Wall clock time and date at job start Tue Mar 31 2020 18:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46848 * 2 1 4 4 C 1.53003 * 109.46848 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47152 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47229 * 55.00128 * 5 4 3 7 7 C 1.52998 * 109.47309 * 174.99986 * 5 4 3 8 8 N 1.46504 * 109.47491 * 175.00045 * 7 5 4 9 9 C 1.36932 * 120.00237 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00149 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00003 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00050 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 120.00043 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.46946 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47058 * 119.99614 * 13 11 9 16 16 H 1.48500 * 109.46872 * 239.99585 * 13 11 9 17 17 N 1.46505 * 109.47130 * 295.00060 * 5 4 3 18 18 C 1.34777 * 119.99724 * 85.00158 * 17 5 4 19 19 O 1.21623 * 120.00245 * 359.97438 * 18 17 5 20 20 C 1.47315 * 119.99564 * 179.72651 * 18 17 5 21 21 C 1.39000 * 120.90852 * 359.97438 * 20 18 17 22 22 C 1.39715 * 119.29407 * 179.77609 * 21 20 18 23 23 C 1.35258 * 121.07960 * 0.51795 * 22 21 20 24 24 N 1.35720 * 121.57025 * 359.74221 * 23 22 21 25 25 N 1.40202 * 134.08720 * 180.02562 * 24 23 22 26 26 N 1.29021 * 106.96438 * 179.97438 * 25 24 23 27 27 N 1.28597 * 110.78172 * 359.97438 * 26 25 24 28 28 C 1.32044 * 110.21660 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47247 * 59.99984 * 1 2 3 30 30 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.99868 * 1 2 3 32 32 H 1.09000 * 109.46777 * 240.00521 * 2 1 3 33 33 H 1.08995 * 109.46828 * 120.00438 * 2 1 3 34 34 H 1.09000 * 109.47006 * 60.00661 * 3 2 1 35 35 H 1.08995 * 109.47764 * 299.99865 * 3 2 1 36 36 H 1.09000 * 109.47154 * 60.00132 * 4 3 2 37 37 H 1.09004 * 109.47247 * 300.00016 * 4 3 2 38 38 H 1.09003 * 109.47541 * 295.00165 * 7 5 4 39 39 H 1.09000 * 109.47194 * 54.99765 * 7 5 4 40 40 H 0.97000 * 119.99826 * 0.02562 * 8 7 5 41 41 H 0.97000 * 120.00334 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99792 * 264.99726 * 17 5 4 43 43 H 1.08006 * 120.34983 * 0.02562 * 21 20 18 44 44 H 1.08003 * 119.46235 * 180.27688 * 22 21 20 45 45 H 1.07997 * 119.21841 * 179.71519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8431 7 6 5.6047 2.8868 0.1277 8 7 6.1031 4.2593 0.0085 9 6 7.4469 4.5094 0.0903 10 1 8.1394 3.6949 0.2430 11 6 7.9189 5.8099 -0.0221 12 7 7.0749 6.8026 -0.2077 13 14 9.7521 6.1511 0.0902 14 1 10.4812 4.8746 0.3000 15 1 10.2157 6.7851 -1.1700 16 1 10.0166 7.0650 1.2305 17 7 3.6929 3.5403 -1.2505 18 6 2.4756 4.1073 -1.3659 19 8 1.6984 4.0745 -0.4311 20 6 2.0887 4.7716 -2.6226 21 6 2.9643 4.8251 -3.7009 22 6 2.5607 5.4596 -4.8784 23 6 1.3384 6.0297 -4.9807 24 7 0.4545 6.0054 -3.9510 25 7 -0.8460 6.4968 -3.7700 26 7 -1.2054 6.1784 -2.5724 27 7 -0.2689 5.5343 -1.9710 28 6 0.7749 5.3968 -2.7680 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9286 -0.8891 37 1 3.9330 0.9288 0.8909 38 1 5.8895 2.4799 1.0980 39 1 6.0357 2.2738 -0.6639 40 1 5.4810 4.9909 -0.1283 41 1 7.4048 7.7114 -0.2866 42 1 4.3128 3.5663 -1.9962 43 1 3.9447 4.3775 -3.6305 44 1 3.2371 5.4989 -5.7194 45 1 1.0592 6.5163 -5.9035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570810377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:02 Heat of formation + Delta-G solvation = 92.260147 kcal Electronic energy + Delta-G solvation = -28703.799913 eV Core-core repulsion = 24758.669771 eV Total energy + Delta-G solvation = -3945.130142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.48184 -41.18738 -39.50827 -37.86999 -36.24412 -35.33678 -34.90261 -33.24537 -32.95140 -32.03789 -31.08163 -28.69872 -26.55552 -25.80301 -25.36211 -24.55825 -23.72610 -22.35011 -21.77950 -21.54346 -19.92027 -19.22716 -18.63667 -18.36615 -18.03026 -17.30786 -16.76308 -16.57040 -16.29906 -15.83470 -15.53448 -15.17944 -15.13342 -14.85811 -14.45785 -14.22897 -14.10548 -13.94286 -13.81003 -13.68027 -13.48466 -13.27376 -13.13384 -12.82824 -12.80659 -12.57470 -12.46207 -12.16171 -12.03437 -11.98448 -11.84669 -11.81010 -11.38293 -11.35026 -11.28971 -11.01502 -10.89544 -10.00393 -9.68186 -8.95771 -7.89927 -5.18752 -1.04836 -0.59611 0.58125 0.96817 1.50510 1.51216 1.54141 1.62299 2.01308 2.34866 2.49338 2.59884 2.86663 3.41244 3.45590 3.58438 3.65638 3.75462 4.02801 4.06208 4.10239 4.20430 4.26743 4.32980 4.38235 4.39773 4.56177 4.58106 4.65287 4.75050 4.87999 4.95232 4.97405 4.98933 5.01779 5.12031 5.15568 5.26394 5.33694 5.35159 5.42444 5.57130 5.59859 5.65527 6.30714 6.55328 7.17234 7.23693 7.39057 8.12592 8.36054 9.32952 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.004109 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.331251 B = 6813.010045 C = 9276.305480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.115 4.115 5 C 0.149 3.851 6 H 0.056 0.944 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.238 4.238 10 H 0.080 0.920 11 C -0.070 4.070 12 N -0.967 5.967 13 Si 0.967 3.033 14 H -0.265 1.265 15 H -0.292 1.292 16 H -0.304 1.304 17 N -0.692 5.692 18 C 0.558 3.442 19 O -0.547 6.547 20 C -0.134 4.134 21 C 0.015 3.985 22 C -0.115 4.115 23 C 0.119 3.881 24 N -0.305 5.305 25 N -0.121 5.121 26 N -0.039 5.039 27 N -0.341 5.341 28 C 0.255 3.745 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.374 0.626 41 H 0.248 0.752 42 H 0.412 0.588 43 H 0.193 0.807 44 H 0.234 0.766 45 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -10.822 -15.068 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.154 4.154 5 C 0.045 3.955 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.386 5.386 9 C -0.369 4.369 10 H 0.098 0.902 11 C -0.262 4.262 12 N -0.618 5.618 13 Si 0.797 3.203 14 H -0.189 1.189 15 H -0.219 1.219 16 H -0.232 1.232 17 N -0.345 5.345 18 C 0.344 3.656 19 O -0.425 6.425 20 C -0.144 4.144 21 C -0.010 4.010 22 C -0.138 4.138 23 C -0.006 4.006 24 N -0.085 5.085 25 N -0.105 5.105 26 N -0.032 5.032 27 N -0.199 5.199 28 C -0.002 4.002 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.206 0.794 41 H 0.057 0.943 42 H 0.249 0.751 43 H 0.210 0.790 44 H 0.251 0.749 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.571 -10.424 -13.939 19.402 hybrid contribution 1.368 1.026 -0.047 1.710 sum -7.204 -9.398 -13.986 18.325 Atomic orbital electron populations 1.21745 0.96478 1.01666 1.00882 1.21530 0.95446 0.96118 1.02541 1.21552 0.95238 0.96488 1.01131 1.21912 0.95328 0.94181 1.03982 1.21160 0.94435 0.93992 0.85959 0.92585 1.21124 0.90343 0.86934 0.99621 1.42546 1.04451 1.03823 1.87776 1.19651 0.84993 0.92593 1.39695 0.90198 1.25446 1.01256 0.95758 1.03762 1.69823 1.34411 0.98986 1.58607 0.85170 0.80963 0.77736 0.76432 1.18922 1.21872 1.23204 1.45638 1.14895 1.56602 1.17352 1.17676 0.82539 0.78706 0.86684 1.90885 1.52004 1.59157 1.40440 1.20271 0.89819 1.06157 0.98148 1.22651 0.98790 0.89962 0.89647 1.21786 0.94890 0.96656 1.00419 1.22928 0.87849 0.98127 0.91727 1.49112 1.12696 1.34281 1.12425 1.82574 0.90431 1.23806 1.13663 1.77955 1.20150 1.05783 0.99317 1.75133 0.98545 1.20557 1.25690 1.23757 0.96521 0.95952 0.83925 0.94192 0.91376 0.93871 0.91089 0.91276 0.94305 0.93616 0.89542 0.89753 0.94645 0.93172 0.79371 0.94280 0.75064 0.78968 0.74921 0.75433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.12 -2.52 5.93 30.59 0.18 -2.34 16 3 C -0.11 -2.85 3.81 30.59 0.12 -2.74 16 4 C -0.12 -2.72 4.89 30.59 0.15 -2.57 16 5 C 0.15 4.49 2.41 44.99 0.11 4.60 16 6 H 0.06 2.10 7.58 -2.38 -0.02 2.08 16 7 C 0.15 4.92 5.82 86.38 0.50 5.42 16 8 N -0.74 -33.48 5.43 -343.45 -1.87 -35.35 16 9 C -0.24 -12.00 9.99 84.03 0.84 -11.16 16 10 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 11 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 12 N -0.97 -55.82 13.06 21.65 0.28 -55.54 16 13 Si 0.97 43.20 29.55 68.60 2.03 45.23 16 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 17 N -0.69 -19.00 4.42 -445.89 -1.97 -20.97 16 18 C 0.56 17.84 6.34 86.63 0.55 18.39 16 19 O -0.55 -22.25 13.41 -4.10 -0.06 -22.30 16 20 C -0.13 -3.50 6.06 -18.63 -0.11 -3.61 16 21 C 0.01 0.21 9.63 22.81 0.22 0.43 16 22 C -0.12 -0.73 9.92 21.94 0.22 -0.51 16 23 C 0.12 1.31 11.15 83.40 0.93 2.24 16 24 N -0.31 -7.46 3.94 -188.68 -0.74 -8.20 16 25 N -0.12 -3.70 13.99 37.02 0.52 -3.18 16 26 N -0.04 -1.44 13.36 37.02 0.49 -0.95 16 27 N -0.34 -13.32 11.75 -52.05 -0.61 -13.93 16 28 C 0.26 8.04 7.85 135.75 1.07 9.11 16 29 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.26 7.84 -2.39 -0.02 1.24 16 35 H 0.05 1.39 5.65 -2.39 -0.01 1.37 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.37 18.57 7.33 -92.71 -0.68 17.89 16 41 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.41 9.14 6.71 -92.71 -0.62 8.51 16 43 H 0.19 1.60 6.49 -2.91 -0.02 1.58 16 44 H 0.23 -1.10 8.06 -2.91 -0.02 -1.12 16 45 H 0.23 0.33 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -82.67 376.59 3.76 -78.91 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.27 Total: 24.91 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.95 Total: 11.38 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -3.90 Total: -138.12 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -82.67 3.76 -78.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570810377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.171 kcal (2) G-P(sol) polarization free energy of solvation -82.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds