Wall clock time and date at job start Tue Mar 31 2020 18:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 C 1.52999 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47213 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47016 * 305.00335 * 5 4 3 7 7 C 1.52997 * 109.47504 * 185.00076 * 5 4 3 8 8 N 1.46505 * 109.47212 * 184.99959 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46951 * 89.99797 * 13 11 9 15 15 H 1.48500 * 109.47313 * 210.00112 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00153 * 13 11 9 17 17 N 1.46503 * 109.46834 * 64.99838 * 5 4 3 18 18 C 1.34773 * 120.00358 * 274.99972 * 17 5 4 19 19 O 1.21531 * 119.99991 * 0.02562 * 18 17 5 20 20 C 1.48130 * 120.00262 * 180.02562 * 18 17 5 21 21 N 1.33468 * 125.32309 * 0.02562 * 20 18 17 22 22 C 1.32494 * 109.75120 * 179.97438 * 21 20 18 23 23 N 1.33990 * 132.33767 * 180.02562 * 22 21 20 24 24 C 1.31267 * 120.87930 * 179.97438 * 23 22 21 25 25 C 1.40172 * 120.35552 * 0.02562 * 24 23 22 26 26 C 1.35684 * 119.27233 * 359.97438 * 25 24 23 27 27 N 1.36165 * 119.02933 * 359.97438 * 26 25 24 28 28 N 1.31982 * 125.32274 * 179.72384 * 20 18 17 29 29 H 1.08992 * 109.47313 * 60.00063 * 1 2 3 30 30 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47159 * 299.99780 * 1 2 3 32 32 H 1.08997 * 109.47204 * 240.00147 * 2 1 3 33 33 H 1.09006 * 109.47205 * 119.99744 * 2 1 3 34 34 H 1.08997 * 109.47118 * 60.00095 * 3 2 1 35 35 H 1.08997 * 109.46898 * 299.99625 * 3 2 1 36 36 H 1.08997 * 109.47204 * 60.00147 * 4 3 2 37 37 H 1.09001 * 109.47433 * 300.00171 * 4 3 2 38 38 H 1.09002 * 109.47153 * 64.99951 * 7 5 4 39 39 H 1.09001 * 109.46832 * 305.00142 * 7 5 4 40 40 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 41 41 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 42 42 H 0.97007 * 119.99919 * 95.00541 * 17 5 4 43 43 H 1.07996 * 119.81870 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.36540 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.48650 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1251 8 7 6.1029 4.2595 -0.0059 9 6 7.4468 4.5095 -0.0867 10 1 8.1395 3.6949 -0.2386 11 6 7.9188 5.8099 0.0268 12 7 7.0748 6.8026 0.2124 13 14 9.7521 6.1512 -0.0841 14 1 10.1238 6.4038 -1.4994 15 1 10.0840 7.3442 0.7355 16 1 10.5058 4.9767 0.4235 17 7 3.6918 3.5407 1.2513 18 6 2.4745 4.1077 1.3656 19 8 1.6985 4.0747 0.4309 20 6 2.0822 4.7712 2.6306 21 7 2.8474 4.8699 3.7197 22 6 2.1930 5.5227 4.6690 23 7 2.5264 5.8703 5.9194 24 6 1.6860 6.5301 6.6819 25 6 0.4186 6.8837 6.1987 26 6 0.0703 6.5369 4.9340 27 7 0.9636 5.8536 4.1665 28 7 0.9236 5.3621 2.8550 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9336 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 5.8903 2.4797 -1.0951 39 1 6.0350 2.2741 0.6671 40 1 5.4808 4.9909 0.1309 41 1 7.4046 7.7113 0.2921 42 1 4.3110 3.5669 1.9975 43 1 1.9727 6.8020 7.6870 44 1 -0.2731 7.4262 6.8261 45 1 -0.9009 6.7997 4.5416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570814775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:22 Heat of formation + Delta-G solvation = 108.354309 kcal Electronic energy + Delta-G solvation = -28282.635162 eV Core-core repulsion = 24338.202915 eV Total energy + Delta-G solvation = -3944.432247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.11126 -39.94491 -38.75862 -36.52233 -34.92930 -34.81202 -33.52781 -31.91245 -31.17376 -30.84211 -30.27177 -27.35763 -25.83064 -24.61450 -24.09278 -23.37386 -22.22054 -20.85352 -20.70959 -20.11313 -18.78571 -18.39117 -17.49279 -16.97026 -16.86218 -16.32443 -16.04566 -15.28598 -14.85818 -14.75383 -14.61704 -13.92335 -13.80043 -13.62339 -13.46617 -13.19309 -12.95414 -12.93916 -12.69792 -12.62574 -12.25645 -12.07707 -11.89652 -11.30346 -11.04259 -10.90080 -10.83325 -10.76595 -10.48894 -10.35191 -10.33709 -10.29699 -10.03409 -9.98107 -9.96025 -9.68633 -9.12095 -8.87123 -8.69962 -6.90882 -5.71973 -3.02113 0.05024 0.34310 1.49921 1.73265 2.82003 2.97922 3.18074 3.46730 3.47075 3.51705 3.53783 3.88177 3.92116 4.35460 4.52059 4.60607 4.78455 4.88255 4.93171 5.09354 5.21026 5.40309 5.42711 5.48438 5.52531 5.60973 5.72136 5.78524 5.85529 5.87816 5.91075 5.96993 6.00837 6.05927 6.18428 6.25387 6.33002 6.44268 6.50210 6.64969 6.69723 6.89040 7.09254 7.46717 7.73123 7.82390 8.32368 8.45108 9.56940 10.12644 10.47540 11.50265 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007003 B = 0.004287 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3997.183124 B = 6530.207931 C = 9942.822496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.127 4.127 5 C 0.138 3.862 6 H 0.092 0.908 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.281 1.281 17 N -0.679 5.679 18 C 0.609 3.391 19 O -0.509 6.509 20 C 0.249 3.751 21 N -0.488 5.488 22 C 0.441 3.559 23 N -0.445 5.445 24 C 0.206 3.794 25 C -0.222 4.222 26 C 0.172 3.828 27 N -0.330 5.330 28 N -0.271 5.271 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.417 0.583 43 H 0.192 0.808 44 H 0.176 0.824 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.100 -4.968 12.880 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.166 4.166 5 C 0.034 3.966 6 H 0.110 0.890 7 C 0.017 3.983 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.330 5.330 18 C 0.389 3.611 19 O -0.382 6.382 20 C -0.035 4.035 21 N -0.221 5.221 22 C 0.080 3.920 23 N -0.159 5.159 24 C 0.018 3.982 25 C -0.247 4.247 26 C 0.035 3.965 27 N -0.111 5.111 28 N -0.104 5.104 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.209 0.791 44 H 0.193 0.807 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.709 -5.567 11.584 21.881 hybrid contribution 0.262 1.117 0.479 1.243 sum -17.447 -4.450 12.063 21.673 Atomic orbital electron populations 1.21746 0.96302 1.00819 1.01862 1.21561 0.95591 0.97602 1.01449 1.21695 0.94833 0.95570 1.03140 1.22001 0.96021 0.95996 1.02626 1.21489 0.96600 0.92573 0.85965 0.88960 1.20979 0.88720 0.89574 0.99061 1.42348 1.05488 1.01933 1.87865 1.19199 0.83588 0.92478 1.42064 0.91073 1.24747 0.97633 0.95692 1.02663 1.69676 1.32881 0.98981 1.56264 0.86190 0.85183 0.77418 0.77374 1.21771 1.21839 1.20710 1.45748 1.14649 1.54673 1.17968 1.16236 0.83155 0.78678 0.83053 1.90837 1.51568 1.58506 1.37319 1.24373 0.88124 0.96077 0.94955 1.70912 1.29175 1.23065 0.98980 1.22719 0.81510 0.95207 0.92559 1.68102 1.33202 1.14621 0.99965 1.23656 0.88154 0.87158 0.99214 1.21994 1.00389 1.06856 0.95449 1.22212 0.95227 0.89289 0.89752 1.49078 1.14211 1.36227 1.11566 1.78925 1.20838 1.20658 0.89999 0.92728 0.93308 0.93077 0.92268 0.92560 0.92110 0.91299 0.90646 0.91616 0.94509 0.95508 0.78005 0.93560 0.74592 0.79107 0.80677 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.46 5.93 -26.73 -0.16 -1.62 16 3 C -0.11 -1.62 3.81 -26.73 -0.10 -1.72 16 4 C -0.13 -1.78 4.89 -26.73 -0.13 -1.91 16 5 C 0.14 2.37 2.42 -67.93 -0.16 2.21 16 6 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 7 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 8 N -0.73 -18.67 5.43 -59.91 -0.33 -19.00 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 13 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.68 -12.18 4.47 -54.66 -0.24 -12.42 16 18 C 0.61 11.47 6.41 -12.20 -0.08 11.39 16 19 O -0.51 -10.22 14.20 5.34 0.08 -10.14 16 20 C 0.25 4.60 7.92 -156.79 -1.24 3.36 16 21 N -0.49 -9.03 10.89 -12.24 -0.13 -9.16 16 22 C 0.44 6.94 8.98 -323.05 -2.90 4.04 16 23 N -0.45 -5.67 10.48 -13.79 -0.14 -5.82 16 24 C 0.21 1.34 11.27 -17.07 -0.19 1.15 16 25 C -0.22 -0.97 10.06 -39.77 -0.40 -1.37 16 26 C 0.17 1.30 11.32 -16.54 -0.19 1.11 16 27 N -0.33 -4.51 3.91 -13.80 -0.05 -4.56 16 28 N -0.27 -4.63 12.78 32.02 0.41 -4.22 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.97 5.65 -51.93 -0.29 0.67 16 35 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.39 10.64 7.33 -40.82 -0.30 10.34 16 41 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.42 7.71 8.27 -40.82 -0.34 7.37 16 43 H 0.19 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.18 -0.05 8.06 -52.49 -0.42 -0.48 16 45 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -37.55 380.60 -10.79 -48.34 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.35 Total: 10.88 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: -5.46 Total: 10.78 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: 0.23 Total: -83.36 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.55 -10.79 -48.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570814775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.690 kcal (2) G-P(sol) polarization free energy of solvation -37.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds