Wall clock time and date at job start Tue Mar 31 2020 18:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46848 * 2 1 4 4 C 1.53003 * 109.46848 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47152 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47229 * 55.00128 * 5 4 3 7 7 C 1.52998 * 109.47309 * 174.99986 * 5 4 3 8 8 N 1.46504 * 109.47491 * 175.00045 * 7 5 4 9 9 C 1.36932 * 120.00237 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00149 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00003 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00050 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 120.00043 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.46946 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47058 * 119.99614 * 13 11 9 16 16 H 1.48500 * 109.46872 * 239.99585 * 13 11 9 17 17 N 1.46505 * 109.47130 * 295.00060 * 5 4 3 18 18 C 1.34777 * 119.99724 * 85.00158 * 17 5 4 19 19 O 1.21623 * 120.00245 * 359.97438 * 18 17 5 20 20 C 1.47315 * 119.99564 * 179.72651 * 18 17 5 21 21 C 1.39000 * 120.90852 * 359.97438 * 20 18 17 22 22 C 1.39715 * 119.29407 * 179.77609 * 21 20 18 23 23 C 1.35258 * 121.07960 * 0.51795 * 22 21 20 24 24 N 1.35720 * 121.57025 * 359.74221 * 23 22 21 25 25 N 1.40202 * 134.08720 * 180.02562 * 24 23 22 26 26 N 1.29021 * 106.96438 * 179.97438 * 25 24 23 27 27 N 1.28597 * 110.78172 * 359.97438 * 26 25 24 28 28 C 1.32044 * 110.21660 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47247 * 59.99984 * 1 2 3 30 30 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.99868 * 1 2 3 32 32 H 1.09000 * 109.46777 * 240.00521 * 2 1 3 33 33 H 1.08995 * 109.46828 * 120.00438 * 2 1 3 34 34 H 1.09000 * 109.47006 * 60.00661 * 3 2 1 35 35 H 1.08995 * 109.47764 * 299.99865 * 3 2 1 36 36 H 1.09000 * 109.47154 * 60.00132 * 4 3 2 37 37 H 1.09004 * 109.47247 * 300.00016 * 4 3 2 38 38 H 1.09003 * 109.47541 * 295.00165 * 7 5 4 39 39 H 1.09000 * 109.47194 * 54.99765 * 7 5 4 40 40 H 0.97000 * 119.99826 * 0.02562 * 8 7 5 41 41 H 0.97000 * 120.00334 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99792 * 264.99726 * 17 5 4 43 43 H 1.08006 * 120.34983 * 0.02562 * 21 20 18 44 44 H 1.08003 * 119.46235 * 180.27688 * 22 21 20 45 45 H 1.07997 * 119.21841 * 179.71519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8431 7 6 5.6047 2.8868 0.1277 8 7 6.1031 4.2593 0.0085 9 6 7.4469 4.5094 0.0903 10 1 8.1394 3.6949 0.2430 11 6 7.9189 5.8099 -0.0221 12 7 7.0749 6.8026 -0.2077 13 14 9.7521 6.1511 0.0902 14 1 10.4812 4.8746 0.3000 15 1 10.2157 6.7851 -1.1700 16 1 10.0166 7.0650 1.2305 17 7 3.6929 3.5403 -1.2505 18 6 2.4756 4.1073 -1.3659 19 8 1.6984 4.0745 -0.4311 20 6 2.0887 4.7716 -2.6226 21 6 2.9643 4.8251 -3.7009 22 6 2.5607 5.4596 -4.8784 23 6 1.3384 6.0297 -4.9807 24 7 0.4545 6.0054 -3.9510 25 7 -0.8460 6.4968 -3.7700 26 7 -1.2054 6.1784 -2.5724 27 7 -0.2689 5.5343 -1.9710 28 6 0.7749 5.3968 -2.7680 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9286 -0.8891 37 1 3.9330 0.9288 0.8909 38 1 5.8895 2.4799 1.0980 39 1 6.0357 2.2738 -0.6639 40 1 5.4810 4.9909 -0.1283 41 1 7.4048 7.7114 -0.2866 42 1 4.3128 3.5663 -1.9962 43 1 3.9447 4.3775 -3.6305 44 1 3.2371 5.4989 -5.7194 45 1 1.0592 6.5163 -5.9035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570810377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:03 Heat of formation + Delta-G solvation = 116.973555 kcal Electronic energy + Delta-G solvation = -28702.728259 eV Core-core repulsion = 24758.669771 eV Total energy + Delta-G solvation = -3944.058488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.45751 -40.04563 -38.60064 -36.59219 -34.95635 -34.19210 -33.55955 -32.17791 -31.66247 -30.62756 -30.07367 -27.30352 -25.58008 -24.47317 -24.23696 -23.47180 -22.30780 -21.24319 -20.73614 -20.35724 -18.91044 -17.75391 -17.67277 -17.02747 -16.97435 -16.17832 -15.93067 -15.29238 -14.84344 -14.68651 -14.28240 -13.92702 -13.86755 -13.48786 -13.28510 -13.18237 -13.09539 -12.76043 -12.67694 -12.61412 -12.51235 -12.12089 -11.96814 -11.53153 -11.32125 -11.11497 -11.05763 -10.95195 -10.87075 -10.83932 -10.43421 -10.39023 -10.31455 -10.06162 -9.81010 -9.78821 -9.00685 -8.88536 -8.68932 -7.04860 -5.86367 -3.16534 -0.22004 0.30720 1.45196 2.01837 2.40675 3.07300 3.35945 3.37962 3.40322 3.42652 3.44623 3.79944 4.11177 4.28753 4.48183 4.59516 4.84871 4.85596 5.07599 5.08863 5.17967 5.24900 5.31857 5.38717 5.40101 5.45414 5.48159 5.51680 5.64467 5.81720 5.89499 5.93231 5.97061 6.03603 6.07674 6.14697 6.21134 6.28223 6.37733 6.47175 6.59411 6.66701 6.84488 7.61260 7.65630 8.26776 8.31064 8.34717 9.43550 9.98650 10.33944 11.35717 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.004109 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.331251 B = 6813.010045 C = 9276.305480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.126 4.126 5 C 0.140 3.860 6 H 0.091 0.909 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.072 0.928 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.701 5.701 18 C 0.559 3.441 19 O -0.500 6.500 20 C -0.092 4.092 21 C -0.017 4.017 22 C -0.138 4.138 23 C 0.121 3.879 24 N -0.308 5.308 25 N -0.113 5.113 26 N -0.012 5.012 27 N -0.289 5.289 28 C 0.274 3.726 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.401 0.599 43 H 0.166 0.834 44 H 0.175 0.825 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.164 -9.124 -11.927 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.036 3.964 6 H 0.109 0.891 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.374 4.374 10 H 0.090 0.910 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.353 5.353 18 C 0.344 3.656 19 O -0.375 6.375 20 C -0.101 4.101 21 C -0.043 4.043 22 C -0.162 4.162 23 C -0.006 4.006 24 N -0.089 5.089 25 N -0.096 5.096 26 N -0.005 5.005 27 N -0.145 5.145 28 C 0.016 3.984 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.237 0.763 43 H 0.184 0.816 44 H 0.192 0.808 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.107 -8.667 -10.772 17.735 hybrid contribution 2.048 0.542 -0.887 2.297 sum -9.059 -8.126 -11.659 16.853 Atomic orbital electron populations 1.21745 0.96224 1.00773 1.02007 1.21559 0.95662 0.97661 1.01276 1.21686 0.94626 0.95448 1.03369 1.21988 0.96162 0.96053 1.02326 1.21382 0.96163 0.92525 0.86358 0.89055 1.20982 0.89025 0.89387 0.99009 1.42371 1.05433 1.02006 1.87898 1.19254 0.83605 0.92510 1.42047 0.91048 1.24738 0.97640 0.95646 1.02642 1.69671 1.32818 0.99005 1.56350 0.86141 0.85101 0.77819 0.77239 1.20527 1.21887 1.21849 1.45792 1.15061 1.56922 1.17559 1.17304 0.82846 0.79293 0.86193 1.90910 1.50680 1.57346 1.38529 1.20432 0.89230 1.03055 0.97385 1.22108 0.99115 0.92593 0.90494 1.21047 0.95166 0.99696 1.00278 1.21753 0.88300 0.98846 0.91681 1.48972 1.12972 1.34962 1.11962 1.82776 0.89083 1.23412 1.14304 1.78037 1.19340 1.04727 0.98411 1.75296 0.97037 1.18666 1.23548 1.23624 0.96339 0.95192 0.83272 0.93045 0.93375 0.92656 0.92708 0.92393 0.91286 0.91900 0.91900 0.90929 0.94665 0.95674 0.78004 0.93513 0.76323 0.81634 0.80755 0.79997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.38 5.93 -26.73 -0.16 -1.54 16 3 C -0.11 -1.50 3.81 -26.73 -0.10 -1.60 16 4 C -0.13 -1.57 4.89 -26.73 -0.13 -1.70 16 5 C 0.14 2.11 2.41 -67.93 -0.16 1.94 16 6 H 0.09 1.61 7.58 -51.92 -0.39 1.22 16 7 C 0.14 2.53 5.82 -4.04 -0.02 2.50 16 8 N -0.73 -16.77 5.43 -59.91 -0.33 -17.09 16 9 C -0.24 -6.30 9.99 -15.06 -0.15 -6.45 16 10 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 13 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 N -0.70 -9.73 4.42 -54.91 -0.24 -9.98 16 18 C 0.56 8.60 6.34 -12.57 -0.08 8.52 16 19 O -0.50 -9.35 13.41 5.26 0.07 -9.28 16 20 C -0.09 -1.20 6.06 -102.72 -0.62 -1.83 16 21 C -0.02 -0.15 9.63 -38.75 -0.37 -0.52 16 22 C -0.14 -0.81 9.92 -40.09 -0.40 -1.21 16 23 C 0.12 0.90 11.15 -16.89 -0.19 0.71 16 24 N -0.31 -3.89 3.94 -10.99 -0.04 -3.93 16 25 N -0.11 -1.68 13.99 60.35 0.84 -0.83 16 26 N -0.01 -0.21 13.36 60.35 0.81 0.60 16 27 N -0.29 -5.21 11.75 32.20 0.38 -4.83 16 28 C 0.27 4.17 7.85 -154.52 -1.21 2.96 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 35 H 0.06 0.92 5.65 -51.93 -0.29 0.62 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.39 9.50 7.33 -40.82 -0.30 9.20 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.40 4.83 6.71 -40.82 -0.27 4.56 16 43 H 0.17 1.06 6.49 -52.48 -0.34 0.72 16 44 H 0.18 0.31 8.06 -52.48 -0.42 -0.11 16 45 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -34.69 376.59 -6.67 -41.36 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.20 Total: 7.90 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.33 Total: 0.13 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 2.14 Total: -62.04 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.69 -6.67 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570810377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.338 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds