Wall clock time and date at job start Tue Mar 31 2020 16:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00130 * 2 1 4 4 C 1.53000 * 109.47365 * 293.95555 * 3 2 1 5 5 C 1.52989 * 109.47083 * 180.02562 * 4 3 2 6 6 F 1.39908 * 109.47297 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99859 * 123.95547 * 2 1 3 8 8 C 1.53005 * 109.46985 * 66.04496 * 7 2 1 9 9 H 1.09004 * 109.52446 * 305.07910 * 8 7 2 10 10 C 1.53046 * 109.49463 * 184.99809 * 8 7 2 11 11 C 1.53046 * 109.53579 * 178.68106 * 10 8 7 12 12 C 1.53193 * 109.31028 * 61.36644 * 11 10 8 13 13 N 1.46927 * 108.77663 * 305.36644 * 12 11 10 14 14 C 1.34778 * 120.62805 * 233.63128 * 13 12 11 15 15 O 1.21285 * 120.00278 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00102 * 359.97438 * 14 13 12 17 17 S 1.80995 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00163 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99733 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00499 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99710 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46927 * 90.00203 * 22 20 18 24 24 H 1.48498 * 109.47005 * 210.00076 * 22 20 18 25 25 H 1.48499 * 109.47287 * 330.00271 * 22 20 18 26 26 C 1.46919 * 118.74179 * 53.60344 * 13 12 11 27 27 H 1.09008 * 109.46797 * 296.04666 * 1 2 3 28 28 H 1.09001 * 109.47001 * 56.03999 * 1 2 3 29 29 H 1.08995 * 109.47279 * 176.04418 * 1 2 3 30 30 H 1.08997 * 109.46817 * 53.95782 * 3 2 1 31 31 H 1.08998 * 109.47170 * 173.95264 * 3 2 1 32 32 H 1.09001 * 109.46757 * 300.00360 * 4 3 2 33 33 H 1.09006 * 109.47014 * 59.99959 * 4 3 2 34 34 H 1.09001 * 109.47546 * 299.99788 * 5 4 3 35 35 H 1.08994 * 109.47667 * 60.00170 * 5 4 3 36 36 H 1.08997 * 109.47482 * 306.04366 * 7 2 1 37 37 H 1.09000 * 109.46946 * 186.04072 * 7 2 1 38 38 H 1.08993 * 109.45866 * 298.70281 * 10 8 7 39 39 H 1.09000 * 109.45949 * 58.66617 * 10 8 7 40 40 H 1.09001 * 109.49347 * 181.31682 * 11 10 8 41 41 H 1.08998 * 109.49687 * 301.41384 * 11 10 8 42 42 H 1.09000 * 109.58615 * 185.57833 * 12 11 10 43 43 H 1.08998 * 109.58446 * 65.14816 * 12 11 10 44 44 H 1.09000 * 109.46874 * 299.99970 * 16 14 13 45 45 H 1.08997 * 109.47596 * 59.99862 * 16 14 13 46 46 H 0.97002 * 120.00528 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.59216 * 186.60571 * 26 13 12 48 48 H 1.09006 * 109.58250 * 66.18466 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1804 3.4855 -1.3184 6 9 1.8471 4.1131 -2.5236 7 6 1.9954 -0.7660 1.1376 8 6 1.6314 -2.2427 0.9703 9 1 0.5533 -2.3398 0.8417 10 6 2.0698 -3.0208 2.2131 11 6 1.6766 -4.4920 2.0609 12 6 2.3919 -5.0841 0.8424 13 7 2.0909 -4.2544 -0.3321 14 6 1.5895 -4.8083 -1.4538 15 8 1.3446 -4.1126 -2.4167 16 6 1.3330 -6.2922 -1.5118 17 16 0.6657 -6.7261 -3.1373 18 6 0.4666 -8.4648 -2.9321 19 1 0.7367 -8.9326 -1.9970 20 6 -0.0384 -9.2330 -3.9721 21 7 -0.3691 -8.6626 -5.1113 22 14 -0.2488 -11.0764 -3.7548 23 1 -1.6039 -11.3600 -3.2176 24 1 -0.0854 -11.7513 -5.0674 25 1 0.7756 -11.5832 -2.8067 26 6 2.3461 -2.8093 -0.2605 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5612 1.9272 0.8309 31 1 3.0798 1.3444 0.1083 32 1 2.0658 1.5015 -2.1491 33 1 0.5472 2.0846 -1.4264 34 1 1.7465 4.0418 -0.4875 35 1 3.2646 3.4581 -1.2104 36 1 1.5612 -0.3873 2.0628 37 1 3.0797 -0.6612 1.1755 38 1 3.1510 -2.9437 2.3271 39 1 1.5813 -2.6037 3.0937 40 1 1.9682 -5.0410 2.9563 41 1 0.5982 -4.5679 1.9221 42 1 2.0403 -6.1015 0.6710 43 1 3.4676 -5.0917 1.0183 44 1 2.2674 -6.8290 -1.3479 45 1 0.6155 -6.5674 -0.7388 46 1 -0.7217 -9.1995 -5.8382 47 1 1.9644 -2.3256 -1.1596 48 1 3.4182 -2.6315 -0.1746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566736595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:37 Heat of formation + Delta-G solvation = -97.032872 kcal Electronic energy + Delta-G solvation = -26452.826424 eV Core-core repulsion = 22582.719159 eV Total energy + Delta-G solvation = -3870.107265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -47.89155 -40.04363 -38.44830 -36.90486 -33.92604 -32.47084 -32.39773 -31.28997 -29.26539 -27.43715 -26.34435 -25.54507 -24.91492 -23.66659 -21.97052 -21.13361 -20.34452 -18.97421 -17.61776 -16.81453 -16.65132 -16.45700 -16.02608 -15.84395 -15.32039 -15.21744 -14.79336 -14.77590 -14.67841 -14.40735 -13.94061 -13.81582 -13.63130 -13.27409 -13.15122 -12.77436 -12.59775 -12.39206 -12.28359 -12.08832 -11.82086 -11.77038 -11.58050 -11.39669 -11.19883 -11.04827 -11.00429 -10.91479 -10.89376 -10.74357 -10.68353 -10.52682 -9.77431 -9.25103 -9.04564 -8.63689 -8.39464 -8.18514 -6.46878 -6.19220 -3.89444 3.01300 3.14431 3.23510 3.28122 3.32002 3.44607 3.65574 4.22465 4.32557 4.42420 4.50660 4.55275 4.63422 4.66012 4.72261 4.84420 4.85387 4.99467 5.06406 5.13372 5.15695 5.19194 5.23503 5.28553 5.32895 5.41311 5.42832 5.45494 5.51125 5.62428 5.64351 5.70738 5.75709 5.78362 5.84894 5.88778 5.93769 5.96360 6.15628 6.20549 6.24841 6.71696 6.74544 6.78719 7.61412 7.67462 8.37373 8.66458 9.25868 10.88170 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.002362 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.514999 B =11850.036762 C =13334.999500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.539 5.539 3 C 0.059 3.941 4 C -0.154 4.154 5 C 0.064 3.936 6 F -0.218 7.218 7 C 0.065 3.935 8 C -0.100 4.100 9 H 0.077 0.923 10 C -0.113 4.113 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.622 5.622 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.128 3.872 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.268 0.732 47 H 0.103 0.897 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 19.308 18.608 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.069 4.069 4 C -0.192 4.192 5 C 0.008 3.992 6 F -0.200 7.200 7 C -0.064 4.064 8 C -0.120 4.120 9 H 0.096 0.904 10 C -0.151 4.151 11 C -0.173 4.173 12 C -0.017 4.017 13 N -0.358 5.358 14 C 0.322 3.678 15 O -0.389 6.389 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C 0.005 3.995 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.121 0.879 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.271 20.093 16.513 26.753 hybrid contribution -0.163 -1.635 2.100 2.667 sum 6.108 18.458 18.613 26.916 Atomic orbital electron populations 1.22511 0.87049 1.03038 1.00349 1.61892 1.08346 1.12768 1.43229 1.21957 1.00354 0.88596 0.95961 1.22205 1.02789 0.94578 0.99620 1.21921 1.01151 0.93003 0.83096 1.92782 1.94397 1.83993 1.48784 1.22126 1.00159 0.93011 0.91080 1.21583 1.01481 0.93293 0.95640 0.90439 1.21533 1.01244 0.95167 0.97122 1.21907 1.01348 0.95974 0.98025 1.21701 0.99585 0.95369 0.85019 1.48136 1.65822 1.08021 1.13781 1.20298 0.75860 0.89893 0.81781 1.90696 1.50059 1.63271 1.34891 1.23549 1.04657 0.94184 1.07673 1.85413 1.81943 1.07758 1.08360 1.22860 1.49944 0.92613 1.02850 0.90997 1.24990 0.94742 0.99406 0.94470 1.70018 1.40608 1.36176 1.03468 0.86180 0.78624 0.83025 0.77734 1.20298 1.20760 1.19710 1.21446 0.98736 0.79949 0.99344 0.95786 0.91002 0.90667 0.94750 0.90452 0.89453 0.90556 0.91111 0.90748 0.94570 0.90556 0.91725 0.91976 0.90749 0.91348 0.89344 0.91665 0.89408 0.89432 0.92205 0.87900 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.13 60.07 0.55 0.71 16 2 N -0.54 -4.80 4.34 -242.91 -1.05 -5.85 16 3 C 0.06 0.41 4.96 -3.82 -0.02 0.39 16 4 C -0.15 -1.15 5.60 -26.74 -0.15 -1.30 16 5 C 0.06 0.41 7.55 37.15 0.28 0.69 16 6 F -0.22 -2.20 17.36 2.25 0.04 -2.16 16 7 C 0.06 0.51 4.35 -3.82 -0.02 0.49 16 8 C -0.10 -0.96 2.26 -90.50 -0.20 -1.16 16 9 H 0.08 0.86 6.34 -51.93 -0.33 0.53 16 10 C -0.11 -0.88 5.17 -26.68 -0.14 -1.02 16 11 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 12 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 13 N -0.62 -9.06 2.97 -172.77 -0.51 -9.57 16 14 C 0.53 10.44 7.72 -10.99 -0.08 10.36 16 15 O -0.52 -12.10 15.28 5.55 0.08 -12.02 16 16 C -0.15 -3.11 4.50 36.00 0.16 -2.95 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.13 1.62 5.54 -3.72 -0.02 1.60 16 27 H 0.02 0.19 8.14 -51.92 -0.42 -0.24 16 28 H 0.07 0.64 6.30 -51.93 -0.33 0.31 16 29 H 0.07 0.78 6.37 -51.93 -0.33 0.45 16 30 H 0.03 0.21 8.12 -51.93 -0.42 -0.22 16 31 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.61 6.47 -51.93 -0.34 0.27 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 37 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.01 5.93 -51.93 -0.31 0.71 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 45 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.10 1.61 6.79 -51.93 -0.35 1.26 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -34.60 392.27 -9.90 -44.49 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.23 Total: -2.35 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 0.37 Total: -5.40 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.83 Total: -41.06 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.60 -9.90 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566736595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.540 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds