Wall clock time and date at job start Tue Mar 31 2020 16:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46507 * 119.99701 * 2 1 4 4 C 1.52992 * 109.47232 * 272.64269 * 3 2 1 5 5 H 1.09000 * 112.96743 * 294.39314 * 4 3 2 6 6 C 1.53944 * 113.77307 * 66.07682 * 4 3 2 7 7 C 1.53939 * 86.29357 * 137.90672 * 6 4 3 8 8 N 1.47577 * 113.76816 * 162.56991 * 4 3 2 9 9 C 1.36942 * 134.49546 * 41.05976 * 8 4 3 10 10 H 1.08002 * 119.99327 * 4.55368 * 9 8 4 11 11 C 1.38812 * 120.00238 * 184.55971 * 9 8 4 12 12 N 1.31620 * 119.99892 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99767 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47141 * 89.99688 * 13 11 9 15 15 H 1.48503 * 109.46843 * 209.99694 * 13 11 9 16 16 H 1.48502 * 109.47245 * 329.99482 * 13 11 9 17 17 C 1.34773 * 120.00216 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00063 * 175.71647 * 17 2 1 19 19 C 1.50703 * 120.00049 * 355.71963 * 17 2 1 20 20 C 1.50700 * 115.54967 * 45.03733 * 19 17 2 21 21 C 1.38222 * 120.00880 * 238.29526 * 20 19 17 22 22 C 1.38224 * 120.01914 * 179.97438 * 21 20 19 23 23 C 1.38259 * 120.05422 * 359.97438 * 22 21 20 24 24 C 1.38175 * 120.02745 * 0.04320 * 23 22 21 25 25 C 1.38437 * 120.01334 * 58.01848 * 20 19 17 26 26 F 1.35102 * 120.02420 * 0.02562 * 25 20 19 27 27 C 1.52999 * 117.49688 * 259.33120 * 19 17 2 28 28 C 1.52996 * 60.00111 * 252.50940 * 27 19 17 29 29 H 1.09004 * 109.47139 * 94.81545 * 1 2 3 30 30 H 1.09003 * 109.46997 * 214.80994 * 1 2 3 31 31 H 1.08992 * 109.47303 * 334.81066 * 1 2 3 32 32 H 1.08998 * 109.46519 * 152.64237 * 3 2 1 33 33 H 1.08996 * 109.46658 * 32.64724 * 3 2 1 34 34 H 1.09000 * 113.73841 * 252.25732 * 6 4 3 35 35 H 1.09005 * 113.74131 * 23.44960 * 6 4 3 36 36 H 1.08995 * 113.77241 * 90.69586 * 7 6 4 37 37 H 1.08999 * 113.76969 * 221.98481 * 7 6 4 38 38 H 0.96994 * 119.99386 * 180.02562 * 12 11 9 39 39 H 1.07999 * 119.99002 * 359.95792 * 21 20 19 40 40 H 1.08005 * 119.96776 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.99011 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.01645 * 179.97438 * 24 23 22 43 43 H 1.09006 * 117.50066 * 359.97438 * 27 19 17 44 44 H 1.08995 * 117.50026 * 145.01669 * 27 19 17 45 45 H 1.09000 * 117.50288 * 252.51365 * 28 27 19 46 46 H 1.09007 * 117.52055 * 107.47670 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3949 1.7438 -1.4409 5 1 3.0396 1.0841 -2.0216 6 6 1.0839 2.1175 -2.1562 7 6 1.8519 3.3280 -2.7171 8 7 2.7461 3.1727 -1.5533 9 6 3.5707 4.0160 -0.8574 10 1 4.1924 3.6295 -0.0633 11 6 3.6074 5.3674 -1.1725 12 7 2.8500 5.8382 -2.1405 13 14 4.7317 6.5176 -0.2227 14 1 6.0559 6.5798 -0.8919 15 1 4.1321 7.8757 -0.1843 16 1 4.9007 6.0119 1.1633 17 6 2.1389 -1.1671 -0.0005 18 8 3.3492 -1.1685 -0.0790 19 6 1.3886 -2.4705 0.0963 20 6 0.1719 -2.5871 -0.7852 21 6 -1.0672 -2.8331 -0.2243 22 6 -2.1834 -2.9396 -1.0326 23 6 -2.0620 -2.7997 -2.4027 24 6 -0.8243 -2.5541 -2.9657 25 6 0.2939 -2.4422 -2.1566 26 9 1.5038 -2.1968 -2.7054 27 6 1.3404 -3.1581 1.4623 28 6 2.2065 -3.7398 0.3432 29 1 -0.3633 -0.0863 -1.0241 30 1 -0.3633 -0.8438 0.5867 31 1 -0.3633 0.9299 0.4373 32 1 3.1696 1.1271 0.4723 33 1 1.6297 2.0160 0.5544 34 1 0.7796 1.3996 -2.9178 35 1 0.2744 2.3854 -1.4771 36 1 2.3380 3.1353 -3.6734 37 1 1.2771 4.2541 -2.7111 38 1 2.8759 6.7824 -2.3609 39 1 -1.1632 -2.9424 0.8459 40 1 -3.1512 -3.1313 -0.5933 41 1 -2.9349 -2.8826 -3.0333 42 1 -0.7296 -2.4453 -4.0360 43 1 1.8518 -2.6679 2.2908 44 1 0.4285 -3.6948 1.7237 45 1 1.8643 -4.6593 -0.1318 46 1 3.2873 -3.6322 0.4350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565829759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:53 Heat of formation + Delta-G solvation = 22.758632 kcal Electronic energy + Delta-G solvation = -29713.250271 eV Core-core repulsion = 25712.893604 eV Total energy + Delta-G solvation = -4000.356667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.86076 -41.76771 -40.08481 -39.44960 -37.41340 -36.49825 -34.25561 -31.84107 -31.34042 -30.12795 -29.90290 -27.69002 -25.80219 -25.33223 -24.23832 -23.88077 -22.87143 -22.47478 -20.98961 -19.96788 -18.95736 -18.59782 -17.89655 -17.45571 -17.25093 -16.96789 -16.67600 -16.55002 -16.23880 -15.90286 -15.56507 -15.31375 -15.02375 -14.98608 -14.29706 -14.14515 -14.02479 -13.95678 -13.75815 -13.59179 -13.37265 -13.03345 -12.89896 -12.73908 -12.58465 -12.52531 -12.42033 -12.32425 -12.12766 -11.83210 -11.66384 -11.61637 -11.54154 -11.34970 -10.92405 -10.87248 -9.82777 -9.67244 -9.50869 -8.94487 -7.91581 -5.27306 0.20514 0.30165 1.41525 1.42499 1.45259 1.53453 1.89235 2.46022 2.57240 2.80398 3.26226 3.34296 3.38745 3.42437 3.48899 3.76152 3.81983 3.85665 4.03764 4.11179 4.22105 4.23812 4.31125 4.42975 4.45510 4.49183 4.56940 4.63472 4.67246 4.71334 4.82051 4.88939 4.89741 4.90498 4.99148 5.01553 5.13554 5.18512 5.19124 5.28800 5.39945 5.45846 5.52459 5.54117 5.65497 5.92265 6.00354 6.37192 6.90074 7.10541 7.57796 8.53997 9.24159 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.003498 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.638405 B = 8003.700224 C = 8746.376746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.596 5.596 3 C 0.135 3.865 4 C 0.132 3.868 5 H 0.015 0.985 6 C -0.117 4.117 7 C 0.149 3.851 8 N -0.626 5.626 9 C -0.236 4.236 10 H 0.075 0.925 11 C -0.061 4.061 12 N -0.950 5.950 13 Si 0.977 3.023 14 H -0.291 1.291 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.543 3.457 18 O -0.588 6.588 19 C -0.139 4.139 20 C -0.084 4.084 21 C -0.083 4.083 22 C -0.114 4.114 23 C -0.085 4.085 24 C -0.162 4.162 25 C 0.071 3.929 26 F -0.163 7.163 27 C -0.113 4.113 28 C -0.143 4.143 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.006 0.994 37 H 0.056 0.944 38 H 0.250 0.750 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.136 0.864 43 H 0.100 0.900 44 H 0.150 0.850 45 H 0.122 0.878 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.007 -23.530 5.981 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.011 3.989 4 C 0.025 3.975 5 H 0.033 0.967 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.352 5.352 9 C -0.364 4.364 10 H 0.092 0.908 11 C -0.254 4.254 12 N -0.599 5.599 13 Si 0.805 3.195 14 H -0.218 1.218 15 H -0.213 1.213 16 H -0.193 1.193 17 C 0.332 3.668 18 O -0.468 6.468 19 C -0.142 4.142 20 C -0.085 4.085 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.103 4.103 24 C -0.180 4.180 25 C 0.052 3.948 26 F -0.142 7.142 27 C -0.150 4.150 28 C -0.180 4.180 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.183 0.817 40 H 0.185 0.815 41 H 0.178 0.822 42 H 0.154 0.846 43 H 0.118 0.882 44 H 0.168 0.832 45 H 0.140 0.860 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.210 -23.190 6.011 29.497 hybrid contribution 1.990 1.302 -0.630 2.460 sum -15.220 -21.887 5.381 27.196 Atomic orbital electron populations 1.22324 0.77095 1.04788 1.02430 1.47698 1.08421 1.04550 1.71984 1.21368 0.96554 0.84424 0.96600 1.22503 0.94069 0.85766 0.95151 0.96716 1.23451 0.95867 0.96954 0.99271 1.22235 0.89978 0.96785 0.88633 1.46412 1.51644 1.04585 1.32592 1.19343 1.16338 0.88881 1.11861 0.90751 1.25585 1.01788 0.97981 1.00059 1.70003 1.43485 1.13221 1.33164 0.85105 0.77786 0.78126 0.78471 1.21807 1.21326 1.19261 1.20073 0.86674 0.85231 0.74802 1.90669 1.16502 1.87716 1.51930 1.19907 0.98678 0.91882 1.03740 1.18871 0.94491 1.04874 0.90271 1.21263 0.89404 0.97269 1.02091 1.21607 0.99848 0.98673 0.93048 1.21422 0.96310 0.96285 0.96303 1.21364 0.92231 1.03693 1.00742 1.18102 0.80730 1.03805 0.92200 1.91491 1.44315 1.92026 1.86370 1.23297 1.03430 0.99601 0.88653 1.23090 0.98375 0.94396 1.02155 0.92800 0.88027 0.89869 0.93287 0.89313 0.91371 0.88870 0.97601 0.92522 0.94136 0.81718 0.81471 0.82232 0.84636 0.88186 0.83228 0.86015 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 7.91 127.77 1.01 2.67 16 2 N -0.60 -19.09 2.83 -846.76 -2.40 -21.49 16 3 C 0.13 5.42 5.39 86.38 0.47 5.89 16 4 C 0.13 6.13 4.58 45.09 0.21 6.34 16 5 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 6 C -0.12 -4.71 6.96 31.25 0.22 -4.49 16 7 C 0.15 7.64 7.63 86.48 0.66 8.30 16 8 N -0.63 -34.58 3.57 -694.25 -2.48 -37.06 16 9 C -0.24 -14.04 10.51 84.03 0.88 -13.16 16 10 H 0.07 4.34 7.83 -2.91 -0.02 4.32 16 11 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 12 N -0.95 -58.92 11.30 21.65 0.24 -58.67 16 13 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 14 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 C 0.54 18.54 6.45 87.66 0.57 19.11 16 18 O -0.59 -26.14 15.89 -3.03 -0.05 -26.18 16 19 C -0.14 -3.22 1.26 -53.67 -0.07 -3.29 16 20 C -0.08 -1.59 2.88 -19.82 -0.06 -1.65 16 21 C -0.08 -0.84 7.40 22.26 0.16 -0.67 16 22 C -0.11 -0.84 10.04 22.27 0.22 -0.61 16 23 C -0.09 -0.88 10.04 22.26 0.22 -0.65 16 24 C -0.16 -2.84 10.03 22.31 0.22 -2.61 16 25 C 0.07 1.68 6.55 22.37 0.15 1.83 16 26 F -0.16 -5.45 16.25 44.97 0.73 -4.72 16 27 C -0.11 -1.69 9.46 30.59 0.29 -1.40 16 28 C -0.14 -2.98 9.74 30.59 0.30 -2.68 16 29 H 0.05 1.22 7.14 -2.38 -0.02 1.20 16 30 H 0.10 1.61 4.84 -2.39 -0.01 1.60 16 31 H 0.08 1.68 7.86 -2.39 -0.02 1.66 16 32 H 0.05 2.23 7.41 -2.39 -0.02 2.21 16 33 H 0.09 3.43 7.90 -2.39 -0.02 3.41 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 3.35 7.85 -2.38 -0.02 3.33 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.06 3.13 6.96 -2.39 -0.02 3.12 16 38 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.17 0.65 6.62 -2.91 -0.02 0.63 16 40 H 0.17 0.10 8.06 -2.91 -0.02 0.07 16 41 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.15 0.96 6.75 -2.39 -0.02 0.94 16 45 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.09 2.24 7.71 -2.38 -0.02 2.22 16 Total: -1.00 -82.93 375.14 4.99 -77.94 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.99 Total: 10.82 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.92 Total: 9.77 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -4.63 Total: -117.22 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.18 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.73 Total: -4.72 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -82.93 4.99 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565829759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.703 kcal (2) G-P(sol) polarization free energy of solvation -82.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds