Wall clock time and date at job start Tue Mar 31 2020 16:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 120.00199 * 2 1 4 4 C 1.52996 * 109.47331 * 273.01215 * 3 2 1 5 5 H 1.09007 * 112.96169 * 294.36835 * 4 3 2 6 6 C 1.53951 * 113.77048 * 66.04234 * 4 3 2 7 7 C 1.53946 * 86.28794 * 137.91317 * 6 4 3 8 8 N 1.47578 * 113.77367 * 162.69026 * 4 3 2 9 9 C 1.36934 * 134.49080 * 41.05767 * 8 4 3 10 10 H 1.07997 * 119.99878 * 4.87541 * 9 8 4 11 11 C 1.38810 * 120.00006 * 184.86811 * 9 8 4 12 12 N 1.31627 * 120.00079 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00244 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47283 * 89.99856 * 13 11 9 15 15 H 1.48504 * 109.47262 * 209.99789 * 13 11 9 16 16 H 1.48505 * 109.47124 * 330.00058 * 13 11 9 17 17 C 1.34772 * 119.99664 * 179.72425 * 2 1 3 18 18 O 1.21283 * 119.99884 * 175.46593 * 17 2 1 19 19 C 1.50699 * 120.00194 * 355.46764 * 17 2 1 20 20 C 1.50701 * 115.55056 * 294.47954 * 19 17 2 21 21 C 1.38262 * 119.98778 * 149.85744 * 20 19 17 22 22 C 1.38230 * 120.05229 * 179.72384 * 21 20 19 23 23 C 1.38220 * 120.02257 * 0.55006 * 22 21 20 24 24 C 1.38439 * 119.97015 * 359.72492 * 23 22 21 25 25 F 1.35102 * 120.02028 * 180.02562 * 24 23 22 26 26 C 1.38173 * 119.98367 * 330.13036 * 20 19 17 27 27 C 1.53002 * 117.49998 * 148.80536 * 19 17 2 28 28 C 1.53004 * 117.49851 * 80.14860 * 19 17 2 29 29 H 1.08991 * 109.46891 * 274.72728 * 1 2 3 30 30 H 1.09006 * 109.46605 * 34.72097 * 1 2 3 31 31 H 1.08997 * 109.47270 * 154.72200 * 1 2 3 32 32 H 1.08998 * 109.46968 * 33.00897 * 3 2 1 33 33 H 1.08998 * 109.46935 * 153.00853 * 3 2 1 34 34 H 1.08997 * 113.74132 * 252.25552 * 6 4 3 35 35 H 1.08993 * 113.74082 * 23.46054 * 6 4 3 36 36 H 1.08996 * 113.77217 * 90.69997 * 7 6 4 37 37 H 1.09004 * 113.76689 * 221.98285 * 7 6 4 38 38 H 0.96999 * 119.99649 * 180.02562 * 12 11 9 39 39 H 1.08002 * 119.97550 * 359.97438 * 21 20 19 40 40 H 1.07993 * 119.98790 * 180.27303 * 22 21 20 41 41 H 1.07995 * 120.01347 * 179.74385 * 23 22 21 42 42 H 1.07999 * 120.01802 * 359.97438 * 26 20 19 43 43 H 1.09003 * 117.49856 * 0.02562 * 27 19 17 44 44 H 1.09005 * 117.49764 * 145.02090 * 27 19 17 45 45 H 1.08996 * 117.49881 * 214.97729 * 28 19 17 46 46 H 1.08993 * 117.49981 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3870 1.7483 -1.4405 5 1 3.0288 1.0906 -2.0267 6 6 1.0720 2.1236 -2.1475 7 6 1.8365 3.3362 -2.7088 8 7 2.7405 3.1769 -1.5502 9 6 3.5712 4.0159 -0.8566 10 1 4.2008 3.6246 -0.0712 11 6 3.6040 5.3694 -1.1629 12 7 2.8364 5.8464 -2.1199 13 14 4.7376 6.5139 -0.2172 14 1 6.0547 6.5813 -0.8997 15 1 4.1379 7.8715 -0.1635 16 1 4.9213 5.9990 1.1635 17 6 2.1389 -1.1672 0.0056 18 8 3.3488 -1.1693 -0.0774 19 6 1.3889 -2.4697 0.1150 20 6 0.6629 -2.6944 1.4164 21 6 -0.4930 -3.4526 1.4409 22 6 -1.1568 -3.6644 2.6348 23 6 -0.6718 -3.1087 3.8037 24 6 0.4824 -2.3447 3.7794 25 9 0.9577 -1.8015 4.9215 26 6 1.1497 -2.1380 2.5837 27 6 1.9930 -3.6931 -0.5774 28 6 0.7450 -3.0232 -1.1578 29 1 -0.3633 0.0847 1.0241 30 1 -0.3633 0.8447 -0.5854 31 1 -0.3634 -0.9292 -0.4388 32 1 1.6330 2.0142 0.5598 33 1 3.1723 1.1254 0.4664 34 1 0.7638 1.4080 -2.9097 35 1 0.2662 2.3891 -1.4633 36 1 2.3174 3.1467 -3.6683 37 1 1.2614 4.2621 -2.6969 38 1 2.8596 6.7922 -2.3342 39 1 -0.8754 -3.8832 0.5272 40 1 -2.0572 -4.2604 2.6534 41 1 -1.1928 -3.2708 4.7357 42 1 2.0505 -1.5424 2.5637 43 1 2.9331 -3.5559 -1.1117 44 1 1.8650 -4.6606 -0.0917 45 1 -0.2034 -3.5503 -1.0538 46 1 0.8635 -2.4451 -2.0741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565827357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:43 Heat of formation + Delta-G solvation = 19.359071 kcal Electronic energy + Delta-G solvation = -28893.386479 eV Core-core repulsion = 24892.882396 eV Total energy + Delta-G solvation = -4000.504083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -49.94946 -41.82543 -40.15068 -39.38164 -37.33519 -36.48315 -34.24281 -32.10390 -31.13606 -30.22681 -29.89238 -27.67331 -25.81621 -25.32154 -24.22153 -23.98821 -23.08577 -22.30071 -20.96837 -19.96570 -18.86221 -18.63530 -17.72011 -17.44928 -17.19301 -16.94668 -16.89237 -16.65826 -16.38193 -16.10563 -15.75433 -15.19499 -15.12647 -14.63299 -14.34592 -14.19606 -13.95748 -13.92731 -13.74765 -13.53712 -13.44814 -13.24729 -12.91637 -12.88816 -12.58669 -12.43902 -12.36927 -12.29572 -12.22270 -11.83506 -11.69309 -11.58720 -11.56810 -11.35413 -10.86515 -10.78583 -9.89555 -9.70315 -9.58733 -8.92053 -7.91877 -5.26390 0.13882 0.20599 1.41329 1.42864 1.46720 1.51688 1.86499 2.44349 2.45953 2.88413 3.16922 3.26937 3.34966 3.47238 3.53755 3.73991 3.83884 3.89292 3.96219 4.10579 4.14084 4.18249 4.23163 4.34139 4.43810 4.46872 4.64765 4.65740 4.73119 4.75141 4.87569 4.89896 4.93565 4.97560 5.00858 5.02146 5.09205 5.18196 5.20504 5.21011 5.39376 5.41435 5.47486 5.55192 5.71071 5.91924 5.94482 6.38617 6.91050 7.10118 7.58603 8.54856 9.23600 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.003147 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.685638 B = 8894.474682 C = 9781.836058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.594 5.594 3 C 0.133 3.867 4 C 0.133 3.867 5 H 0.028 0.972 6 C -0.120 4.120 7 C 0.147 3.853 8 N -0.630 5.630 9 C -0.234 4.234 10 H 0.071 0.929 11 C -0.061 4.061 12 N -0.948 5.948 13 Si 0.973 3.027 14 H -0.289 1.289 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.541 3.459 18 O -0.589 6.589 19 C -0.139 4.139 20 C -0.009 4.009 21 C -0.114 4.114 22 C -0.071 4.071 23 C -0.155 4.155 24 C 0.078 3.922 25 F -0.157 7.157 26 C -0.168 4.168 27 C -0.137 4.137 28 C -0.124 4.124 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.012 0.988 37 H 0.052 0.948 38 H 0.249 0.751 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.129 0.871 45 H 0.153 0.847 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.415 -25.262 5.985 30.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.324 5.324 3 C 0.009 3.991 4 C 0.026 3.974 5 H 0.045 0.955 6 C -0.157 4.157 7 C 0.022 3.978 8 N -0.357 5.357 9 C -0.362 4.362 10 H 0.089 0.911 11 C -0.254 4.254 12 N -0.597 5.597 13 Si 0.802 3.198 14 H -0.216 1.216 15 H -0.214 1.214 16 H -0.197 1.197 17 C 0.330 3.670 18 O -0.469 6.469 19 C -0.142 4.142 20 C -0.009 4.009 21 C -0.132 4.132 22 C -0.089 4.089 23 C -0.173 4.173 24 C 0.059 3.941 25 F -0.136 7.136 26 C -0.187 4.187 27 C -0.174 4.174 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.188 0.812 40 H 0.194 0.806 41 H 0.172 0.828 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.147 0.853 45 H 0.170 0.830 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.644 -24.906 6.082 30.034 hybrid contribution 1.999 1.755 0.731 2.758 sum -13.645 -23.151 6.813 27.723 Atomic orbital electron populations 1.22166 0.76878 1.05252 1.02644 1.47736 1.08541 1.04478 1.71695 1.21313 0.96129 0.84516 0.97151 1.22556 0.94484 0.85789 0.94619 0.95469 1.23528 0.95536 0.97146 0.99529 1.22314 0.89831 0.96953 0.88742 1.46460 1.51039 1.04841 1.33332 1.19290 1.15671 0.88917 1.12371 0.91104 1.25535 1.01778 0.97913 1.00186 1.69990 1.43056 1.12926 1.33713 0.85163 0.78026 0.78271 0.78389 1.21643 1.21360 1.19695 1.20118 0.86700 0.85266 0.74907 1.90692 1.16527 1.87779 1.51902 1.19978 1.06266 0.93001 0.94970 1.18511 0.95175 0.97266 0.89971 1.21447 0.93118 0.98054 1.00552 1.21447 1.00142 0.97180 0.90083 1.21487 0.94894 0.98771 1.02168 1.17975 0.96276 0.98670 0.81222 1.91466 1.88447 1.84584 1.49103 1.20859 1.01129 1.03972 0.92769 1.23210 0.98356 0.94851 1.01013 1.23484 0.98932 1.00878 0.92759 0.92408 0.89856 0.87862 0.90278 0.93803 0.89555 0.89023 0.97050 0.92929 0.94172 0.81170 0.80618 0.82841 0.88784 0.89596 0.85254 0.82980 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.45 9.45 127.77 1.21 2.66 16 2 N -0.59 -17.74 2.83 -846.77 -2.40 -20.14 16 3 C 0.13 5.21 5.40 86.38 0.47 5.68 16 4 C 0.13 5.71 4.57 45.09 0.21 5.91 16 5 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 6 C -0.12 -4.30 6.68 31.25 0.21 -4.09 16 7 C 0.15 7.11 7.65 86.44 0.66 7.77 16 8 N -0.63 -33.69 3.58 -690.82 -2.48 -36.17 16 9 C -0.23 -13.80 10.51 84.03 0.88 -12.92 16 10 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 12 N -0.95 -58.19 11.32 21.65 0.25 -57.95 16 13 Si 0.97 47.67 29.55 68.60 2.03 49.69 16 14 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 17 C 0.54 16.96 5.76 87.66 0.50 17.46 16 18 O -0.59 -24.67 16.27 -3.04 -0.05 -24.72 16 19 C -0.14 -2.80 1.27 -53.67 -0.07 -2.87 16 20 C -0.01 -0.15 4.57 -19.87 -0.09 -0.25 16 21 C -0.11 -1.06 9.36 22.27 0.21 -0.85 16 22 C -0.07 -0.56 10.04 22.26 0.22 -0.34 16 23 C -0.15 -2.11 10.03 22.31 0.22 -1.89 16 24 C 0.08 1.70 7.30 22.38 0.16 1.86 16 25 F -0.16 -4.14 17.27 44.97 0.78 -3.36 16 26 C -0.17 -4.06 9.30 22.31 0.21 -3.86 16 27 C -0.14 -2.28 9.73 30.62 0.30 -1.98 16 28 C -0.12 -1.43 8.38 30.62 0.26 -1.18 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.64 5.62 -2.38 -0.01 1.62 16 31 H 0.10 1.43 5.74 -2.39 -0.01 1.42 16 32 H 0.08 3.11 8.09 -2.39 -0.02 3.09 16 33 H 0.04 1.98 7.39 -2.39 -0.02 1.96 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.09 3.00 6.71 -2.39 -0.02 2.99 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 2.81 6.97 -2.39 -0.02 2.79 16 38 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.17 0.31 5.95 -2.91 -0.02 0.29 16 40 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.09 2.93 7.34 -2.91 -0.02 2.91 16 43 H 0.09 1.86 8.00 -2.39 -0.02 1.84 16 44 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.15 0.45 6.10 -2.39 -0.01 0.44 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -81.17 376.64 5.15 -76.03 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.99 Total: 8.59 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 6.03 Total: 8.02 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.63 Total: -114.25 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.36 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.69 kcal Total: -81.17 5.15 -76.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565827357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.384 kcal (2) G-P(sol) polarization free energy of solvation -81.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds