Wall clock time and date at job start Tue Mar 31 2020 17:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38043 * 126.29028 * 2 1 4 4 C 1.47433 * 126.41346 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00166 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99456 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99555 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47006 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47178 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47380 * 179.97438 * 9 8 7 11 11 N 1.30835 * 125.95915 * 90.02347 * 10 9 8 12 12 C 1.33244 * 109.82681 * 179.97438 * 11 10 9 13 13 N 1.30712 * 108.94650 * 0.02562 * 12 11 10 14 14 N 1.34424 * 125.96453 * 270.00363 * 10 9 8 15 15 C 1.46504 * 126.82251 * 0.02562 * 14 10 9 16 16 C 1.41291 * 107.16960 * 180.24808 * 3 2 1 17 17 N 1.30446 * 108.02080 * 359.61638 * 16 3 2 18 18 N 1.34259 * 126.29187 * 180.02562 * 2 1 3 19 19 C 1.46502 * 125.75256 * 359.96234 * 18 2 1 20 20 C 1.50698 * 109.47441 * 89.99468 * 19 18 2 21 21 H 1.08003 * 119.99799 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00280 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00146 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99835 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47382 * 89.99653 * 24 22 20 26 26 H 1.48507 * 109.46913 * 209.99767 * 24 22 20 27 27 H 1.48500 * 109.46951 * 329.99143 * 24 22 20 28 28 H 1.08996 * 109.47625 * 89.97494 * 1 2 3 29 29 H 1.09003 * 109.47364 * 209.97766 * 1 2 3 30 30 H 1.09001 * 109.47240 * 329.97246 * 1 2 3 31 31 H 0.96994 * 120.00343 * 359.97438 * 6 4 3 32 32 H 1.08998 * 109.47505 * 59.99578 * 7 6 4 33 33 H 1.09005 * 109.46934 * 299.99225 * 7 6 4 34 34 H 1.08998 * 109.47424 * 59.99416 * 8 7 6 35 35 H 1.08998 * 109.46828 * 299.99612 * 8 7 6 36 36 H 1.08998 * 109.47237 * 59.99526 * 9 8 7 37 37 H 1.08998 * 109.47107 * 299.99665 * 9 8 7 38 38 H 1.07994 * 125.52335 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.47290 * 269.98164 * 15 14 10 40 40 H 1.09003 * 109.46644 * 29.98204 * 15 14 10 41 41 H 1.09001 * 109.46980 * 149.97523 * 15 14 10 42 42 H 1.08000 * 125.98695 * 179.74202 * 16 3 2 43 43 H 1.08997 * 109.46921 * 210.00005 * 19 18 2 44 44 H 1.08998 * 109.47009 * 329.99441 * 19 18 2 45 45 H 0.96999 * 120.00413 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5107 -0.0010 7 6 2.3643 4.9094 -0.0009 8 6 3.5900 5.8252 -0.0022 9 6 3.1352 7.2860 -0.0028 10 6 4.3424 8.1881 -0.0033 11 7 4.9574 8.6478 -1.0626 12 6 5.9826 9.4145 -0.6929 13 7 6.0346 9.4529 0.6126 14 7 4.9750 8.6611 1.0844 15 6 4.6282 8.4017 2.4840 16 6 3.6590 0.6499 -0.0058 17 7 3.6340 -0.6544 -0.0008 18 7 2.3017 -1.0821 -0.0005 19 6 1.8500 -2.4758 -0.0003 20 6 1.6943 -2.9536 -1.4210 21 1 1.9097 -2.2858 -2.2420 22 6 1.2767 -4.2433 -1.6728 23 7 1.1413 -4.6604 -2.9126 24 14 0.9034 -5.3981 -0.2528 25 1 -0.5275 -5.2730 0.1240 26 1 1.1864 -6.7966 -0.6646 27 1 1.7548 -5.0430 0.9109 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 3.7460 3.2973 -0.0006 32 1 1.7660 5.1037 0.8892 33 1 1.7654 5.1035 -0.8908 34 1 4.1880 5.6308 -0.8925 35 1 4.1893 5.6313 0.8874 36 1 2.5370 7.4807 0.8874 37 1 2.5361 7.4797 -0.8925 38 1 6.6605 9.9218 -1.3632 39 1 3.9271 9.1605 2.8312 40 1 4.1687 7.4168 2.5679 41 1 5.5309 8.4346 3.0940 42 1 4.5448 1.2677 -0.0113 43 1 2.5849 -3.0958 0.5131 44 1 0.8917 -2.5471 0.5141 45 1 0.8472 -5.5676 -3.0898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570752645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:18 Heat of formation + Delta-G solvation = 115.351281 kcal Electronic energy + Delta-G solvation = -26857.152528 eV Core-core repulsion = 22913.023692 eV Total energy + Delta-G solvation = -3944.128835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50146 -40.88885 -38.94850 -36.23206 -34.52332 -33.98481 -33.52058 -32.19714 -31.38311 -30.87776 -28.36859 -27.74731 -26.99641 -26.08991 -23.24820 -22.50349 -22.40496 -21.85405 -20.75610 -19.81167 -19.02567 -17.46058 -17.24687 -17.14762 -16.37352 -16.04225 -15.86245 -15.19267 -15.11918 -14.90118 -14.50001 -14.26532 -14.09057 -13.81185 -13.63465 -13.54594 -13.28131 -12.91056 -12.75159 -12.60630 -12.55588 -12.29207 -12.20945 -12.10660 -11.76725 -11.61652 -11.33081 -11.22884 -10.85769 -10.42569 -10.39314 -10.26540 -10.14363 -9.93601 -9.81044 -9.48500 -9.04177 -8.86384 -8.67727 -7.99233 -6.34121 -4.38977 1.17848 1.88067 2.09953 2.55123 2.70205 3.01519 3.10196 3.16703 3.20125 3.41081 3.68488 3.84921 4.01965 4.14313 4.27169 4.48206 4.57229 4.65814 4.70316 4.85897 4.88050 4.91289 5.05670 5.06909 5.16362 5.21973 5.36595 5.49098 5.62661 5.68805 5.75441 5.86435 5.88276 6.02484 6.04475 6.24227 6.35408 6.41633 6.43514 6.55703 6.57649 6.99183 7.16811 7.53614 7.66491 7.71269 8.18405 8.25233 8.53998 8.69071 9.19588 10.78067 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.029241 B = 0.001797 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.326799 B =15581.311480 C =15722.723058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.169 3.831 3 C -0.331 4.331 4 C 0.605 3.395 5 O -0.554 6.554 6 N -0.736 5.736 7 C 0.126 3.874 8 C -0.126 4.126 9 C -0.040 4.040 10 C 0.282 3.718 11 N -0.541 5.541 12 C 0.200 3.800 13 N -0.325 5.325 14 N -0.380 5.380 15 C 0.092 3.908 16 C 0.061 3.939 17 N -0.293 5.293 18 N -0.313 5.313 19 C 0.224 3.776 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.873 3.127 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.218 0.782 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.177 0.823 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.623 24.584 10.857 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 C -0.346 4.346 4 C 0.395 3.605 5 O -0.434 6.434 6 N -0.389 5.389 7 C 0.002 3.998 8 C -0.166 4.166 9 C -0.080 4.080 10 C 0.006 3.994 11 N -0.268 5.268 12 C -0.103 4.103 13 N -0.153 5.153 14 N -0.171 5.171 15 C -0.050 4.050 16 C -0.126 4.126 17 N -0.112 5.112 18 N -0.090 5.090 19 C 0.106 3.894 20 C -0.584 4.584 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.234 0.766 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.194 0.806 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.842 23.687 10.911 26.524 hybrid contribution -0.028 -0.143 0.592 0.610 sum 4.814 23.544 11.503 26.642 Atomic orbital electron populations 1.20596 0.86692 1.03653 1.04270 1.21481 0.94976 0.86417 0.93933 1.19665 0.93079 0.92571 1.29284 1.17257 0.84979 0.83844 0.74407 1.90696 1.16676 1.84454 1.51531 1.45669 1.09851 1.05382 1.77949 1.21179 0.95656 0.80233 1.02742 1.21750 0.98548 0.92372 1.03889 1.20131 0.90858 0.91293 1.05718 1.24320 0.96408 0.96123 0.82569 1.70515 1.10303 1.16809 1.29210 1.25994 0.96270 0.97051 0.90954 1.78062 1.07745 1.16261 1.13192 1.50274 1.22200 1.36639 1.07953 1.22011 1.02931 1.02908 0.77125 1.23740 0.96407 0.92538 0.99957 1.77146 0.98099 1.12415 1.23560 1.48904 1.02752 1.07545 1.49788 1.20155 0.95716 0.73317 1.00237 1.21084 1.48090 0.99189 0.89991 0.90022 1.24792 0.94302 0.97408 0.95872 1.69859 1.45083 1.18246 1.18669 0.86904 0.79504 0.81062 0.82694 1.19501 1.20354 1.18804 0.89438 0.91131 0.88654 0.76758 0.91438 0.91084 0.89942 0.91163 0.89037 0.87307 0.76597 0.90042 0.88685 0.88805 0.80600 0.92729 0.93411 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.57 36.01 0.34 -1.27 16 2 C 0.17 3.29 7.01 -81.60 -0.57 2.72 16 3 C -0.33 -5.72 6.13 -105.06 -0.64 -6.37 16 4 C 0.60 9.29 7.81 -12.52 -0.10 9.19 16 5 O -0.55 -9.89 14.84 5.28 0.08 -9.81 16 6 N -0.74 -7.83 5.55 -61.38 -0.34 -8.17 16 7 C 0.13 1.02 5.67 -4.04 -0.02 0.99 16 8 C -0.13 -0.71 5.31 -26.73 -0.14 -0.85 16 9 C -0.04 -0.21 5.34 -27.88 -0.15 -0.35 16 10 C 0.28 2.30 7.24 -155.70 -1.13 1.18 16 11 N -0.54 -5.53 11.19 -11.97 -0.13 -5.66 16 12 C 0.20 1.83 13.03 -91.81 -1.20 0.63 16 13 N -0.32 -3.23 12.70 29.29 0.37 -2.86 16 14 N -0.38 -3.00 4.04 -65.10 -0.26 -3.26 16 15 C 0.09 0.34 11.16 59.85 0.67 1.01 16 16 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 17 N -0.29 -6.05 12.50 30.86 0.39 -5.67 16 18 N -0.31 -6.79 3.56 -57.78 -0.21 -7.00 16 19 C 0.22 5.16 5.03 -5.19 -0.03 5.13 16 20 C -0.55 -14.82 9.94 -34.44 -0.34 -15.16 16 21 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 22 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 23 N -0.88 -25.68 13.96 55.43 0.77 -24.91 16 24 Si 0.87 19.58 27.47 -169.99 -4.67 14.91 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.07 1.13 7.05 -51.93 -0.37 0.77 16 30 H 0.09 1.54 6.50 -51.93 -0.34 1.20 16 31 H 0.40 3.37 7.43 -40.82 -0.30 3.06 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.27 7.76 -51.93 -0.40 -0.13 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.22 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.16 7.72 -51.93 -0.40 -0.24 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.18 2.02 7.50 -52.49 -0.39 1.63 16 43 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 44 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -36.34 383.92 -8.12 -44.46 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.31 Total: 2.41 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -3.60 Total: -0.24 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.59 Total: -57.52 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.67 Total: 14.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.34 -8.12 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570752645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.816 kcal (2) G-P(sol) polarization free energy of solvation -36.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds