Wall clock time and date at job start Tue Mar 31 2020 16:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99926 * 2 1 4 4 C 1.52997 * 109.47088 * 66.04928 * 3 2 1 5 5 C 1.53008 * 109.46860 * 180.02562 * 4 3 2 6 6 F 1.39896 * 109.46770 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99955 * 236.04641 * 2 1 3 8 8 C 1.52998 * 109.46992 * 293.95149 * 7 2 1 9 9 H 1.09005 * 109.49921 * 54.93843 * 8 7 2 10 10 C 1.53044 * 109.49629 * 174.99980 * 8 7 2 11 11 C 1.53045 * 109.53935 * 181.31768 * 10 8 7 12 12 C 1.53192 * 109.31022 * 298.63925 * 11 10 8 13 13 N 1.46920 * 108.77858 * 54.63212 * 12 11 10 14 14 C 1.34779 * 120.62938 * 126.37145 * 13 12 11 15 15 O 1.21282 * 119.99922 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00037 * 359.97438 * 14 13 12 17 17 S 1.81000 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47367 * 59.99618 * 22 20 18 24 24 H 1.48498 * 109.47311 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46831 * 299.99623 * 22 20 18 26 26 C 1.46930 * 118.74035 * 306.64020 * 13 12 11 27 27 H 1.09003 * 109.47033 * 183.95200 * 1 2 3 28 28 H 1.09002 * 109.47179 * 303.95561 * 1 2 3 29 29 H 1.08994 * 109.47107 * 63.95481 * 1 2 3 30 30 H 1.09004 * 109.47071 * 186.04908 * 3 2 1 31 31 H 1.09000 * 109.47052 * 306.04641 * 3 2 1 32 32 H 1.09000 * 109.46816 * 299.99579 * 4 3 2 33 33 H 1.09000 * 109.47408 * 59.99932 * 4 3 2 34 34 H 1.09000 * 109.46732 * 299.99226 * 5 4 3 35 35 H 1.08993 * 109.47732 * 59.99274 * 5 4 3 36 36 H 1.09001 * 109.47079 * 173.95229 * 7 2 1 37 37 H 1.09000 * 109.47289 * 53.95615 * 7 2 1 38 38 H 1.08997 * 109.46097 * 61.30152 * 10 8 7 39 39 H 1.08998 * 109.46252 * 301.33716 * 10 8 7 40 40 H 1.08993 * 109.50030 * 178.68338 * 11 10 8 41 41 H 1.08998 * 109.49800 * 58.58369 * 11 10 8 42 42 H 1.09001 * 109.58582 * 294.84479 * 12 11 10 43 43 H 1.09004 * 109.58689 * 174.42074 * 12 11 10 44 44 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 45 45 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 46 46 H 0.96996 * 120.00393 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.58572 * 173.14546 * 26 13 12 48 48 H 1.09000 * 109.58689 * 293.57323 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1793 3.4861 1.3180 6 9 1.8460 4.1135 2.5231 7 6 1.9954 -0.7660 -1.1376 8 6 1.6315 -2.2426 -0.9703 9 1 0.5533 -2.3393 -0.8421 10 6 2.0698 -3.0207 -2.2131 11 6 1.6768 -4.4920 -2.0610 12 6 2.3921 -5.0840 -0.8425 13 7 2.0910 -4.2543 0.3320 14 6 1.5897 -4.8083 1.4538 15 8 1.3448 -4.1126 2.4165 16 6 1.3323 -6.2921 1.5113 17 16 0.6639 -6.7258 3.1365 18 6 0.4638 -8.4644 2.9309 19 1 0.7342 -8.9322 1.9958 20 6 -0.0421 -9.2324 3.9704 21 7 -0.3721 -8.6621 5.1100 22 14 -0.2536 -11.0756 3.7528 23 1 1.0642 -11.6937 3.4584 24 1 -0.8080 -11.6610 4.9998 25 1 -1.1857 -11.3373 2.6267 26 6 2.3411 -2.8083 0.2585 27 1 -0.3633 -1.0252 0.0708 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9274 -0.8309 32 1 0.5472 2.0845 1.4265 33 1 2.0658 1.5015 2.1492 34 1 3.2635 3.4594 1.2096 35 1 1.7447 4.0417 0.4871 36 1 3.0797 -0.6611 -1.1756 37 1 1.5611 -0.3872 -2.0628 38 1 3.1511 -2.9437 -2.3272 39 1 1.5813 -2.6036 -3.0938 40 1 1.9683 -5.0409 -2.9563 41 1 0.5984 -4.5680 -1.9220 42 1 3.4678 -5.0916 -1.0184 43 1 2.0406 -6.1014 -0.6710 44 1 2.2663 -6.8295 1.3470 45 1 0.6143 -6.5666 0.7385 46 1 -0.7253 -9.1989 5.8365 47 1 1.9558 -2.3248 1.1562 48 1 3.4126 -2.6266 0.1742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566736594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:26 Heat of formation + Delta-G solvation = -119.169078 kcal Electronic energy + Delta-G solvation = -26455.072352 eV Core-core repulsion = 22584.005189 eV Total energy + Delta-G solvation = -3871.067163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.56832 -41.22444 -39.39180 -37.93958 -34.82798 -34.58754 -33.31918 -32.19202 -30.72670 -28.15081 -27.70636 -26.99959 -26.06707 -24.39805 -22.72775 -21.79707 -21.26653 -20.31306 -19.44138 -18.11715 -17.38612 -17.20902 -16.96352 -16.87698 -16.61081 -16.55721 -16.17297 -15.79259 -15.63669 -15.36205 -15.13341 -14.82358 -14.53026 -14.42451 -14.34840 -14.02328 -13.86968 -13.40449 -13.18197 -13.12558 -12.94370 -12.88239 -12.86472 -12.62550 -12.41450 -12.20654 -12.03260 -11.93171 -11.76095 -11.72329 -11.49021 -11.43919 -11.29216 -11.13041 -10.80725 -10.26442 -9.61966 -9.23250 -8.68125 -8.34333 -6.13372 1.25793 1.43944 1.46010 1.55794 1.60512 2.15465 2.27762 2.84467 2.99399 3.26351 3.68476 3.73127 3.82695 3.87031 3.91615 3.99305 4.06951 4.12401 4.18719 4.24018 4.27651 4.36172 4.41763 4.44702 4.46295 4.53588 4.63651 4.67037 4.69891 4.75877 4.77866 4.82602 4.96373 4.96829 5.03616 5.07299 5.13410 5.17924 5.27904 5.29623 5.40872 5.48604 5.64405 6.08855 6.16755 6.19390 6.35442 7.06206 7.19075 8.74789 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.002362 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.310720 B =11849.449540 C =13334.350509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.064 3.936 4 C -0.151 4.151 5 C 0.061 3.939 6 F -0.241 7.241 7 C 0.070 3.930 8 C -0.093 4.093 9 H 0.055 0.945 10 C -0.107 4.107 11 C -0.130 4.130 12 C 0.096 3.904 13 N -0.608 5.608 14 C 0.529 3.471 15 O -0.568 6.568 16 C -0.121 4.121 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.127 3.873 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.271 0.729 47 H 0.065 0.935 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 18.959 -22.497 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.189 4.189 5 C 0.006 3.994 6 F -0.223 7.223 7 C -0.058 4.058 8 C -0.112 4.112 9 H 0.074 0.926 10 C -0.144 4.144 11 C -0.168 4.168 12 C -0.026 4.026 13 N -0.342 5.342 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.204 1.204 25 H -0.186 1.186 26 C 0.006 3.994 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.776 19.762 -20.468 29.495 hybrid contribution -0.562 -1.439 -0.978 1.829 sum 7.214 18.323 -21.446 29.115 Atomic orbital electron populations 1.22393 0.87642 1.01617 1.00804 1.61857 1.08100 1.14335 1.44352 1.21963 1.01158 0.87498 0.95737 1.22149 1.01989 0.95319 0.99466 1.22134 1.02508 0.92160 0.82624 1.92732 1.94661 1.84391 1.50471 1.22111 1.01069 0.91365 0.91258 1.21435 0.99793 0.94965 0.95044 0.92616 1.21529 1.02526 0.93941 0.96449 1.21902 1.00096 0.97041 0.97750 1.22075 1.01536 0.94690 0.84285 1.48179 1.63532 1.09284 1.13199 1.20146 0.76302 0.89191 0.82686 1.90677 1.52828 1.63978 1.37182 1.23353 1.05233 0.95522 1.03109 1.85625 1.83177 1.09111 1.14855 1.23155 1.50148 0.92483 1.03542 0.89880 1.26162 0.93964 1.05254 0.93869 1.70183 1.41579 1.38513 1.04569 0.84989 0.79225 0.75659 0.78023 1.18531 1.20404 1.18566 1.21466 1.00031 0.78391 0.99560 0.92866 0.91713 0.94282 0.89045 0.93041 0.91654 0.91876 0.88837 0.88779 0.89025 0.92859 0.89900 0.90012 0.87869 0.92919 0.89098 0.89829 0.87588 0.87738 0.91986 0.91596 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 127.69 1.17 1.59 16 2 N -0.56 -9.57 4.33 -922.46 -3.99 -13.56 16 3 C 0.06 0.76 4.96 86.30 0.43 1.19 16 4 C -0.15 -2.24 5.60 30.60 0.17 -2.06 16 5 C 0.06 0.71 7.55 71.98 0.54 1.26 16 6 F -0.24 -4.84 17.36 44.97 0.78 -4.06 16 7 C 0.07 0.92 4.35 86.30 0.38 1.30 16 8 C -0.09 -1.61 2.24 -10.86 -0.02 -1.64 16 9 H 0.06 1.23 6.34 -2.38 -0.02 1.22 16 10 C -0.11 -1.26 5.17 30.62 0.16 -1.10 16 11 C -0.13 -1.85 6.08 30.67 0.19 -1.67 16 12 C 0.10 1.87 6.34 86.36 0.55 2.41 16 13 N -0.61 -17.35 2.98 -819.72 -2.44 -19.79 16 14 C 0.53 21.26 7.72 87.66 0.68 21.93 16 15 O -0.57 -28.32 15.28 -3.04 -0.05 -28.37 16 16 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 17 S -0.15 -8.90 20.57 -56.49 -1.16 -10.06 16 18 C -0.55 -31.67 9.50 67.95 0.65 -31.03 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.70 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.98 13.22 21.65 0.29 -56.69 16 22 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 26 C 0.13 3.16 5.51 86.22 0.48 3.63 16 27 H 0.05 1.18 6.37 -2.39 -0.02 1.17 16 28 H 0.06 1.23 6.30 -2.39 -0.02 1.22 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.84 7.93 -2.38 -0.02 0.82 16 31 H 0.05 0.46 8.12 -2.39 -0.02 0.44 16 32 H 0.06 1.09 6.47 -2.39 -0.02 1.07 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.96 7.93 -2.39 -0.02 0.94 16 37 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.72 5.93 -2.38 -0.01 1.71 16 44 H 0.11 4.02 7.94 -2.39 -0.02 4.00 16 45 H 0.10 3.98 7.69 -2.40 -0.02 3.96 16 46 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 47 H 0.07 2.17 6.78 -2.39 -0.02 2.15 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -80.31 392.22 2.52 -77.79 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.93 Total: 16.51 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 6.14 Total: -7.75 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -6.15 Total: -90.04 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.06 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.16 Total: -10.06 kcal Total: -80.31 2.52 -77.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566736594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.379 kcal (2) G-P(sol) polarization free energy of solvation -80.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds