Wall clock time and date at job start Tue Mar 31 2020 17:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40165 * 119.82069 * 2 1 4 4 C 1.35687 * 119.27016 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.48375 * 180.02562 * 4 3 2 6 6 N 1.36166 * 119.02847 * 359.92852 * 4 3 2 7 7 N 1.40101 * 133.22548 * 180.02562 * 6 4 3 8 8 C 1.31993 * 106.92481 * 179.97438 * 7 6 4 9 9 C 1.48128 * 125.32052 * 180.02562 * 8 7 6 10 10 O 1.21523 * 120.00399 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99638 * 179.71846 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27146 * 11 9 8 13 13 H 1.08999 * 109.46845 * 325.00503 * 12 11 9 14 14 C 1.53000 * 109.47070 * 85.00207 * 12 11 9 15 15 C 1.52995 * 109.47455 * 205.00257 * 12 11 9 16 16 H 1.09005 * 109.47027 * 64.99854 * 15 12 11 17 17 C 1.53006 * 109.47210 * 305.00196 * 15 12 11 18 18 N 1.46493 * 109.47408 * 185.00009 * 15 12 11 19 19 C 1.36942 * 120.00370 * 205.00249 * 18 15 12 20 20 H 1.07992 * 119.99764 * 359.97438 * 19 18 15 21 21 C 1.38814 * 119.99906 * 180.02562 * 19 18 15 22 22 N 1.31623 * 120.00360 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99875 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47236 * 89.99464 * 23 21 19 25 25 H 1.48496 * 109.47382 * 209.99798 * 23 21 19 26 26 H 1.48509 * 109.46946 * 329.99619 * 23 21 19 27 27 N 1.33464 * 109.34871 * 0.25819 * 8 7 6 28 28 C 1.32495 * 109.75898 * 359.56211 * 27 8 7 29 29 N 1.31257 * 119.81960 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47157 * 270.01684 * 1 2 3 31 31 H 1.09000 * 109.47151 * 30.02053 * 1 2 3 32 32 H 1.09000 * 109.47653 * 150.02344 * 1 2 3 33 33 H 1.07999 * 120.36630 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.46813 * 269.92830 * 5 4 3 35 35 H 1.08998 * 109.47513 * 29.92479 * 5 4 3 36 36 H 1.09000 * 109.46781 * 149.92842 * 5 4 3 37 37 H 0.97001 * 119.99727 * 0.28043 * 11 9 8 38 38 H 1.08998 * 109.47598 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.46733 * 300.00717 * 14 12 11 40 40 H 1.08998 * 109.46925 * 59.99877 * 14 12 11 41 41 H 1.08999 * 109.46763 * 179.97438 * 17 15 12 42 42 H 1.08995 * 109.46755 * 299.99663 * 17 15 12 43 43 H 1.08997 * 109.46510 * 59.99992 * 17 15 12 44 44 H 0.97006 * 119.99661 * 25.00107 * 18 15 12 45 45 H 0.96998 * 119.99970 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2161 0.0000 4 6 3.5608 1.2030 -0.0005 5 6 4.3378 2.4943 0.0000 6 7 4.2101 0.0061 0.0004 7 7 5.5650 -0.3505 0.0007 8 6 5.6151 -1.6695 0.0024 9 6 6.8554 -2.4794 0.0038 10 8 7.9396 -1.9305 0.0030 11 7 6.7814 -3.8251 0.0111 12 6 8.0080 -4.6261 0.0185 13 1 8.7739 -4.1232 -0.5719 14 6 8.5003 -4.7917 1.4577 15 6 7.7217 -6.0029 -0.5841 16 1 7.4564 -5.8913 -1.6355 17 6 6.5610 -6.6575 0.1679 18 7 8.9151 -6.8446 -0.4682 19 6 9.1082 -7.8828 -1.3401 20 1 8.3804 -8.0814 -2.1128 21 6 10.2388 -8.6805 -1.2298 22 7 11.1256 -8.4388 -0.2876 23 14 10.5018 -10.0972 -2.4186 24 1 11.2600 -9.6166 -3.6015 25 1 11.2690 -11.1744 -1.7432 26 1 9.1853 -10.6270 -2.8564 27 7 4.3736 -2.1592 -0.0026 28 6 3.4993 -1.1636 0.0021 29 7 2.1597 -1.1388 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6671 2.1531 -0.0004 34 1 4.5258 2.8056 -1.0276 35 1 3.7622 3.2645 0.5134 36 1 5.2873 2.3467 0.5145 37 1 5.9160 -4.2632 0.0114 38 1 9.4131 -5.3873 1.4632 39 1 8.7042 -3.8108 1.8870 40 1 7.7343 -5.2945 2.0480 41 1 6.3568 -7.6382 -0.2618 42 1 6.8262 -6.7691 1.2192 43 1 5.6731 -6.0313 0.0815 44 1 9.5686 -6.6664 0.2262 45 1 11.9158 -8.9961 -0.2109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570650309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:25 Heat of formation + Delta-G solvation = 88.878620 kcal Electronic energy + Delta-G solvation = -27727.546372 eV Core-core repulsion = 23782.269596 eV Total energy + Delta-G solvation = -3945.276776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.20301 -41.31109 -40.03577 -38.50648 -36.57256 -35.73622 -33.87327 -33.42040 -32.62488 -31.13893 -30.18687 -29.83604 -28.78992 -26.77025 -26.15195 -24.71186 -24.12704 -22.82795 -21.71163 -20.80734 -19.80841 -19.48356 -19.18116 -18.46323 -18.10254 -17.04148 -16.67711 -16.28543 -16.12611 -15.86511 -15.54675 -15.26802 -15.20195 -14.82056 -14.65850 -14.57886 -14.20887 -13.98829 -13.85317 -13.56195 -13.43537 -13.14434 -13.05085 -13.02274 -12.88234 -12.80566 -12.68297 -12.66252 -12.13461 -12.10962 -11.75205 -11.71097 -11.66635 -11.54787 -11.13564 -10.96128 -10.81269 -10.33517 -9.98393 -9.04004 -7.92991 -5.22133 -0.80793 -0.59108 0.49083 0.50626 1.48027 1.50322 1.53472 1.58819 1.83658 2.03795 2.21182 2.57201 2.80018 3.10201 3.15308 3.40272 3.69576 3.80710 3.94173 3.99290 4.02094 4.17473 4.26087 4.27672 4.43181 4.51720 4.55317 4.62384 4.65672 4.80718 4.81290 4.81423 4.88024 4.89784 4.96559 5.07559 5.17215 5.17858 5.20337 5.32425 5.35203 5.53570 5.58867 6.05666 6.27089 6.28669 6.54211 6.80784 7.35679 8.07691 8.32828 9.30380 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.002194 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.975687 B =12761.081259 C =13439.681706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.238 3.762 3 C -0.189 4.189 4 C 0.175 3.825 5 C -0.120 4.120 6 N -0.333 5.333 7 N -0.293 5.293 8 C 0.229 3.771 9 C 0.610 3.390 10 O -0.542 6.542 11 N -0.676 5.676 12 C 0.148 3.852 13 H 0.071 0.929 14 C -0.152 4.152 15 C 0.167 3.833 16 H 0.049 0.951 17 C -0.160 4.160 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.077 0.923 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.269 1.269 27 N -0.528 5.528 28 C 0.436 3.564 29 N -0.493 5.493 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.236 0.764 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.378 0.622 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.906 27.304 2.467 39.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 C -0.212 4.212 4 C 0.060 3.940 5 C -0.176 4.176 6 N -0.115 5.115 7 N -0.128 5.128 8 C -0.055 4.055 9 C 0.391 3.609 10 O -0.416 6.416 11 N -0.330 5.330 12 C 0.043 3.957 13 H 0.089 0.911 14 C -0.210 4.210 15 C 0.058 3.942 16 H 0.067 0.933 17 C -0.219 4.219 18 N -0.373 5.373 19 C -0.370 4.370 20 H 0.095 0.905 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.194 1.194 27 N -0.265 5.265 28 C 0.076 3.924 29 N -0.213 5.213 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.101 0.899 33 H 0.252 0.748 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.258 0.742 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.212 0.788 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -26.732 26.643 2.311 37.812 hybrid contribution 1.019 -0.645 -0.308 1.245 sum -25.713 25.998 2.003 36.620 Atomic orbital electron populations 1.21163 0.82563 1.06606 1.06097 1.23080 1.00179 0.86324 0.82838 1.22406 0.89906 1.03082 1.05837 1.21908 0.93514 0.86063 0.92516 1.21237 1.00401 0.90000 1.05988 1.49091 1.06175 1.09422 1.46824 1.78700 0.91312 1.12915 1.29887 1.23871 0.92937 0.89932 0.98759 1.16472 0.84567 0.82466 0.77411 1.90824 1.28079 1.72184 1.50544 1.45817 1.11453 1.03981 1.71761 1.21168 0.85336 0.91204 0.97979 0.91055 1.22061 1.02013 1.01623 0.95294 1.20481 0.88305 0.87912 0.97469 0.93273 1.22374 0.97820 1.00826 1.00930 1.42605 1.23156 1.33884 1.37696 1.19600 1.03873 1.05182 1.08343 0.90505 1.25545 0.97472 1.02742 1.00985 1.69816 1.12808 1.42677 1.36564 0.85147 0.77757 0.78849 0.78030 1.21699 1.22278 1.19369 1.70684 0.97622 1.28486 1.29659 1.22826 0.91049 0.81789 0.96767 1.68037 1.00148 1.31507 1.21602 0.86747 0.85120 0.89937 0.74790 0.87421 0.83933 0.91453 0.74157 0.91819 0.92672 0.90820 0.93361 0.92604 0.91399 0.78752 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.01 10.19 71.24 0.73 0.74 16 2 C 0.24 2.24 6.83 43.11 0.29 2.54 16 3 C -0.19 -0.81 9.39 22.15 0.21 -0.60 16 4 C 0.17 2.18 6.86 41.30 0.28 2.47 16 5 C -0.12 -0.70 10.13 71.24 0.72 0.02 16 6 N -0.33 -8.21 3.91 -185.76 -0.73 -8.94 16 7 N -0.29 -9.43 12.67 -52.60 -0.67 -10.10 16 8 C 0.23 7.88 7.92 137.40 1.09 8.97 16 9 C 0.61 22.46 7.81 86.87 0.68 23.13 16 10 O -0.54 -23.03 16.73 -3.79 -0.06 -23.09 16 11 N -0.68 -22.74 4.99 -445.14 -2.22 -24.96 16 12 C 0.15 5.56 2.62 44.99 0.12 5.68 16 13 H 0.07 3.02 7.58 -2.39 -0.02 3.00 16 14 C -0.15 -5.48 9.00 71.98 0.65 -4.83 16 15 C 0.17 6.81 2.93 44.99 0.13 6.94 16 16 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 17 C -0.16 -5.62 9.01 71.98 0.65 -4.97 16 18 N -0.73 -37.16 5.03 -322.95 -1.63 -38.79 16 19 C -0.24 -13.32 9.93 84.03 0.83 -12.49 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 21 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 22 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 23 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 N -0.53 -17.30 10.89 -192.62 -2.10 -19.40 16 28 C 0.44 12.15 8.99 261.57 2.35 14.50 16 29 N -0.49 -10.55 10.40 -185.60 -1.93 -12.48 16 30 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.13 -0.99 8.09 -2.39 -0.02 -1.00 16 32 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.24 -1.90 8.06 -2.91 -0.02 -1.93 16 34 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.14 -0.45 8.09 -2.39 -0.02 -0.47 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 37 H 0.42 12.74 6.25 -92.71 -0.58 12.16 16 38 H 0.06 2.54 6.29 -2.39 -0.02 2.52 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.42 6.56 -2.39 -0.02 2.41 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.95 6.56 -2.39 -0.02 1.94 16 43 H 0.07 1.96 6.29 -2.39 -0.02 1.94 16 44 H 0.38 20.42 5.77 -92.70 -0.54 19.89 16 45 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -84.96 378.25 2.11 -82.84 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.06 Total: 27.38 kcal Atomic # 6 Polarization: 29.00 SS G_CDS: 9.20 Total: 38.19 kcal Atomic # 7 Polarization: -165.30 SS G_CDS: -8.98 Total: -174.28 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.09 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -84.96 2.11 -82.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570650309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.722 kcal (2) G-P(sol) polarization free energy of solvation -84.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds