Wall clock time and date at job start Tue Mar 31 2020 16:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00130 * 2 1 4 4 C 1.53000 * 109.47365 * 293.95555 * 3 2 1 5 5 C 1.52989 * 109.47083 * 180.02562 * 4 3 2 6 6 F 1.39908 * 109.47297 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99859 * 123.95547 * 2 1 3 8 8 C 1.53005 * 109.46985 * 66.04496 * 7 2 1 9 9 H 1.09004 * 109.52446 * 305.07910 * 8 7 2 10 10 C 1.53046 * 109.49463 * 184.99809 * 8 7 2 11 11 C 1.53046 * 109.53579 * 178.68106 * 10 8 7 12 12 C 1.53193 * 109.31028 * 61.36644 * 11 10 8 13 13 N 1.46927 * 108.77663 * 305.36644 * 12 11 10 14 14 C 1.34778 * 120.62805 * 233.63128 * 13 12 11 15 15 O 1.21285 * 120.00278 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00102 * 359.97438 * 14 13 12 17 17 S 1.80995 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00163 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99733 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00499 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99710 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46927 * 90.00203 * 22 20 18 24 24 H 1.48498 * 109.47005 * 210.00076 * 22 20 18 25 25 H 1.48499 * 109.47287 * 330.00271 * 22 20 18 26 26 C 1.46919 * 118.74179 * 53.60344 * 13 12 11 27 27 H 1.09008 * 109.46797 * 296.04666 * 1 2 3 28 28 H 1.09001 * 109.47001 * 56.03999 * 1 2 3 29 29 H 1.08995 * 109.47279 * 176.04418 * 1 2 3 30 30 H 1.08997 * 109.46817 * 53.95782 * 3 2 1 31 31 H 1.08998 * 109.47170 * 173.95264 * 3 2 1 32 32 H 1.09001 * 109.46757 * 300.00360 * 4 3 2 33 33 H 1.09006 * 109.47014 * 59.99959 * 4 3 2 34 34 H 1.09001 * 109.47546 * 299.99788 * 5 4 3 35 35 H 1.08994 * 109.47667 * 60.00170 * 5 4 3 36 36 H 1.08997 * 109.47482 * 306.04366 * 7 2 1 37 37 H 1.09000 * 109.46946 * 186.04072 * 7 2 1 38 38 H 1.08993 * 109.45866 * 298.70281 * 10 8 7 39 39 H 1.09000 * 109.45949 * 58.66617 * 10 8 7 40 40 H 1.09001 * 109.49347 * 181.31682 * 11 10 8 41 41 H 1.08998 * 109.49687 * 301.41384 * 11 10 8 42 42 H 1.09000 * 109.58615 * 185.57833 * 12 11 10 43 43 H 1.08998 * 109.58446 * 65.14816 * 12 11 10 44 44 H 1.09000 * 109.46874 * 299.99970 * 16 14 13 45 45 H 1.08997 * 109.47596 * 59.99862 * 16 14 13 46 46 H 0.97002 * 120.00528 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.59216 * 186.60571 * 26 13 12 48 48 H 1.09006 * 109.58250 * 66.18466 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1804 3.4855 -1.3184 6 9 1.8471 4.1131 -2.5236 7 6 1.9954 -0.7660 1.1376 8 6 1.6314 -2.2427 0.9703 9 1 0.5533 -2.3398 0.8417 10 6 2.0698 -3.0208 2.2131 11 6 1.6766 -4.4920 2.0609 12 6 2.3919 -5.0841 0.8424 13 7 2.0909 -4.2544 -0.3321 14 6 1.5895 -4.8083 -1.4538 15 8 1.3446 -4.1126 -2.4167 16 6 1.3330 -6.2922 -1.5118 17 16 0.6657 -6.7261 -3.1373 18 6 0.4666 -8.4648 -2.9321 19 1 0.7367 -8.9326 -1.9970 20 6 -0.0384 -9.2330 -3.9721 21 7 -0.3691 -8.6626 -5.1113 22 14 -0.2488 -11.0764 -3.7548 23 1 -1.6039 -11.3600 -3.2176 24 1 -0.0854 -11.7513 -5.0674 25 1 0.7756 -11.5832 -2.8067 26 6 2.3461 -2.8093 -0.2605 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5612 1.9272 0.8309 31 1 3.0798 1.3444 0.1083 32 1 2.0658 1.5015 -2.1491 33 1 0.5472 2.0846 -1.4264 34 1 1.7465 4.0418 -0.4875 35 1 3.2646 3.4581 -1.2104 36 1 1.5612 -0.3873 2.0628 37 1 3.0797 -0.6612 1.1755 38 1 3.1510 -2.9437 2.3271 39 1 1.5813 -2.6037 3.0937 40 1 1.9682 -5.0410 2.9563 41 1 0.5982 -4.5679 1.9221 42 1 2.0403 -6.1015 0.6710 43 1 3.4676 -5.0917 1.0183 44 1 2.2674 -6.8290 -1.3479 45 1 0.6155 -6.5674 -0.7388 46 1 -0.7217 -9.1995 -5.8382 47 1 1.9644 -2.3256 -1.1596 48 1 3.4182 -2.6315 -0.1746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566736595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:34 Heat of formation + Delta-G solvation = -119.259038 kcal Electronic energy + Delta-G solvation = -26453.790223 eV Core-core repulsion = 22582.719159 eV Total energy + Delta-G solvation = -3871.071064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -48.56596 -41.21574 -39.38494 -37.93552 -34.82173 -34.58847 -33.31939 -32.18234 -30.72572 -28.14889 -27.70929 -26.99911 -26.05934 -24.39874 -22.72604 -21.79596 -21.26205 -20.31678 -19.44246 -18.11608 -17.38567 -17.20729 -16.96318 -16.87860 -16.60880 -16.55720 -16.17351 -15.79177 -15.63363 -15.36327 -15.13030 -14.82308 -14.53167 -14.42526 -14.34557 -14.02359 -13.86585 -13.40442 -13.18026 -13.12043 -12.94402 -12.89222 -12.88092 -12.61092 -12.40983 -12.20664 -12.03347 -11.93050 -11.75793 -11.70870 -11.49060 -11.44169 -11.29217 -11.14628 -10.80692 -10.26124 -9.61785 -9.23122 -8.68170 -8.34661 -6.13519 1.25876 1.42415 1.46162 1.56798 1.60533 2.15552 2.27458 2.84537 2.99211 3.26274 3.68403 3.73253 3.82831 3.86850 3.91486 3.99440 4.07090 4.12350 4.18710 4.24033 4.27651 4.36192 4.41601 4.44552 4.46392 4.53594 4.63690 4.67080 4.69848 4.75987 4.77903 4.82612 4.96329 4.96902 5.03638 5.07321 5.13480 5.17940 5.27800 5.29502 5.41057 5.48673 5.64500 6.08921 6.16854 6.19464 6.35461 7.06073 7.19132 8.74698 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.002362 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.514999 B =11850.036762 C =13334.999500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.064 3.936 4 C -0.151 4.151 5 C 0.061 3.939 6 F -0.241 7.241 7 C 0.070 3.930 8 C -0.092 4.092 9 H 0.056 0.944 10 C -0.107 4.107 11 C -0.130 4.130 12 C 0.096 3.904 13 N -0.608 5.608 14 C 0.529 3.471 15 O -0.568 6.568 16 C -0.121 4.121 17 S -0.155 6.155 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.127 3.873 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.271 0.729 47 H 0.065 0.935 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 18.964 22.504 30.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.189 4.189 5 C 0.006 3.994 6 F -0.223 7.223 7 C -0.058 4.058 8 C -0.112 4.112 9 H 0.074 0.926 10 C -0.144 4.144 11 C -0.168 4.168 12 C -0.026 4.026 13 N -0.342 5.342 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.180 1.180 26 C 0.005 3.995 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.785 19.767 20.478 29.508 hybrid contribution -0.571 -1.439 0.970 1.826 sum 7.215 18.328 21.448 29.120 Atomic orbital electron populations 1.22394 0.87643 1.01617 1.00799 1.61857 1.08097 1.14330 1.44356 1.21961 1.01156 0.87502 0.95735 1.22147 1.01985 0.95323 0.99467 1.22134 1.02502 0.92165 0.82625 1.92735 1.94662 1.84384 1.50478 1.22113 1.01067 0.91391 0.91250 1.21512 0.99751 0.94931 0.95013 0.92597 1.21530 1.02524 0.93945 0.96450 1.21902 1.00098 0.97038 0.97742 1.22074 1.01532 0.94684 0.84286 1.48180 1.63475 1.09350 1.13196 1.20147 0.76321 0.89186 0.82677 1.90678 1.52835 1.63980 1.37177 1.23351 1.05239 0.95525 1.03102 1.85626 1.83227 1.09115 1.14818 1.23185 1.50084 0.92454 1.03502 0.89887 1.26164 0.93982 1.05259 0.93870 1.70192 1.41623 1.38448 1.04593 0.84933 0.79184 0.75650 0.78078 1.19252 1.20292 1.18049 1.21558 0.99966 0.78387 0.99547 0.94287 0.91716 0.92862 0.93048 0.89046 0.91881 0.91648 0.88782 0.88834 0.92875 0.89027 0.89903 0.90019 0.87876 0.92914 0.89834 0.89103 0.87606 0.87730 0.91992 0.91594 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 127.69 1.17 1.60 16 2 N -0.56 -9.57 4.34 -922.44 -4.00 -13.57 16 3 C 0.06 0.76 4.96 86.30 0.43 1.19 16 4 C -0.15 -2.24 5.60 30.59 0.17 -2.06 16 5 C 0.06 0.71 7.55 71.98 0.54 1.26 16 6 F -0.24 -4.84 17.36 44.97 0.78 -4.06 16 7 C 0.07 0.92 4.35 86.30 0.38 1.30 16 8 C -0.09 -1.61 2.26 -10.71 -0.02 -1.63 16 9 H 0.06 1.24 6.34 -2.38 -0.02 1.22 16 10 C -0.11 -1.26 5.17 30.63 0.16 -1.10 16 11 C -0.13 -1.85 6.08 30.67 0.19 -1.66 16 12 C 0.10 1.87 6.34 86.36 0.55 2.42 16 13 N -0.61 -17.34 2.97 -818.92 -2.43 -19.77 16 14 C 0.53 21.25 7.72 87.66 0.68 21.92 16 15 O -0.57 -28.32 15.28 -3.05 -0.05 -28.37 16 16 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 17 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 18 C -0.54 -31.61 9.50 67.95 0.65 -30.97 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.96 13.22 21.65 0.29 -56.68 16 22 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 C 0.13 3.15 5.54 86.36 0.48 3.63 16 27 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 1.23 6.30 -2.39 -0.02 1.22 16 29 H 0.05 1.19 6.37 -2.39 -0.02 1.17 16 30 H 0.05 0.46 8.12 -2.39 -0.02 0.44 16 31 H 0.09 0.84 7.93 -2.39 -0.02 0.82 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.09 6.47 -2.38 -0.02 1.07 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 37 H 0.09 0.96 7.93 -2.39 -0.02 0.94 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.72 5.93 -2.39 -0.01 1.71 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 4.01 7.94 -2.40 -0.02 3.99 16 45 H 0.10 3.98 7.69 -2.40 -0.02 3.96 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 47 H 0.07 2.17 6.79 -2.39 -0.02 2.15 16 48 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -80.33 392.27 2.52 -77.81 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.93 Total: 16.40 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 6.14 Total: -7.71 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -6.15 Total: -90.02 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.06 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -80.33 2.52 -77.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566736595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.448 kcal (2) G-P(sol) polarization free energy of solvation -80.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds