Wall clock time and date at job start Tue Mar 31 2020 18:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99897 * 2 1 4 4 C 1.50701 * 119.99612 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.46844 * 95.00839 * 4 2 1 6 6 C 1.37832 * 127.16311 * 266.94050 * 5 4 2 7 7 C 1.46705 * 126.51044 * 359.97438 * 6 5 4 8 8 N 1.29692 * 126.54682 * 359.68955 * 7 6 5 9 9 N 1.39163 * 112.71704 * 179.82484 * 8 7 6 10 10 C 1.34859 * 111.29221 * 0.46047 * 9 8 7 11 11 O 1.21324 * 127.30051 * 179.72842 * 10 9 8 12 12 C 1.51452 * 126.54211 * 179.97438 * 7 6 5 13 13 N 1.31623 * 106.98054 * 180.02562 * 6 5 4 14 14 N 1.28513 * 109.88123 * 359.74736 * 13 6 5 15 15 C 1.31501 * 110.14307 * 0.42271 * 14 13 6 16 16 N 1.38269 * 126.33830 * 179.85846 * 15 14 13 17 17 C 1.46901 * 110.99441 * 294.14748 * 16 15 14 18 18 C 1.46895 * 111.00250 * 58.09934 * 16 15 14 19 19 H 1.09005 * 109.47176 * 55.00181 * 18 16 15 20 20 C 1.53003 * 109.47097 * 295.00394 * 18 16 15 21 21 C 1.50701 * 109.47337 * 175.00722 * 18 16 15 22 22 H 1.07999 * 119.99836 * 27.36551 * 21 18 16 23 23 C 1.37874 * 119.99758 * 207.37302 * 21 18 16 24 24 N 1.31524 * 119.99891 * 185.38665 * 23 21 18 25 25 Si 1.86803 * 120.00284 * 5.38414 * 23 21 18 26 26 H 1.48492 * 109.46981 * 90.55088 * 25 23 21 27 27 H 1.48504 * 109.47115 * 210.54947 * 25 23 21 28 28 H 1.48492 * 109.46907 * 330.54835 * 25 23 21 29 29 H 1.08004 * 120.00395 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00010 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47315 * 239.99427 * 3 2 1 32 32 H 1.09000 * 109.47647 * 359.97438 * 3 2 1 33 33 H 1.09007 * 109.47026 * 120.00132 * 3 2 1 34 34 H 1.08996 * 109.47609 * 335.00721 * 4 2 1 35 35 H 1.09001 * 109.47185 * 215.00006 * 4 2 1 36 36 H 0.96998 * 124.35365 * 180.20979 * 9 8 7 37 37 H 1.08996 * 110.58565 * 298.55311 * 12 7 6 38 38 H 1.09003 * 110.58184 * 61.30237 * 12 7 6 39 39 H 1.08999 * 109.47501 * 54.76272 * 17 16 15 40 40 H 1.09007 * 109.46999 * 174.76097 * 17 16 15 41 41 H 1.09002 * 109.47048 * 294.75841 * 17 16 15 42 42 H 1.08998 * 109.47104 * 185.98561 * 20 18 16 43 43 H 1.08997 * 109.47366 * 305.98491 * 20 18 16 44 44 H 1.09002 * 109.46977 * 65.98743 * 20 18 16 45 45 H 0.97001 * 119.99921 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4120 -1.6684 -1.3753 6 6 1.6899 -2.4698 -2.2332 7 6 0.4126 -3.1307 -1.9432 8 7 -0.2494 -3.0768 -0.8292 9 7 -1.4311 -3.8106 -0.8703 10 6 -1.5934 -4.4110 -2.0669 11 8 -2.5139 -5.1207 -2.4146 12 6 -0.3816 -4.0110 -2.8855 13 7 2.3645 -2.5305 -3.3618 14 7 3.4370 -1.8287 -3.2682 15 6 3.5191 -1.2843 -2.0740 16 7 4.5362 -0.4686 -1.6136 17 6 5.8017 -1.2084 -1.5176 18 6 4.6843 0.7195 -2.4647 19 1 3.7282 1.2385 -2.5337 20 6 5.1346 0.2922 -3.8631 21 6 5.7145 1.6417 -1.8652 22 1 6.5039 1.2404 -1.2471 23 6 5.6489 2.9977 -2.1057 24 7 6.6054 3.7895 -1.6720 25 14 4.2018 3.7105 -3.0477 26 1 3.1295 4.0913 -2.0937 27 1 4.6444 4.9117 -3.8004 28 1 3.6813 2.6950 -3.9979 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.6902 1.3628 -0.8899 32 1 1.3552 2.1336 -0.0005 33 1 2.6902 1.3628 0.8900 34 1 1.4385 -2.0853 0.4351 35 1 2.9741 -1.1987 0.5900 36 1 -2.0557 -3.8840 -0.1319 37 1 -0.6845 -3.4504 -3.7699 38 1 0.1983 -4.8891 -3.1698 39 1 6.0290 -1.6661 -2.4804 40 1 6.6034 -0.5229 -1.2429 41 1 5.7117 -1.9852 -0.7583 42 1 5.3469 1.1773 -4.4627 43 1 6.0346 -0.3177 -3.7845 44 1 4.3432 -0.2874 -4.3384 45 1 6.5595 4.7435 -1.8415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515804874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:53 Heat of formation + Delta-G solvation = 129.377687 kcal Electronic energy + Delta-G solvation = -29764.896732 eV Core-core repulsion = 25821.376127 eV Total energy + Delta-G solvation = -3943.520605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.07743 -42.21394 -39.21014 -38.70964 -37.81227 -34.81528 -34.57772 -33.56354 -31.69421 -30.45384 -30.33295 -28.61274 -27.91261 -27.21141 -26.95444 -24.78487 -23.37204 -22.52376 -21.44770 -21.02547 -19.74661 -19.03419 -18.94886 -18.04999 -17.69236 -17.26958 -16.93720 -16.77673 -16.39190 -15.82674 -15.63447 -15.54859 -15.43401 -15.12905 -15.00620 -14.48040 -14.18006 -14.11951 -13.84701 -13.41694 -13.31526 -13.16328 -13.00474 -12.95034 -12.78756 -12.78244 -12.57685 -12.36802 -12.27624 -12.06428 -11.72919 -11.69965 -11.30847 -11.16614 -10.97202 -10.87127 -10.71239 -10.22498 -9.65849 -9.56913 -8.27027 -6.28665 -0.46280 0.65977 0.88643 1.27592 1.29580 1.30917 1.36423 1.42879 1.50348 1.83834 2.32879 2.37068 2.84540 2.93454 3.18662 3.36043 3.62361 3.68909 3.87552 4.13166 4.13935 4.22473 4.27409 4.41838 4.46253 4.55104 4.62490 4.64524 4.74055 4.79871 4.84438 4.88107 4.90244 4.94403 5.07887 5.14768 5.23390 5.41857 5.45465 5.47853 5.56937 5.59537 5.80585 5.97421 6.11493 6.14786 6.57866 6.71682 6.76736 7.34422 7.46711 8.87875 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.003831 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.124111 B = 7307.197125 C = 7847.462350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.157 4.157 3 C -0.121 4.121 4 C 0.145 3.855 5 N -0.440 5.440 6 C 0.221 3.779 7 C 0.183 3.817 8 N -0.214 5.214 9 N -0.549 5.549 10 C 0.510 3.490 11 O -0.528 6.528 12 C -0.146 4.146 13 N -0.260 5.260 14 N -0.326 5.326 15 C 0.378 3.622 16 N -0.460 5.460 17 C 0.042 3.958 18 C 0.205 3.795 19 H 0.031 0.969 20 C -0.172 4.172 21 C -0.494 4.494 22 H 0.062 0.938 23 C 0.035 3.965 24 N -0.935 5.935 25 Si 0.911 3.089 26 H -0.265 1.265 27 H -0.287 1.287 28 H -0.256 1.256 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.450 0.550 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 -13.375 4.347 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.178 4.178 4 C 0.025 3.975 5 N -0.131 5.131 6 C -0.044 4.044 7 C -0.008 4.008 8 N -0.028 5.028 9 N -0.298 5.298 10 C 0.297 3.703 11 O -0.402 6.402 12 C -0.188 4.188 13 N -0.106 5.106 14 N -0.172 5.172 15 C 0.022 3.978 16 N -0.185 5.185 17 C -0.105 4.105 18 C 0.098 3.902 19 H 0.049 0.951 20 C -0.231 4.231 21 C -0.532 4.532 22 H 0.080 0.920 23 C -0.164 4.164 24 N -0.575 5.575 25 Si 0.736 3.264 26 H -0.190 1.190 27 H -0.213 1.213 28 H -0.180 1.180 29 H 0.126 0.874 30 H 0.138 0.862 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.299 0.701 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.042 -13.474 4.226 20.632 hybrid contribution -0.517 0.859 -0.152 1.014 sum -15.559 -12.615 4.074 20.441 Atomic orbital electron populations 1.24177 0.94518 1.03449 0.96853 1.21761 0.95816 0.94689 1.03475 1.20887 0.99966 0.94269 1.02629 1.21184 1.02449 0.96248 0.77651 1.46719 1.16236 1.35647 1.14464 1.20981 0.94596 0.99898 0.88962 1.20999 0.90360 0.95978 0.93460 1.75408 0.95485 1.10843 1.21021 1.47488 1.19671 1.45977 1.16701 1.21317 0.87056 0.78570 0.83337 1.90853 1.36282 1.37792 1.75288 1.21961 0.94157 1.02721 0.99939 1.74422 1.01612 1.16414 1.18137 1.74850 1.14194 1.12016 1.16185 1.22803 0.90473 0.97011 0.87561 1.59178 1.03990 1.05110 1.50207 1.22379 0.89513 0.97753 1.00817 1.19557 0.95889 0.86178 0.88526 0.95092 1.22661 1.01520 1.00164 0.98754 1.20965 1.10652 0.90969 1.30614 0.92023 1.25428 0.97552 0.97356 0.96066 1.69978 1.34196 1.05009 1.48316 0.86312 0.81399 0.78562 0.80144 1.19048 1.21334 1.18006 0.87372 0.86195 0.93291 0.91904 0.91006 0.85261 0.87267 0.70139 0.82206 0.81771 0.94309 0.89905 0.90521 0.94381 0.92668 0.92278 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 13.90 67.78 0.94 -2.08 16 2 C -0.16 -3.78 5.63 -16.49 -0.09 -3.88 16 3 C -0.12 -3.60 10.12 71.23 0.72 -2.88 16 4 C 0.15 3.32 6.05 85.63 0.52 3.84 16 5 N -0.44 -12.30 2.82 -521.61 -1.47 -13.77 16 6 C 0.22 5.72 7.95 135.69 1.08 6.80 16 7 C 0.18 3.39 7.37 45.33 0.33 3.73 16 8 N -0.21 -3.41 8.70 -42.81 -0.37 -3.78 16 9 N -0.55 -7.31 7.11 -172.65 -1.23 -8.54 16 10 C 0.51 8.59 8.89 87.93 0.78 9.37 16 11 O -0.53 -12.55 18.03 -3.16 -0.06 -12.60 16 12 C -0.15 -2.08 6.91 29.63 0.20 -1.88 16 13 N -0.26 -8.11 12.25 -51.31 -0.63 -8.74 16 14 N -0.33 -11.74 9.47 -58.06 -0.55 -12.29 16 15 C 0.38 12.99 6.33 260.15 1.65 14.64 16 16 N -0.46 -17.13 4.62 -711.07 -3.28 -20.41 16 17 C 0.04 1.44 8.71 127.69 1.11 2.55 16 18 C 0.20 8.95 1.32 44.17 0.06 9.01 16 19 H 0.03 1.44 4.18 -2.38 -0.01 1.43 16 20 C -0.17 -7.29 8.04 71.98 0.58 -6.71 16 21 C -0.49 -25.22 8.61 25.60 0.22 -25.00 16 22 H 0.06 3.40 6.28 -2.91 -0.02 3.38 16 23 C 0.04 1.89 5.47 84.65 0.46 2.35 16 24 N -0.94 -54.28 13.96 21.45 0.30 -53.98 16 25 Si 0.91 41.95 26.44 68.60 1.81 43.76 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.26 -11.45 6.22 99.48 0.62 -10.83 16 29 H 0.11 2.00 7.83 -2.91 -0.02 1.98 16 30 H 0.12 2.04 6.10 -2.91 -0.02 2.02 16 31 H 0.05 1.82 5.92 -2.39 -0.01 1.80 16 32 H 0.06 1.72 7.78 -2.39 -0.02 1.70 16 33 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.13 2.32 6.38 -2.39 -0.02 2.30 16 35 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.45 3.88 8.96 -213.92 -1.92 1.96 16 37 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.32 6.61 -2.39 -0.02 1.31 16 40 H 0.08 3.10 5.93 -2.38 -0.01 3.08 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.04 1.67 7.23 -2.39 -0.02 1.65 16 43 H 0.05 2.25 6.28 -2.39 -0.02 2.24 16 44 H 0.06 2.45 5.85 -2.39 -0.01 2.44 16 45 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -65.36 363.51 2.14 -63.22 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.95 Total: 17.27 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 8.57 Total: 9.86 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -7.23 Total: -121.51 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.06 Total: -12.60 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.81 Total: 43.76 kcal Total: -65.36 2.14 -63.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515804874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.596 kcal (2) G-P(sol) polarization free energy of solvation -65.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds