Wall clock time and date at job start Tue Mar 31 2020 17:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40165 * 119.82069 * 2 1 4 4 C 1.35687 * 119.27016 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.48375 * 180.02562 * 4 3 2 6 6 N 1.36166 * 119.02847 * 359.92852 * 4 3 2 7 7 N 1.40101 * 133.22548 * 180.02562 * 6 4 3 8 8 C 1.31993 * 106.92481 * 179.97438 * 7 6 4 9 9 C 1.48128 * 125.32052 * 180.02562 * 8 7 6 10 10 O 1.21523 * 120.00399 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99638 * 179.71846 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27146 * 11 9 8 13 13 H 1.08999 * 109.46845 * 325.00503 * 12 11 9 14 14 C 1.53000 * 109.47070 * 85.00207 * 12 11 9 15 15 C 1.52995 * 109.47455 * 205.00257 * 12 11 9 16 16 H 1.09005 * 109.47027 * 64.99854 * 15 12 11 17 17 C 1.53006 * 109.47210 * 305.00196 * 15 12 11 18 18 N 1.46493 * 109.47408 * 185.00009 * 15 12 11 19 19 C 1.36942 * 120.00370 * 205.00249 * 18 15 12 20 20 H 1.07992 * 119.99764 * 359.97438 * 19 18 15 21 21 C 1.38814 * 119.99906 * 180.02562 * 19 18 15 22 22 N 1.31623 * 120.00360 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99875 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47236 * 89.99464 * 23 21 19 25 25 H 1.48496 * 109.47382 * 209.99798 * 23 21 19 26 26 H 1.48509 * 109.46946 * 329.99619 * 23 21 19 27 27 N 1.33464 * 109.34871 * 0.25819 * 8 7 6 28 28 C 1.32495 * 109.75898 * 359.56211 * 27 8 7 29 29 N 1.31257 * 119.81960 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47157 * 270.01684 * 1 2 3 31 31 H 1.09000 * 109.47151 * 30.02053 * 1 2 3 32 32 H 1.09000 * 109.47653 * 150.02344 * 1 2 3 33 33 H 1.07999 * 120.36630 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.46813 * 269.92830 * 5 4 3 35 35 H 1.08998 * 109.47513 * 29.92479 * 5 4 3 36 36 H 1.09000 * 109.46781 * 149.92842 * 5 4 3 37 37 H 0.97001 * 119.99727 * 0.28043 * 11 9 8 38 38 H 1.08998 * 109.47598 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.46733 * 300.00717 * 14 12 11 40 40 H 1.08998 * 109.46925 * 59.99877 * 14 12 11 41 41 H 1.08999 * 109.46763 * 179.97438 * 17 15 12 42 42 H 1.08995 * 109.46755 * 299.99663 * 17 15 12 43 43 H 1.08997 * 109.46510 * 59.99992 * 17 15 12 44 44 H 0.97006 * 119.99661 * 25.00107 * 18 15 12 45 45 H 0.96998 * 119.99970 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5608 1.2030 -0.0005 5 6 4.3378 2.4943 0.0000 6 7 4.2101 0.0061 0.0004 7 7 5.5650 -0.3505 0.0007 8 6 5.6151 -1.6695 0.0024 9 6 6.8554 -2.4794 0.0038 10 8 7.9396 -1.9305 0.0030 11 7 6.7814 -3.8251 0.0111 12 6 8.0080 -4.6261 0.0185 13 1 8.7739 -4.1232 -0.5719 14 6 8.5003 -4.7917 1.4577 15 6 7.7217 -6.0029 -0.5841 16 1 7.4564 -5.8913 -1.6355 17 6 6.5610 -6.6575 0.1679 18 7 8.9151 -6.8446 -0.4682 19 6 9.1082 -7.8828 -1.3401 20 1 8.3804 -8.0814 -2.1128 21 6 10.2388 -8.6805 -1.2298 22 7 11.1256 -8.4388 -0.2876 23 14 10.5018 -10.0972 -2.4186 24 1 11.2600 -9.6166 -3.6015 25 1 11.2690 -11.1744 -1.7432 26 1 9.1853 -10.6270 -2.8564 27 7 4.3736 -2.1592 -0.0026 28 6 3.4993 -1.1636 0.0021 29 7 2.1597 -1.1388 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6671 2.1531 -0.0004 34 1 4.5258 2.8056 -1.0276 35 1 3.7622 3.2645 0.5134 36 1 5.2873 2.3467 0.5145 37 1 5.9160 -4.2632 0.0114 38 1 9.4131 -5.3873 1.4632 39 1 8.7042 -3.8108 1.8870 40 1 7.7343 -5.2945 2.0480 41 1 6.3568 -7.6382 -0.2618 42 1 6.8262 -6.7691 1.2192 43 1 5.6731 -6.0313 0.0815 44 1 9.5686 -6.6664 0.2262 45 1 11.9158 -8.9961 -0.2109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570650309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:26 Heat of formation + Delta-G solvation = 113.471571 kcal Electronic energy + Delta-G solvation = -27726.479941 eV Core-core repulsion = 23782.269596 eV Total energy + Delta-G solvation = -3944.210346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.32599 -40.08838 -39.07619 -36.89985 -35.90250 -33.97780 -32.91286 -32.04273 -31.55598 -29.67112 -29.32977 -28.39903 -28.14922 -25.62914 -24.30105 -23.52128 -22.94813 -22.05145 -20.44855 -19.30284 -18.90850 -18.37822 -17.59327 -17.20791 -17.12455 -15.59842 -15.51074 -15.11436 -14.75520 -14.60903 -14.35561 -14.24049 -14.17426 -13.89488 -13.73809 -13.42701 -13.18991 -13.06502 -12.82364 -12.76610 -12.47132 -12.29276 -11.99658 -11.86609 -11.60076 -11.25169 -10.93027 -10.78420 -10.67045 -10.50536 -10.45424 -10.26437 -10.18134 -10.03697 -9.94871 -9.63645 -9.18212 -8.92579 -8.86497 -6.97321 -5.75254 -3.04589 -0.12937 0.17689 1.30821 1.53744 2.60288 2.76068 2.94845 3.27424 3.46036 3.47568 3.51287 3.52711 3.72963 4.04650 4.33099 4.51910 4.59386 4.63093 4.64128 4.77275 4.92320 4.97442 5.06969 5.31479 5.35448 5.48067 5.49366 5.59487 5.63937 5.66113 5.70377 5.78778 5.84393 6.09092 6.18218 6.33670 6.41024 6.49416 6.66001 6.76251 6.87986 6.97311 7.12688 7.30573 7.64427 7.72598 8.15524 8.43195 9.54558 10.09481 10.44734 11.47340 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.002194 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.975687 B =12761.081259 C =13439.681706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.236 3.764 3 C -0.225 4.225 4 C 0.207 3.793 5 C -0.124 4.124 6 N -0.332 5.332 7 N -0.269 5.269 8 C 0.246 3.754 9 C 0.606 3.394 10 O -0.508 6.508 11 N -0.689 5.689 12 C 0.135 3.865 13 H 0.093 0.907 14 C -0.161 4.161 15 C 0.168 3.832 16 H 0.054 0.946 17 C -0.170 4.170 18 N -0.719 5.719 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 N -0.500 5.500 28 C 0.452 3.548 29 N -0.458 5.458 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.411 0.589 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.036 0.964 44 H 0.387 0.613 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.853 24.840 2.724 34.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 C -0.250 4.250 4 C 0.090 3.910 5 C -0.181 4.181 6 N -0.113 5.113 7 N -0.103 5.103 8 C -0.038 4.038 9 C 0.385 3.615 10 O -0.380 6.380 11 N -0.342 5.342 12 C 0.031 3.969 13 H 0.111 0.889 14 C -0.219 4.219 15 C 0.058 3.942 16 H 0.072 0.928 17 C -0.231 4.231 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 N -0.234 5.234 28 C 0.091 3.909 29 N -0.175 5.175 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.192 0.808 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.249 0.751 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.222 0.778 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.564 24.122 2.581 33.131 hybrid contribution 0.086 -0.141 -0.383 0.417 sum -22.478 23.981 2.198 32.943 Atomic orbital electron populations 1.20906 0.86013 1.05074 1.04625 1.22088 0.98194 0.86769 0.85973 1.21656 0.91312 1.01507 1.10563 1.20930 0.92071 0.86525 0.91498 1.21104 1.01229 0.90591 1.05183 1.49043 1.07516 1.08001 1.46773 1.78893 0.88843 1.13338 1.29203 1.24389 0.93203 0.89612 0.96578 1.16349 0.84347 0.82407 0.78411 1.90858 1.26616 1.71545 1.48959 1.46055 1.11879 1.04246 1.72041 1.21525 0.85100 0.92213 0.98034 0.88872 1.22166 1.02455 1.01668 0.95621 1.20361 0.89139 0.87568 0.97166 0.92787 1.22546 0.97799 1.01179 1.01540 1.42448 1.21827 1.33672 1.38279 1.19228 1.04197 1.05093 1.08489 0.91069 1.24746 0.97278 0.99863 0.98992 1.69659 1.12292 1.41447 1.34594 0.86176 0.77614 0.82001 0.80298 1.21732 1.21813 1.20766 1.70857 0.97624 1.26858 1.28071 1.22647 0.90140 0.81646 0.96455 1.67895 1.01579 1.28909 1.19092 0.88580 0.89113 0.89020 0.80780 0.88330 0.88258 0.88888 0.75093 0.90080 0.92959 0.92218 0.92233 0.92731 0.94504 0.77751 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.25 10.19 36.01 0.37 0.12 16 2 C 0.24 1.52 6.83 -82.11 -0.56 0.96 16 3 C -0.23 -1.03 9.39 -39.77 -0.37 -1.40 16 4 C 0.21 1.55 6.86 -81.58 -0.56 0.99 16 5 C -0.12 -0.53 10.13 36.01 0.36 -0.17 16 6 N -0.33 -4.12 3.91 -10.07 -0.04 -4.16 16 7 N -0.27 -4.16 12.67 32.02 0.41 -3.76 16 8 C 0.25 4.05 7.92 -156.79 -1.24 2.80 16 9 C 0.61 10.63 7.81 -12.20 -0.10 10.53 16 10 O -0.51 -10.23 16.73 5.35 0.09 -10.14 16 11 N -0.69 -11.26 4.99 -54.66 -0.27 -11.53 16 12 C 0.14 2.46 2.62 -67.93 -0.18 2.29 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 14 C -0.16 -2.83 9.00 37.16 0.33 -2.49 16 15 C 0.17 3.37 2.93 -67.93 -0.20 3.17 16 16 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 17 C -0.17 -3.05 9.01 37.16 0.33 -2.71 16 18 N -0.72 -17.87 5.03 -53.43 -0.27 -18.14 16 19 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 N -0.50 -7.91 10.89 -12.23 -0.13 -8.05 16 28 C 0.45 6.28 8.99 -323.04 -2.90 3.38 16 29 N -0.46 -5.17 10.40 -10.02 -0.10 -5.27 16 30 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 -0.04 8.09 -51.93 -0.42 -0.46 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.10 8.09 -51.93 -0.42 -0.32 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.41 6.20 6.25 -40.82 -0.26 5.94 16 38 H 0.08 1.55 6.29 -51.93 -0.33 1.22 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.98 6.56 -51.93 -0.34 0.64 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.97 6.56 -51.93 -0.34 0.63 16 43 H 0.04 0.55 6.29 -51.93 -0.33 0.23 16 44 H 0.39 10.09 5.77 -40.82 -0.24 9.85 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -36.31 378.25 -9.86 -46.17 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.98 Total: 8.81 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -4.95 Total: 10.25 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: 0.31 Total: -78.31 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.31 -9.86 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570650309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.643 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds