Wall clock time and date at job start Tue Mar 31 2020 16:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99926 * 2 1 4 4 C 1.52997 * 109.47088 * 66.04928 * 3 2 1 5 5 C 1.53008 * 109.46860 * 180.02562 * 4 3 2 6 6 F 1.39896 * 109.46770 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99955 * 236.04641 * 2 1 3 8 8 C 1.52998 * 109.46992 * 293.95149 * 7 2 1 9 9 H 1.09005 * 109.49921 * 54.93843 * 8 7 2 10 10 C 1.53044 * 109.49629 * 174.99980 * 8 7 2 11 11 C 1.53045 * 109.53935 * 181.31768 * 10 8 7 12 12 C 1.53192 * 109.31022 * 298.63925 * 11 10 8 13 13 N 1.46920 * 108.77858 * 54.63212 * 12 11 10 14 14 C 1.34779 * 120.62938 * 126.37145 * 13 12 11 15 15 O 1.21282 * 119.99922 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00037 * 359.97438 * 14 13 12 17 17 S 1.81000 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47367 * 59.99618 * 22 20 18 24 24 H 1.48498 * 109.47311 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46831 * 299.99623 * 22 20 18 26 26 C 1.46930 * 118.74035 * 306.64020 * 13 12 11 27 27 H 1.09003 * 109.47033 * 183.95200 * 1 2 3 28 28 H 1.09002 * 109.47179 * 303.95561 * 1 2 3 29 29 H 1.08994 * 109.47107 * 63.95481 * 1 2 3 30 30 H 1.09004 * 109.47071 * 186.04908 * 3 2 1 31 31 H 1.09000 * 109.47052 * 306.04641 * 3 2 1 32 32 H 1.09000 * 109.46816 * 299.99579 * 4 3 2 33 33 H 1.09000 * 109.47408 * 59.99932 * 4 3 2 34 34 H 1.09000 * 109.46732 * 299.99226 * 5 4 3 35 35 H 1.08993 * 109.47732 * 59.99274 * 5 4 3 36 36 H 1.09001 * 109.47079 * 173.95229 * 7 2 1 37 37 H 1.09000 * 109.47289 * 53.95615 * 7 2 1 38 38 H 1.08997 * 109.46097 * 61.30152 * 10 8 7 39 39 H 1.08998 * 109.46252 * 301.33716 * 10 8 7 40 40 H 1.08993 * 109.50030 * 178.68338 * 11 10 8 41 41 H 1.08998 * 109.49800 * 58.58369 * 11 10 8 42 42 H 1.09001 * 109.58582 * 294.84479 * 12 11 10 43 43 H 1.09004 * 109.58689 * 174.42074 * 12 11 10 44 44 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 45 45 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 46 46 H 0.96996 * 120.00393 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.58572 * 173.14546 * 26 13 12 48 48 H 1.09000 * 109.58689 * 293.57323 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1793 3.4861 1.3180 6 9 1.8460 4.1135 2.5231 7 6 1.9954 -0.7660 -1.1376 8 6 1.6315 -2.2426 -0.9703 9 1 0.5533 -2.3393 -0.8421 10 6 2.0698 -3.0207 -2.2131 11 6 1.6768 -4.4920 -2.0610 12 6 2.3921 -5.0840 -0.8425 13 7 2.0910 -4.2543 0.3320 14 6 1.5897 -4.8083 1.4538 15 8 1.3448 -4.1126 2.4165 16 6 1.3323 -6.2921 1.5113 17 16 0.6639 -6.7258 3.1365 18 6 0.4638 -8.4644 2.9309 19 1 0.7342 -8.9322 1.9958 20 6 -0.0421 -9.2324 3.9704 21 7 -0.3721 -8.6621 5.1100 22 14 -0.2536 -11.0756 3.7528 23 1 1.0642 -11.6937 3.4584 24 1 -0.8080 -11.6610 4.9998 25 1 -1.1857 -11.3373 2.6267 26 6 2.3411 -2.8083 0.2585 27 1 -0.3633 -1.0252 0.0708 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9274 -0.8309 32 1 0.5472 2.0845 1.4265 33 1 2.0658 1.5015 2.1492 34 1 3.2635 3.4594 1.2096 35 1 1.7447 4.0417 0.4871 36 1 3.0797 -0.6611 -1.1756 37 1 1.5611 -0.3872 -2.0628 38 1 3.1511 -2.9437 -2.3272 39 1 1.5813 -2.6036 -3.0938 40 1 1.9683 -5.0409 -2.9563 41 1 0.5984 -4.5680 -1.9220 42 1 3.4678 -5.0916 -1.0184 43 1 2.0406 -6.1014 -0.6710 44 1 2.2663 -6.8295 1.3470 45 1 0.6143 -6.5666 0.7385 46 1 -0.7253 -9.1989 5.8365 47 1 1.9558 -2.3248 1.1562 48 1 3.4126 -2.6266 0.1742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566736594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:27 Heat of formation + Delta-G solvation = -96.956614 kcal Electronic energy + Delta-G solvation = -26454.109147 eV Core-core repulsion = 22584.005189 eV Total energy + Delta-G solvation = -3870.103958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -47.89405 -40.05476 -38.45121 -36.90995 -33.93096 -32.47026 -32.39690 -31.30116 -29.26477 -27.43897 -26.34517 -25.54379 -24.92292 -23.66567 -21.97175 -21.13441 -20.34623 -18.97292 -17.61664 -16.81526 -16.65206 -16.45771 -16.02828 -15.84594 -15.31993 -15.21787 -14.79432 -14.77479 -14.67871 -14.40987 -13.94008 -13.81757 -13.63165 -13.27596 -13.15125 -12.77742 -12.59614 -12.39257 -12.28416 -12.09029 -11.81997 -11.77259 -11.58077 -11.39590 -11.19913 -11.02671 -11.01869 -10.91571 -10.89680 -10.74879 -10.68134 -10.52532 -9.78175 -9.25094 -9.03721 -8.63745 -8.39623 -8.18844 -6.46801 -6.18903 -3.89284 3.01164 3.14519 3.24745 3.28000 3.30954 3.44518 3.65509 4.22728 4.32513 4.42500 4.50422 4.55225 4.63710 4.65892 4.72138 4.84398 4.85327 4.99426 5.06384 5.13420 5.15872 5.19288 5.23469 5.28639 5.32885 5.41409 5.42737 5.45548 5.51156 5.62472 5.64339 5.70697 5.75711 5.78358 5.85038 5.88788 5.93763 5.96355 6.15618 6.20674 6.24946 6.71610 6.74397 6.78744 7.61238 7.67497 8.37344 8.66463 9.26000 10.88450 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.002362 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.310720 B =11849.449540 C =13334.350509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.539 5.539 3 C 0.059 3.941 4 C -0.154 4.154 5 C 0.064 3.936 6 F -0.218 7.218 7 C 0.065 3.935 8 C -0.100 4.100 9 H 0.077 0.923 10 C -0.112 4.112 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.621 5.621 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.128 3.872 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.269 0.731 47 H 0.103 0.897 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 19.308 -18.597 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.262 5.262 3 C -0.069 4.069 4 C -0.192 4.192 5 C 0.008 3.992 6 F -0.200 7.200 7 C -0.064 4.064 8 C -0.120 4.120 9 H 0.095 0.905 10 C -0.151 4.151 11 C -0.173 4.173 12 C -0.017 4.017 13 N -0.357 5.357 14 C 0.322 3.678 15 O -0.389 6.389 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.005 3.995 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.121 0.879 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.262 20.094 -16.498 26.743 hybrid contribution -0.157 -1.638 -2.109 2.675 sum 6.105 18.456 -18.607 26.910 Atomic orbital electron populations 1.22510 0.87048 1.03039 1.00354 1.61893 1.08348 1.12773 1.43226 1.21959 1.00356 0.88592 0.95963 1.22208 1.02793 0.94573 0.99619 1.21922 1.01155 0.93001 0.83095 1.92779 1.94396 1.84000 1.48777 1.22124 1.00163 0.92987 0.91087 1.21505 1.01519 0.93326 0.95665 0.90460 1.21532 1.01248 0.95163 0.97119 1.21906 1.01349 0.95975 0.98033 1.21701 0.99588 0.95372 0.85018 1.48134 1.65884 1.07951 1.13776 1.20297 0.75844 0.89895 0.81789 1.90695 1.50053 1.63268 1.34897 1.23551 1.04646 0.94184 1.07686 1.85411 1.81889 1.07741 1.08397 1.22821 1.50017 0.92642 1.02862 0.91047 1.24986 0.94727 0.99392 0.94472 1.70006 1.40554 1.36266 1.03454 0.86238 0.78610 0.83035 0.77693 1.19945 1.20823 1.19970 1.21356 0.98818 0.79954 0.99353 0.90669 0.90999 0.95782 0.90450 0.94746 0.90563 0.89446 0.90751 0.91109 0.90551 0.94558 0.91721 0.91971 0.90744 0.91350 0.91660 0.89345 0.89407 0.89431 0.92146 0.87902 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.13 60.06 0.55 0.71 16 2 N -0.54 -4.80 4.33 -242.92 -1.05 -5.85 16 3 C 0.06 0.41 4.96 -3.82 -0.02 0.39 16 4 C -0.15 -1.15 5.60 -26.73 -0.15 -1.30 16 5 C 0.06 0.41 7.55 37.16 0.28 0.69 16 6 F -0.22 -2.19 17.36 2.25 0.04 -2.16 16 7 C 0.06 0.51 4.35 -3.82 -0.02 0.49 16 8 C -0.10 -0.96 2.24 -90.72 -0.20 -1.16 16 9 H 0.08 0.86 6.34 -51.93 -0.33 0.53 16 10 C -0.11 -0.88 5.17 -26.69 -0.14 -1.02 16 11 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 12 C 0.11 1.18 6.34 -3.71 -0.02 1.15 16 13 N -0.62 -9.06 2.98 -173.03 -0.52 -9.58 16 14 C 0.53 10.45 7.72 -10.99 -0.08 10.36 16 15 O -0.52 -12.10 15.28 5.56 0.08 -12.02 16 16 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.13 1.62 5.51 -3.93 -0.02 1.60 16 27 H 0.07 0.78 6.37 -51.93 -0.33 0.45 16 28 H 0.07 0.64 6.30 -51.93 -0.33 0.31 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 31 H 0.03 0.21 8.12 -51.93 -0.42 -0.22 16 32 H 0.08 0.61 6.47 -51.93 -0.34 0.27 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 37 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.01 5.93 -51.93 -0.31 0.71 16 44 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 45 H 0.09 1.68 7.69 -51.91 -0.40 1.28 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.10 1.61 6.78 -51.93 -0.35 1.26 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -34.58 392.22 -9.90 -44.47 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.23 Total: -2.31 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 0.37 Total: -5.41 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.83 Total: -41.07 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.58 -9.90 -44.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566736594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.484 kcal (2) G-P(sol) polarization free energy of solvation -34.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds