Wall clock time and date at job start Tue Mar 31 2020 17:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40171 * 119.81682 * 2 1 4 4 C 1.35688 * 119.27018 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.48354 * 180.02562 * 4 3 2 6 6 N 1.36162 * 119.02759 * 359.97438 * 4 3 2 7 7 N 1.40106 * 133.22695 * 180.02562 * 6 4 3 8 8 C 1.31986 * 106.92637 * 180.02562 * 7 6 4 9 9 C 1.48125 * 125.32810 * 179.97438 * 8 7 6 10 10 O 1.21530 * 119.99583 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00301 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00021 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46853 * 325.00183 * 12 11 9 14 14 C 1.53000 * 109.46746 * 85.00203 * 12 11 9 15 15 C 1.52995 * 109.47120 * 205.00121 * 12 11 9 16 16 H 1.09008 * 109.47290 * 300.00178 * 15 12 11 17 17 C 1.53004 * 109.47281 * 60.00013 * 15 12 11 18 18 N 1.46497 * 109.47319 * 180.02562 * 15 12 11 19 19 C 1.36937 * 120.00167 * 154.99858 * 18 15 12 20 20 H 1.07993 * 120.00223 * 0.02562 * 19 18 15 21 21 C 1.38816 * 119.99987 * 180.02562 * 19 18 15 22 22 N 1.31615 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46951 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47147 * 119.99815 * 23 21 19 26 26 H 1.48496 * 109.47147 * 240.00001 * 23 21 19 27 27 N 1.33469 * 109.35152 * 359.97438 * 8 7 6 28 28 C 1.32502 * 109.75492 * 0.02562 * 27 8 7 29 29 N 1.31258 * 119.82378 * 179.72329 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00381 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99534 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00251 * 1 2 3 33 33 H 1.07997 * 120.36878 * 359.97249 * 3 2 1 34 34 H 1.08995 * 109.47072 * 89.99788 * 5 4 3 35 35 H 1.08998 * 109.46633 * 210.00025 * 5 4 3 36 36 H 1.09000 * 109.46888 * 329.99465 * 5 4 3 37 37 H 0.97004 * 120.00162 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47541 * 299.99697 * 14 12 11 39 39 H 1.09000 * 109.47461 * 60.00353 * 14 12 11 40 40 H 1.09008 * 109.46830 * 180.02562 * 14 12 11 41 41 H 1.08990 * 109.46731 * 60.00018 * 17 15 12 42 42 H 1.08995 * 109.46986 * 179.97438 * 17 15 12 43 43 H 1.09000 * 109.47087 * 300.00091 * 17 15 12 44 44 H 0.97000 * 120.00130 * 335.00169 * 18 15 12 45 45 H 0.97003 * 120.00340 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5609 1.2032 -0.0005 5 6 4.3377 2.4946 0.0000 6 7 4.2102 0.0064 -0.0005 7 7 5.5651 -0.3502 -0.0005 8 6 5.6153 -1.6691 -0.0011 9 6 6.8555 -2.4791 -0.0018 10 8 7.9397 -1.9301 -0.0015 11 7 6.7816 -3.8248 -0.0018 12 6 8.0082 -4.6258 -0.0020 13 1 8.7726 -4.1196 -0.5915 14 6 8.5041 -4.7994 1.4350 15 6 7.7204 -5.9992 -0.6116 16 1 6.9559 -6.5055 -0.0220 17 6 7.2244 -5.8257 -2.0485 18 7 8.9468 -6.8005 -0.6112 19 6 8.8714 -8.1678 -0.6111 20 1 7.9079 -8.6555 -0.6117 21 6 10.0336 -8.9270 -0.6102 22 7 11.2079 -8.3326 -0.6089 23 14 9.9308 -10.7921 -0.6108 24 1 8.5056 -11.2093 -0.6117 25 1 10.6037 -11.3245 -1.8228 26 1 10.6014 -11.3252 0.6021 27 7 4.3738 -2.1590 -0.0008 28 6 3.4995 -1.1634 -0.0007 29 7 2.1599 -1.1387 0.0055 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6671 2.1532 -0.0004 34 1 4.5253 2.8052 1.0278 35 1 5.2874 2.3474 -0.5143 36 1 3.7622 3.2650 -0.5131 37 1 5.9161 -4.2630 -0.0017 38 1 8.7092 -3.8209 1.8694 39 1 7.7397 -5.3056 2.0246 40 1 9.4170 -5.3950 1.4349 41 1 7.9888 -5.3195 -2.6380 42 1 7.0198 -6.8041 -2.4829 43 1 6.3118 -5.2297 -2.0484 44 1 9.8123 -6.3625 -0.6110 45 1 12.0201 -8.8631 -0.6087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570650308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:22 Heat of formation + Delta-G solvation = 109.010383 kcal Electronic energy + Delta-G solvation = -27711.796077 eV Core-core repulsion = 23767.392280 eV Total energy + Delta-G solvation = -3944.403797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.32562 -40.07467 -39.05203 -36.73308 -35.90275 -34.00148 -32.91248 -32.01735 -31.54521 -29.74457 -29.40984 -28.42713 -28.32834 -25.51607 -23.95758 -23.49598 -22.68615 -21.93997 -20.33935 -20.03557 -18.89245 -18.44964 -17.47727 -17.20651 -17.13880 -15.66565 -15.50889 -15.08242 -14.76584 -14.57041 -14.36675 -14.18144 -13.97682 -13.73758 -13.59004 -13.31909 -13.19057 -13.06977 -13.03158 -12.78737 -12.40960 -12.32466 -11.98492 -11.80589 -11.66178 -11.15638 -10.94350 -10.81165 -10.67993 -10.65702 -10.48045 -10.24356 -10.15911 -10.03726 -9.85408 -9.66404 -9.18157 -9.03631 -8.79815 -6.96312 -5.74911 -3.04334 -0.12947 0.17684 1.30760 1.53804 2.60196 2.76081 2.94480 3.27546 3.45372 3.47396 3.51289 3.53287 3.72741 4.04490 4.32777 4.51618 4.59115 4.63436 4.64386 4.77084 4.92403 4.97371 5.06911 5.29005 5.32975 5.48099 5.51680 5.59567 5.64576 5.69884 5.76717 5.78805 5.92110 6.15289 6.19944 6.39926 6.45345 6.55590 6.63949 6.84613 6.91678 6.97337 7.06750 7.31090 7.64302 7.72817 8.15196 8.42580 9.54235 10.09045 10.44501 11.47512 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.002198 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.178060 B =12734.222265 C =13527.678186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.236 3.764 3 C -0.225 4.225 4 C 0.207 3.793 5 C -0.124 4.124 6 N -0.332 5.332 7 N -0.270 5.270 8 C 0.246 3.754 9 C 0.607 3.393 10 O -0.508 6.508 11 N -0.686 5.686 12 C 0.135 3.865 13 H 0.090 0.910 14 C -0.154 4.154 15 C 0.169 3.831 16 H 0.054 0.946 17 C -0.166 4.166 18 N -0.717 5.717 19 C -0.236 4.236 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.499 5.499 28 C 0.452 3.548 29 N -0.458 5.458 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.175 0.825 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.411 0.589 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.386 0.614 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.636 25.152 2.025 34.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 C -0.250 4.250 4 C 0.090 3.910 5 C -0.181 4.181 6 N -0.113 5.113 7 N -0.103 5.103 8 C -0.038 4.038 9 C 0.386 3.614 10 O -0.380 6.380 11 N -0.338 5.338 12 C 0.031 3.969 13 H 0.108 0.892 14 C -0.212 4.212 15 C 0.058 3.942 16 H 0.072 0.928 17 C -0.226 4.226 18 N -0.360 5.360 19 C -0.367 4.367 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 N -0.234 5.234 28 C 0.091 3.909 29 N -0.175 5.175 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.192 0.808 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.247 0.753 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.399 24.384 2.044 33.173 hybrid contribution -0.007 -0.266 -0.086 0.279 sum -22.406 24.118 1.958 32.978 Atomic orbital electron populations 1.20907 0.86014 1.05058 1.04639 1.22091 0.98195 0.86771 0.85972 1.21657 0.91314 1.01505 1.10564 1.20929 0.92069 0.86530 0.91502 1.21102 1.01245 0.90596 1.05160 1.49041 1.07516 1.07999 1.46776 1.78890 0.88840 1.13354 1.29223 1.24384 0.93204 0.89608 0.96565 1.16309 0.84342 0.82325 0.78420 1.90860 1.26633 1.71495 1.49030 1.45865 1.11699 1.04277 1.71962 1.21534 0.85118 0.92168 0.98058 0.89189 1.22078 1.02811 1.01256 0.95086 1.20390 0.91380 0.88663 0.93728 0.92790 1.22459 0.99331 1.01120 0.99722 1.42292 1.02069 1.02931 1.88659 1.19243 0.92632 0.82156 1.42694 0.91024 1.24744 0.95290 0.97894 1.02991 1.69672 0.96560 1.34074 1.57588 0.86120 0.77189 0.85765 0.77128 1.20560 1.21941 1.21916 1.70866 0.97611 1.26831 1.28065 1.22651 0.90143 0.81650 0.96452 1.67898 1.01581 1.28906 1.19086 0.88567 0.89026 0.89121 0.80784 0.88348 0.88882 0.88255 0.75314 0.93312 0.92738 0.89691 0.93381 0.92473 0.94359 0.78023 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.25 10.19 36.01 0.37 0.12 16 2 C 0.24 1.52 6.83 -82.11 -0.56 0.96 16 3 C -0.23 -1.02 9.39 -39.77 -0.37 -1.40 16 4 C 0.21 1.55 6.86 -81.58 -0.56 0.99 16 5 C -0.12 -0.53 10.13 36.01 0.36 -0.17 16 6 N -0.33 -4.11 3.91 -10.07 -0.04 -4.15 16 7 N -0.27 -4.15 12.67 32.02 0.41 -3.75 16 8 C 0.25 4.02 7.92 -156.79 -1.24 2.78 16 9 C 0.61 10.54 7.81 -12.20 -0.10 10.44 16 10 O -0.51 -10.16 16.73 5.34 0.09 -10.07 16 11 N -0.69 -11.05 4.38 -54.66 -0.24 -11.29 16 12 C 0.14 2.44 2.21 -67.93 -0.15 2.29 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 14 C -0.15 -2.76 9.33 37.16 0.35 -2.42 16 15 C 0.17 3.35 2.52 -67.93 -0.17 3.18 16 16 H 0.05 1.06 8.08 -51.92 -0.42 0.64 16 17 C -0.17 -3.10 9.34 37.16 0.35 -2.75 16 18 N -0.72 -17.66 4.43 -53.43 -0.24 -17.90 16 19 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 23 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 N -0.50 -7.85 10.89 -12.24 -0.13 -7.99 16 28 C 0.45 6.25 8.98 -323.04 -2.90 3.35 16 29 N -0.46 -5.16 10.40 -10.01 -0.10 -5.26 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 -0.04 8.09 -51.93 -0.42 -0.46 16 33 H 0.17 -0.01 8.06 -52.49 -0.42 -0.44 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.10 8.09 -51.93 -0.42 -0.32 16 37 H 0.41 6.05 8.06 -40.82 -0.33 5.72 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.69 7.45 -51.92 -0.39 1.30 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 44 H 0.39 10.16 7.58 -40.82 -0.31 9.85 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -35.99 385.95 -10.03 -46.02 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.42 Total: 8.15 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -4.87 Total: 10.30 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: 0.38 Total: -77.61 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.99 -10.03 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570650308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.029 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds