Wall clock time and date at job start Tue Mar 31 2020 17:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40171 * 119.81682 * 2 1 4 4 C 1.35688 * 119.27018 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.48354 * 180.02562 * 4 3 2 6 6 N 1.36162 * 119.02759 * 359.97438 * 4 3 2 7 7 N 1.40106 * 133.22695 * 180.02562 * 6 4 3 8 8 C 1.31986 * 106.92637 * 180.02562 * 7 6 4 9 9 C 1.48125 * 125.32810 * 179.97438 * 8 7 6 10 10 O 1.21530 * 119.99583 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00301 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00021 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46853 * 325.00183 * 12 11 9 14 14 C 1.53000 * 109.46746 * 85.00203 * 12 11 9 15 15 C 1.52995 * 109.47120 * 205.00121 * 12 11 9 16 16 H 1.09008 * 109.47290 * 300.00178 * 15 12 11 17 17 C 1.53004 * 109.47281 * 60.00013 * 15 12 11 18 18 N 1.46497 * 109.47319 * 180.02562 * 15 12 11 19 19 C 1.36937 * 120.00167 * 154.99858 * 18 15 12 20 20 H 1.07993 * 120.00223 * 0.02562 * 19 18 15 21 21 C 1.38816 * 119.99987 * 180.02562 * 19 18 15 22 22 N 1.31615 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46951 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47147 * 119.99815 * 23 21 19 26 26 H 1.48496 * 109.47147 * 240.00001 * 23 21 19 27 27 N 1.33469 * 109.35152 * 359.97438 * 8 7 6 28 28 C 1.32502 * 109.75492 * 0.02562 * 27 8 7 29 29 N 1.31258 * 119.82378 * 179.72329 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00381 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99534 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00251 * 1 2 3 33 33 H 1.07997 * 120.36878 * 359.97249 * 3 2 1 34 34 H 1.08995 * 109.47072 * 89.99788 * 5 4 3 35 35 H 1.08998 * 109.46633 * 210.00025 * 5 4 3 36 36 H 1.09000 * 109.46888 * 329.99465 * 5 4 3 37 37 H 0.97004 * 120.00162 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47541 * 299.99697 * 14 12 11 39 39 H 1.09000 * 109.47461 * 60.00353 * 14 12 11 40 40 H 1.09008 * 109.46830 * 180.02562 * 14 12 11 41 41 H 1.08990 * 109.46731 * 60.00018 * 17 15 12 42 42 H 1.08995 * 109.46986 * 179.97438 * 17 15 12 43 43 H 1.09000 * 109.47087 * 300.00091 * 17 15 12 44 44 H 0.97000 * 120.00130 * 335.00169 * 18 15 12 45 45 H 0.97003 * 120.00340 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5609 1.2032 -0.0005 5 6 4.3377 2.4946 0.0000 6 7 4.2102 0.0064 -0.0005 7 7 5.5651 -0.3502 -0.0005 8 6 5.6153 -1.6691 -0.0011 9 6 6.8555 -2.4791 -0.0018 10 8 7.9397 -1.9301 -0.0015 11 7 6.7816 -3.8248 -0.0018 12 6 8.0082 -4.6258 -0.0020 13 1 8.7726 -4.1196 -0.5915 14 6 8.5041 -4.7994 1.4350 15 6 7.7204 -5.9992 -0.6116 16 1 6.9559 -6.5055 -0.0220 17 6 7.2244 -5.8257 -2.0485 18 7 8.9468 -6.8005 -0.6112 19 6 8.8714 -8.1678 -0.6111 20 1 7.9079 -8.6555 -0.6117 21 6 10.0336 -8.9270 -0.6102 22 7 11.2079 -8.3326 -0.6089 23 14 9.9308 -10.7921 -0.6108 24 1 8.5056 -11.2093 -0.6117 25 1 10.6037 -11.3245 -1.8228 26 1 10.6014 -11.3252 0.6021 27 7 4.3738 -2.1590 -0.0008 28 6 3.4995 -1.1634 -0.0007 29 7 2.1599 -1.1387 0.0055 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6671 2.1532 -0.0004 34 1 4.5253 2.8052 1.0278 35 1 5.2874 2.3474 -0.5143 36 1 3.7622 3.2650 -0.5131 37 1 5.9161 -4.2630 -0.0017 38 1 8.7092 -3.8209 1.8694 39 1 7.7397 -5.3056 2.0246 40 1 9.4170 -5.3950 1.4349 41 1 7.9888 -5.3195 -2.6380 42 1 7.0198 -6.8041 -2.4829 43 1 6.3118 -5.2297 -2.0484 44 1 9.8123 -6.3625 -0.6110 45 1 12.0201 -8.8631 -0.6087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570650308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:21 Heat of formation + Delta-G solvation = 85.094030 kcal Electronic energy + Delta-G solvation = -27712.833168 eV Core-core repulsion = 23767.392280 eV Total energy + Delta-G solvation = -3945.440888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.19610 -41.27391 -40.01039 -38.34935 -36.56837 -35.73706 -33.84268 -33.41479 -32.62821 -31.18921 -30.18591 -30.15662 -28.78423 -26.62726 -25.92410 -24.42176 -23.93512 -22.78241 -21.67997 -21.52495 -19.74608 -19.49455 -19.12728 -18.41784 -18.09559 -17.19090 -16.58138 -16.28218 -16.04576 -15.62278 -15.37806 -15.24513 -15.01300 -14.88284 -14.71760 -14.54664 -14.20468 -14.11685 -13.84942 -13.53407 -13.43588 -13.26588 -13.04940 -12.95792 -12.88189 -12.75764 -12.69115 -12.61623 -12.32630 -12.09011 -11.82442 -11.70055 -11.61154 -11.47795 -11.13250 -11.00503 -10.80671 -10.32925 -9.97843 -9.02041 -7.91178 -5.20376 -0.80173 -0.58693 0.49621 0.51615 1.49154 1.50176 1.54243 1.60432 1.84863 2.04288 2.21815 2.58149 2.80722 3.10438 3.16043 3.42735 3.68453 3.74111 3.98206 4.00225 4.13076 4.17896 4.27222 4.30005 4.43942 4.51900 4.56135 4.63566 4.69955 4.80911 4.81618 4.83609 4.88105 4.89676 5.00659 5.07139 5.08232 5.19519 5.28116 5.33416 5.37431 5.47575 5.56337 6.06887 6.27936 6.29289 6.54955 6.82164 7.36262 8.07492 8.32507 9.32304 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.002198 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.178060 B =12734.222265 C =13527.678186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.238 3.762 3 C -0.189 4.189 4 C 0.175 3.825 5 C -0.120 4.120 6 N -0.333 5.333 7 N -0.294 5.294 8 C 0.230 3.770 9 C 0.612 3.388 10 O -0.542 6.542 11 N -0.674 5.674 12 C 0.149 3.851 13 H 0.073 0.927 14 C -0.145 4.145 15 C 0.170 3.830 16 H 0.063 0.937 17 C -0.156 4.156 18 N -0.727 5.727 19 C -0.231 4.231 20 H 0.080 0.920 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.297 1.297 26 H -0.296 1.296 27 N -0.528 5.528 28 C 0.436 3.564 29 N -0.494 5.494 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.235 0.765 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.419 0.581 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.374 0.626 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.886 27.449 2.125 39.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 C -0.213 4.213 4 C 0.060 3.940 5 C -0.176 4.176 6 N -0.115 5.115 7 N -0.129 5.129 8 C -0.054 4.054 9 C 0.392 3.608 10 O -0.417 6.417 11 N -0.326 5.326 12 C 0.044 3.956 13 H 0.091 0.909 14 C -0.203 4.203 15 C 0.061 3.939 16 H 0.080 0.920 17 C -0.216 4.216 18 N -0.368 5.368 19 C -0.363 4.363 20 H 0.098 0.902 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.225 1.225 26 H -0.223 1.223 27 N -0.264 5.264 28 C 0.075 3.925 29 N -0.213 5.213 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.149 0.851 33 H 0.252 0.748 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.206 0.794 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -26.768 26.732 2.143 37.891 hybrid contribution 0.986 -0.724 -0.116 1.228 sum -25.783 26.008 2.026 36.678 Atomic orbital electron populations 1.21162 0.82582 1.06607 1.06075 1.23079 1.00172 0.86331 0.82857 1.22403 0.89919 1.03071 1.05872 1.21903 0.93507 0.86077 0.92509 1.21234 1.00389 0.90000 1.05997 1.49090 1.06190 1.09410 1.46832 1.78699 0.91287 1.12965 1.29928 1.23880 0.92950 0.89912 0.98691 1.16421 0.84525 0.82384 0.77421 1.90828 1.28082 1.72142 1.50602 1.45626 1.11329 1.03984 1.71666 1.21177 0.85467 0.91248 0.97688 0.90893 1.21961 1.02068 1.01105 0.95186 1.20512 0.89751 0.88956 0.94726 0.91950 1.22315 1.00122 1.00932 0.98255 1.42429 1.03071 1.02644 1.88653 1.19610 0.92766 0.83389 1.40507 0.90231 1.25533 0.95144 1.02151 1.04024 1.69831 0.97041 1.35388 1.59711 0.85096 0.77697 0.80713 0.76392 1.18890 1.22454 1.22294 1.70697 0.97615 1.28432 1.29638 1.22831 0.91047 0.81806 0.96772 1.68038 1.00177 1.31499 1.21596 0.86795 0.89926 0.85115 0.74816 0.87375 0.91477 0.83973 0.74271 0.93009 0.91628 0.91880 0.94407 0.93355 0.91710 0.79394 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.01 10.19 71.24 0.73 0.74 16 2 C 0.24 2.24 6.83 43.12 0.29 2.53 16 3 C -0.19 -0.81 9.39 22.15 0.21 -0.61 16 4 C 0.18 2.17 6.86 41.30 0.28 2.46 16 5 C -0.12 -0.69 10.13 71.24 0.72 0.03 16 6 N -0.33 -8.17 3.91 -185.76 -0.73 -8.90 16 7 N -0.29 -9.40 12.67 -52.60 -0.67 -10.06 16 8 C 0.23 7.82 7.92 137.40 1.09 8.91 16 9 C 0.61 22.18 7.81 86.87 0.68 22.86 16 10 O -0.54 -22.77 16.73 -3.81 -0.06 -22.83 16 11 N -0.67 -22.23 4.38 -445.13 -1.95 -24.18 16 12 C 0.15 5.51 2.21 44.99 0.10 5.61 16 13 H 0.07 2.99 7.58 -2.39 -0.02 2.97 16 14 C -0.14 -5.34 9.33 71.98 0.67 -4.67 16 15 C 0.17 6.77 2.52 44.99 0.11 6.89 16 16 H 0.06 2.41 8.08 -2.38 -0.02 2.40 16 17 C -0.16 -5.82 9.34 71.98 0.67 -5.14 16 18 N -0.73 -36.51 4.43 -322.94 -1.43 -37.94 16 19 C -0.23 -12.67 9.93 84.03 0.83 -11.84 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 22 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 23 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 N -0.53 -17.14 10.89 -192.62 -2.10 -19.23 16 28 C 0.44 12.09 8.98 261.57 2.35 14.44 16 29 N -0.49 -10.53 10.40 -185.59 -1.93 -12.46 16 30 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.13 -0.99 8.09 -2.39 -0.02 -1.01 16 33 H 0.24 -1.89 8.06 -2.91 -0.02 -1.92 16 34 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.14 -0.44 8.09 -2.39 -0.02 -0.46 16 37 H 0.42 12.46 8.06 -92.71 -0.75 11.71 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.61 7.45 -2.38 -0.02 2.59 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 2.05 7.45 -2.39 -0.02 2.03 16 44 H 0.37 20.44 7.58 -92.71 -0.70 19.74 16 45 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -83.95 385.95 2.24 -81.71 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.41 Total: 26.55 kcal Atomic # 6 Polarization: 29.08 SS G_CDS: 9.21 Total: 38.28 kcal Atomic # 7 Polarization: -163.79 SS G_CDS: -8.52 Total: -172.31 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -83.95 2.24 -81.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570650308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.800 kcal (2) G-P(sol) polarization free energy of solvation -83.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds