80654 9.37542 10.88809 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.003831 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.124111 B = 7307.197125 C = 7847.462350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.137 4.137 3 C -0.124 4.124 4 C 0.146 3.854 5 N -0.443 5.443 6 C 0.197 3.803 7 C 0.195 3.805 8 N -0.228 5.228 9 N -0.564 5.564 10 C 0.505 3.495 11 O -0.497 6.497 12 C -0.153 4.153 13 N -0.239 5.239 14 N -0.302 5.302 15 C 0.396 3.604 16 N -0.460 5.460 17 C 0.038 3.962 18 C 0.194 3.806 19 H 0.041 0.959 20 C -0.180 4.180 21 C -0.505 4.505 22 H 0.086 0.914 23 C 0.082 3.918 24 N -0.890 5.890 25 Si 0.861 3.139 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.261 1.261 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.438 0.562 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.040 0.960 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 -11.775 3.950 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.138 4.138 3 C -0.180 4.180 4 C 0.024 3.976 5 N -0.134 5.134 6 C -0.067 4.067 7 C 0.004 3.996 8 N -0.041 5.041 9 N -0.312 5.312 10 C 0.290 3.710 11 O -0.369 6.369 12 C -0.195 4.195 13 N -0.086 5.086 14 N -0.149 5.149 15 C 0.041 3.959 16 N -0.187 5.187 17 C -0.109 4.109 18 C 0.089 3.911 19 H 0.059 0.941 20 C -0.239 4.239 21 C -0.543 4.543 22 H 0.104 0.896 23 C -0.121 4.121 24 N -0.527 5.527 25 Si 0.687 3.313 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.186 1.186 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.284 0.716 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.310 -11.858 3.805 17.511 hybrid contribution -1.254 0.491 -0.144 1.354 sum -13.564 -11.367 3.661 18.072 Atomic orbital electron populations 1.24005 0.95201 1.02373 0.99836 1.21901 0.95360 0.95534 1.01026 1.20980 1.00092 0.92491 1.04456 1.21010 1.02018 0.95767 0.78836 1.46596 1.17108 1.36009 1.13734 1.20601 0.94491 1.01581 0.90000 1.21205 0.91020 0.95040 0.92295 1.75464 0.95473 1.11667 1.21513 1.47487 1.20224 1.47007 1.16488 1.21257 0.87355 0.79242 0.83104 1.90852 1.35033 1.36328 1.74702 1.21897 0.95016 1.02399 1.00169 1.74484 1.01557 1.15595 1.17013 1.74969 1.13025 1.11357 1.15581 1.23080 0.89840 0.95944 0.87012 1.59446 1.02983 1.05251 1.50974 1.22406 0.90543 0.97789 1.00133 1.19877 0.97645 0.85326 0.88204 0.94136 1.22768 1.01172 1.00665 0.99316 1.20794 1.10835 0.90549 1.32124 0.89636 1.24822 0.95613 0.96766 0.94941 1.69862 1.32188 1.04745 1.45885 0.87121 0.83746 0.79361 0.81026 1.19979 1.21078 1.18591 0.88240 0.87574 0.89781 0.92539 0.90702 0.87553 0.87156 0.71609 0.83559 0.83513 0.94091 0.88168 0.93138 0.93150 0.93034 0.92848 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 13.90 29.01 0.40 -1.65 16 2 C -0.14 -1.81 5.63 -101.07 -0.57 -2.38 16 3 C -0.12 -1.89 10.12 36.00 0.36 -1.53 16 4 C 0.15 1.83 6.05 -5.19 -0.03 1.80 16 5 N -0.44 -6.63 2.82 -116.22 -0.33 -6.96 16 6 C 0.20 2.80 7.95 -153.73 -1.22 1.58 16 7 C 0.20 2.14 7.37 -79.71 -0.59 1.56 16 8 N -0.23 -2.26 8.70 35.12 0.31 -1.96 16 9 N -0.56 -4.81 7.11 31.48 0.22 -4.59 16 10 C 0.50 5.06 8.89 -10.50 -0.09 4.97 16 11 O -0.50 -6.52 18.03 5.52 0.10 -6.42 16 12 C -0.15 -1.35 6.91 -28.22 -0.19 -1.54 16 13 N -0.24 -3.94 12.25 32.43 0.40 -3.55 16 14 N -0.30 -5.60 9.47 30.30 0.29 -5.32 16 15 C 0.40 7.01 6.33 -318.99 -2.02 4.99 16 16 N -0.46 -8.61 4.62 -176.10 -0.81 -9.42 16 17 C 0.04 0.65 8.71 60.07 0.52 1.17 16 18 C 0.19 4.22 1.32 -68.87 -0.09 4.13 16 19 H 0.04 0.94 4.18 -51.93 -0.22 0.72 16 20 C -0.18 -3.81 8.04 37.16 0.30 -3.51 16 21 C -0.50 -12.57 8.61 -34.44 -0.30 -12.86 16 22 H 0.09 2.27 6.28 -52.49 -0.33 1.94 16 23 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 24 N -0.89 -25.06 13.96 55.43 0.77 -24.29 16 25 Si 0.86 20.10 26.44 -169.99 -4.49 15.60 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.26 -6.00 6.22 56.52 0.35 -5.65 16 29 H 0.10 1.10 7.83 -52.48 -0.41 0.69 16 30 H 0.11 1.14 6.10 -52.49 -0.32 0.82 16 31 H 0.08 1.57 5.92 -51.93 -0.31 1.26 16 32 H 0.06 0.81 7.78 -51.93 -0.40 0.40 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 1.14 6.38 -51.93 -0.33 0.81 16 35 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.44 2.72 8.96 -183.30 -1.64 1.07 16 37 H 0.15 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.70 6.61 -51.93 -0.34 0.36 16 40 H 0.10 1.82 5.93 -51.92 -0.31 1.51 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 1.10 7.23 -51.93 -0.38 0.73 16 43 H 0.05 1.04 6.28 -51.93 -0.33 0.72 16 44 H 0.05 1.11 5.85 -51.93 -0.30 0.81 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -29.93 363.51 -8.60 -38.53 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.92 Total: 4.11 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.61 Total: -1.22 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.85 Total: -56.08 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: 0.10 Total: -6.42 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.49 Total: 15.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.93 -8.60 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515804874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.369 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds