Wall clock time and date at job start Tue Mar 31 2020 16:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 120.00199 * 2 1 4 4 C 1.52996 * 109.47331 * 273.01215 * 3 2 1 5 5 H 1.09007 * 112.96169 * 294.36835 * 4 3 2 6 6 C 1.53951 * 113.77048 * 66.04234 * 4 3 2 7 7 C 1.53946 * 86.28794 * 137.91317 * 6 4 3 8 8 N 1.47578 * 113.77367 * 162.69026 * 4 3 2 9 9 C 1.36934 * 134.49080 * 41.05767 * 8 4 3 10 10 H 1.07997 * 119.99878 * 4.87541 * 9 8 4 11 11 C 1.38810 * 120.00006 * 184.86811 * 9 8 4 12 12 N 1.31627 * 120.00079 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00244 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47283 * 89.99856 * 13 11 9 15 15 H 1.48504 * 109.47262 * 209.99789 * 13 11 9 16 16 H 1.48505 * 109.47124 * 330.00058 * 13 11 9 17 17 C 1.34772 * 119.99664 * 179.72425 * 2 1 3 18 18 O 1.21283 * 119.99884 * 175.46593 * 17 2 1 19 19 C 1.50699 * 120.00194 * 355.46764 * 17 2 1 20 20 C 1.50701 * 115.55056 * 294.47954 * 19 17 2 21 21 C 1.38262 * 119.98778 * 149.85744 * 20 19 17 22 22 C 1.38230 * 120.05229 * 179.72384 * 21 20 19 23 23 C 1.38220 * 120.02257 * 0.55006 * 22 21 20 24 24 C 1.38439 * 119.97015 * 359.72492 * 23 22 21 25 25 F 1.35102 * 120.02028 * 180.02562 * 24 23 22 26 26 C 1.38173 * 119.98367 * 330.13036 * 20 19 17 27 27 C 1.53002 * 117.49998 * 148.80536 * 19 17 2 28 28 C 1.53004 * 117.49851 * 80.14860 * 19 17 2 29 29 H 1.08991 * 109.46891 * 274.72728 * 1 2 3 30 30 H 1.09006 * 109.46605 * 34.72097 * 1 2 3 31 31 H 1.08997 * 109.47270 * 154.72200 * 1 2 3 32 32 H 1.08998 * 109.46968 * 33.00897 * 3 2 1 33 33 H 1.08998 * 109.46935 * 153.00853 * 3 2 1 34 34 H 1.08997 * 113.74132 * 252.25552 * 6 4 3 35 35 H 1.08993 * 113.74082 * 23.46054 * 6 4 3 36 36 H 1.08996 * 113.77217 * 90.69997 * 7 6 4 37 37 H 1.09004 * 113.76689 * 221.98285 * 7 6 4 38 38 H 0.96999 * 119.99649 * 180.02562 * 12 11 9 39 39 H 1.08002 * 119.97550 * 359.97438 * 21 20 19 40 40 H 1.07993 * 119.98790 * 180.27303 * 22 21 20 41 41 H 1.07995 * 120.01347 * 179.74385 * 23 22 21 42 42 H 1.07999 * 120.01802 * 359.97438 * 26 20 19 43 43 H 1.09003 * 117.49856 * 0.02562 * 27 19 17 44 44 H 1.09005 * 117.49764 * 145.02090 * 27 19 17 45 45 H 1.08996 * 117.49881 * 214.97729 * 28 19 17 46 46 H 1.08993 * 117.49981 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3870 1.7483 -1.4405 5 1 3.0288 1.0906 -2.0267 6 6 1.0720 2.1236 -2.1475 7 6 1.8365 3.3362 -2.7088 8 7 2.7405 3.1769 -1.5502 9 6 3.5712 4.0159 -0.8566 10 1 4.2008 3.6246 -0.0712 11 6 3.6040 5.3694 -1.1629 12 7 2.8364 5.8464 -2.1199 13 14 4.7376 6.5139 -0.2172 14 1 6.0547 6.5813 -0.8997 15 1 4.1379 7.8715 -0.1635 16 1 4.9213 5.9990 1.1635 17 6 2.1389 -1.1672 0.0056 18 8 3.3488 -1.1693 -0.0774 19 6 1.3889 -2.4697 0.1150 20 6 0.6629 -2.6944 1.4164 21 6 -0.4930 -3.4526 1.4409 22 6 -1.1568 -3.6644 2.6348 23 6 -0.6718 -3.1087 3.8037 24 6 0.4824 -2.3447 3.7794 25 9 0.9577 -1.8015 4.9215 26 6 1.1497 -2.1380 2.5837 27 6 1.9930 -3.6931 -0.5774 28 6 0.7450 -3.0232 -1.1578 29 1 -0.3633 0.0847 1.0241 30 1 -0.3633 0.8447 -0.5854 31 1 -0.3634 -0.9292 -0.4388 32 1 1.6330 2.0142 0.5598 33 1 3.1723 1.1254 0.4664 34 1 0.7638 1.4080 -2.9097 35 1 0.2662 2.3891 -1.4633 36 1 2.3174 3.1467 -3.6683 37 1 1.2614 4.2621 -2.6969 38 1 2.8596 6.7922 -2.3342 39 1 -0.8754 -3.8832 0.5272 40 1 -2.0572 -4.2604 2.6534 41 1 -1.1928 -3.2708 4.7357 42 1 2.0505 -1.5424 2.5637 43 1 2.9331 -3.5559 -1.1117 44 1 1.8650 -4.6606 -0.0917 45 1 -0.2034 -3.5503 -1.0538 46 1 0.8635 -2.4451 -2.0741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565827357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:47 Heat of formation + Delta-G solvation = 38.992473 kcal Electronic energy + Delta-G solvation = -28892.535111 eV Core-core repulsion = 24892.882396 eV Total energy + Delta-G solvation = -3999.652715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -49.09018 -40.84075 -39.02785 -37.88766 -36.45424 -35.13554 -32.11507 -31.42265 -30.47529 -28.77326 -27.85589 -26.58957 -24.76674 -23.36473 -23.34242 -22.99291 -22.23482 -21.22525 -19.21824 -18.85334 -17.86962 -16.96709 -16.65445 -16.47279 -16.14201 -15.96472 -15.77094 -15.42345 -15.03245 -14.76875 -14.26116 -14.02902 -13.83748 -13.50547 -13.41175 -13.02490 -12.82436 -12.71016 -12.51014 -12.32468 -12.26611 -12.05210 -11.64279 -11.57747 -11.36921 -11.07815 -10.96768 -10.88316 -10.77076 -10.65487 -10.45089 -9.82410 -9.75067 -9.64395 -9.48473 -9.19080 -8.91157 -8.74129 -8.34006 -6.83097 -5.71932 -3.05320 0.79523 0.88582 2.60037 3.01978 3.14094 3.42301 3.47602 3.48990 3.63149 3.89448 4.22990 4.32660 4.45096 4.51260 4.61105 4.65288 4.74071 4.79569 5.08521 5.16905 5.21997 5.30696 5.33012 5.41993 5.52976 5.55737 5.59102 5.63904 5.72438 5.79078 5.83805 5.84458 5.85309 5.97035 5.99637 6.11847 6.21079 6.30578 6.43984 6.55998 6.62202 6.72561 6.83828 7.28103 7.46687 7.57774 7.63031 8.03427 8.30245 9.09057 9.75546 10.64923 11.44217 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.003147 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.685638 B = 8894.474682 C = 9781.836058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.596 5.596 3 C 0.117 3.883 4 C 0.132 3.868 5 H 0.046 0.954 6 C -0.159 4.159 7 C 0.156 3.844 8 N -0.602 5.602 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.547 3.453 18 O -0.532 6.532 19 C -0.124 4.124 20 C -0.005 4.005 21 C -0.130 4.130 22 C -0.086 4.086 23 C -0.159 4.159 24 C 0.106 3.894 25 F -0.138 7.138 26 C -0.142 4.142 27 C -0.132 4.132 28 C -0.155 4.155 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.022 0.978 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.658 -22.263 6.120 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.328 5.328 3 C -0.006 4.006 4 C 0.024 3.976 5 H 0.063 0.937 6 C -0.197 4.197 7 C 0.030 3.970 8 N -0.328 5.328 9 C -0.348 4.348 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.333 3.667 18 O -0.408 6.408 19 C -0.127 4.127 20 C -0.005 4.005 21 C -0.148 4.148 22 C -0.104 4.104 23 C -0.177 4.177 24 C 0.087 3.913 25 F -0.116 7.116 26 C -0.161 4.161 27 C -0.169 4.169 28 C -0.192 4.192 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.845 -21.871 6.210 25.636 hybrid contribution 0.803 0.902 0.699 1.395 sum -11.042 -20.970 6.909 24.686 Atomic orbital electron populations 1.21925 0.79679 1.03451 1.01753 1.47710 1.07019 1.05961 1.72090 1.21823 0.97116 0.82570 0.99124 1.22499 0.93527 0.88309 0.93263 0.93703 1.23790 0.96887 0.99527 0.99472 1.22305 0.89494 0.95716 0.89436 1.46050 1.51179 1.02863 1.32722 1.19022 1.15491 0.88007 1.12326 0.90437 1.24758 1.00035 0.96559 0.98995 1.69823 1.41653 1.12993 1.32352 0.86154 0.80111 0.80382 0.79348 1.21676 1.21664 1.20594 1.19246 0.87046 0.83762 0.76639 1.90728 1.13777 1.86823 1.49488 1.20130 1.04672 0.95222 0.92670 1.18547 0.94089 0.96308 0.91601 1.21076 0.95077 0.99898 0.98725 1.20951 0.99558 0.98482 0.91396 1.21165 0.96291 1.00007 1.00277 1.17648 0.94698 0.96946 0.82031 1.91523 1.87938 1.83970 1.48208 1.21007 1.01535 1.02497 0.91028 1.23120 0.98280 0.94458 1.01029 1.23249 0.98025 1.02839 0.95106 0.93038 0.90222 0.91006 0.89911 0.90410 0.93403 0.90825 0.95990 0.90405 0.93761 0.84916 0.84784 0.84727 0.84836 0.87153 0.87689 0.87310 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 9.45 59.85 0.57 1.42 16 2 N -0.60 -8.88 2.83 -181.57 -0.51 -9.40 16 3 C 0.12 2.18 5.40 -4.04 -0.02 2.16 16 4 C 0.13 2.77 4.57 -66.86 -0.31 2.47 16 5 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 6 C -0.16 -2.96 6.68 -25.79 -0.17 -3.13 16 7 C 0.16 3.70 7.65 -2.85 -0.02 3.68 16 8 N -0.60 -15.57 3.58 -169.70 -0.61 -16.18 16 9 C -0.22 -6.28 10.51 -15.06 -0.16 -6.43 16 10 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.51 11.32 55.49 0.63 -26.88 16 13 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.55 8.37 5.76 -10.99 -0.06 8.30 16 18 O -0.53 -10.37 16.27 5.55 0.09 -10.28 16 19 C -0.12 -1.36 1.27 -156.81 -0.20 -1.55 16 20 C 0.00 -0.05 4.57 -104.64 -0.48 -0.53 16 21 C -0.13 -0.96 9.36 -39.58 -0.37 -1.33 16 22 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 23 C -0.16 -1.32 10.03 -39.51 -0.40 -1.72 16 24 C 0.11 1.17 7.30 -39.42 -0.29 0.88 16 25 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 26 C -0.14 -1.68 9.30 -39.52 -0.37 -2.04 16 27 C -0.13 -1.23 9.73 -26.69 -0.26 -1.49 16 28 C -0.16 -1.24 8.38 -26.69 -0.22 -1.47 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.91 5.62 -51.93 -0.29 0.62 16 31 H 0.07 0.66 5.74 -51.93 -0.30 0.36 16 32 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 33 H 0.08 1.61 7.39 -51.93 -0.38 1.23 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.29 6.71 -51.93 -0.35 0.95 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 2.03 6.97 -51.93 -0.36 1.66 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 39 H 0.13 0.67 5.95 -52.49 -0.31 0.36 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 1.83 7.34 -52.49 -0.39 1.45 16 43 H 0.11 1.19 8.00 -51.93 -0.42 0.78 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.11 0.58 6.10 -51.93 -0.32 0.26 16 46 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -33.68 376.64 -9.43 -43.10 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.46 Total: 0.13 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.25 Total: -2.06 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.49 Total: -52.46 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.68 -9.43 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565827357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.096 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds