Wall clock time and date at job start Tue Mar 31 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.52996 * 109.46903 * 119.99619 * 2 1 3 5 5 H 1.09000 * 109.47521 * 185.00184 * 4 2 1 6 6 C 1.53003 * 109.47332 * 305.00350 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21611 * 120.00241 * 359.97438 * 9 8 7 11 11 C 1.47319 * 119.99903 * 179.97438 * 9 8 7 12 12 C 1.39013 * 120.90724 * 359.97438 * 11 9 8 13 13 C 1.39709 * 119.29284 * 179.97438 * 12 11 9 14 14 C 1.35259 * 121.08308 * 0.02562 * 13 12 11 15 15 N 1.35714 * 121.57151 * 359.94910 * 14 13 12 16 16 N 1.40212 * 134.08830 * 180.02562 * 15 14 13 17 17 N 1.29018 * 106.95826 * 180.02562 * 16 15 14 18 18 N 1.28594 * 110.78939 * 0.02562 * 17 16 15 19 19 C 1.32044 * 110.21489 * 359.75570 * 18 17 16 20 20 N 1.46505 * 109.47130 * 65.00098 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09003 * 109.47634 * 300.00560 * 1 2 3 30 30 H 1.09004 * 109.47209 * 60.00264 * 1 2 3 31 31 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47301 * 239.99518 * 2 1 3 33 33 H 1.08998 * 109.47742 * 59.99451 * 3 2 1 34 34 H 1.09004 * 109.47296 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47144 * 299.99494 * 3 2 1 36 36 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 37 37 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 38 38 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 39 39 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 40 40 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 41 41 H 1.07999 * 120.34726 * 359.97438 * 12 11 9 42 42 H 1.08002 * 119.46266 * 180.02562 * 13 12 11 43 43 H 1.08001 * 119.21841 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0761 2.4953 7 6 2.0342 -0.7141 3.7478 8 7 1.4495 -0.0969 4.9409 9 6 1.8340 -0.5034 6.1670 10 8 2.6658 -1.3829 6.2830 11 6 1.2464 0.1176 7.3667 12 6 0.2946 1.1247 7.2561 13 6 -0.2408 1.6898 8.4162 14 6 0.1525 1.2732 9.6415 15 7 1.0783 0.2929 9.7955 16 7 1.6649 -0.3291 10.9067 17 7 2.4947 -1.2064 10.4524 18 7 2.4986 -1.2081 9.1665 19 6 1.6451 -0.3117 8.7065 20 7 1.6523 -2.1328 1.1907 21 6 2.4345 -3.0300 0.5136 22 1 3.3373 -2.6971 0.0232 23 6 2.0702 -4.3685 0.4630 24 7 0.9703 -4.7743 1.0611 25 14 3.1413 -5.5938 -0.4541 26 1 4.3124 -4.8896 -1.0354 27 1 3.6105 -6.6425 0.4868 28 1 2.3520 -6.2232 -1.5432 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8898 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6435 0.9927 2.4928 37 1 0.3509 -0.2308 2.4933 38 1 1.8204 -1.7829 3.7503 39 1 3.1131 -0.5594 3.7498 40 1 0.7857 0.6043 4.8484 41 1 -0.0276 1.4666 6.2836 42 1 -0.9808 2.4720 8.3335 43 1 -0.2809 1.7312 10.5183 44 1 0.8417 -2.4318 1.6315 45 1 0.7156 -5.7096 1.0254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571349521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:46 Heat of formation + Delta-G solvation = 122.110791 kcal Electronic energy + Delta-G solvation = -27889.986296 eV Core-core repulsion = 23946.150575 eV Total energy + Delta-G solvation = -3943.835721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.65034 -39.97387 -38.68304 -37.59891 -34.84191 -34.28668 -33.19188 -32.37010 -31.45714 -30.61927 -29.26050 -26.70703 -26.08065 -24.98550 -24.66648 -23.61964 -22.81242 -21.89902 -21.04101 -19.18824 -18.41249 -17.93516 -17.78275 -17.18669 -17.14906 -16.25464 -15.64461 -15.43586 -14.90185 -14.65295 -14.17905 -14.08303 -13.95195 -13.51786 -13.46215 -13.27165 -13.11801 -13.00629 -12.77889 -12.72757 -12.21736 -12.02790 -11.70469 -11.35324 -11.27702 -11.21745 -10.97578 -10.88307 -10.65362 -10.63773 -10.52337 -10.31349 -10.13956 -10.06171 -9.69746 -9.59599 -9.13016 -8.91485 -8.82995 -6.93081 -5.74586 -3.02787 -0.44994 0.08992 1.25587 1.82772 2.20197 2.87156 3.17044 3.18098 3.46533 3.52620 3.54684 3.57907 3.86832 4.03075 4.37651 4.60340 4.62096 4.85750 5.01072 5.07773 5.15471 5.20348 5.32505 5.37511 5.39854 5.55820 5.64649 5.68395 5.80114 5.86970 5.96976 6.02747 6.12470 6.18750 6.26056 6.31474 6.38236 6.48947 6.64003 6.72721 6.79063 6.99157 7.06403 7.41875 7.74168 8.09579 8.14545 8.43714 9.55762 10.11449 10.45759 11.47887 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.002755 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.860508 B =10160.577178 C =11742.549389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.122 3.878 8 N -0.719 5.719 9 C 0.552 3.448 10 O -0.492 6.492 11 C -0.089 4.089 12 C -0.024 4.024 13 C -0.143 4.143 14 C 0.125 3.875 15 N -0.310 5.310 16 N -0.109 5.109 17 N -0.008 5.008 18 N -0.286 5.286 19 C 0.272 3.728 20 N -0.720 5.720 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.393 0.607 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.184 0.816 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.378 21.612 12.097 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.175 4.175 7 C 0.000 4.000 8 N -0.371 5.371 9 C 0.335 3.665 10 O -0.366 6.366 11 C -0.098 4.098 12 C -0.050 4.050 13 C -0.167 4.167 14 C -0.002 4.002 15 N -0.090 5.090 16 N -0.091 5.091 17 N -0.001 5.001 18 N -0.142 5.142 19 C 0.013 3.987 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.734 3.266 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.228 0.772 41 H 0.181 0.819 42 H 0.192 0.808 43 H 0.201 0.799 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.765 19.948 13.281 24.649 hybrid contribution -0.739 0.128 -0.892 1.165 sum -6.504 20.076 12.389 24.471 Atomic orbital electron populations 1.21742 0.96029 1.02211 0.99486 1.21792 0.95858 0.94483 1.01540 1.21897 1.00544 0.97340 1.00537 1.20147 0.96872 0.85505 0.89932 0.93262 1.22167 1.01185 0.99441 0.94691 1.21567 0.97754 0.99321 0.81371 1.45943 1.44572 1.40982 1.05635 1.17402 0.83162 0.83510 0.82396 1.90972 1.30970 1.28766 1.85868 1.20477 1.00536 0.99581 0.89247 1.22018 0.91043 0.91232 1.00715 1.21009 1.02934 1.02957 0.89761 1.21782 0.89104 0.88139 1.01166 1.49039 1.27519 1.25268 1.07197 1.82811 1.12276 1.10253 1.03800 1.78083 1.09098 1.09357 1.03539 1.75355 1.19129 1.18841 1.00883 1.23652 0.92891 0.92230 0.89952 1.42431 1.28656 1.01347 1.63633 1.19235 1.03571 0.88572 1.25437 0.91201 1.24701 0.97778 0.97119 1.01115 1.69653 1.24653 1.15436 1.48194 0.86180 0.79598 0.81728 0.79055 1.20603 1.21880 1.22048 0.93765 0.94514 0.91645 0.91092 0.93218 0.93282 0.93809 0.91574 0.91191 0.89298 0.91385 0.77224 0.81871 0.80778 0.79909 0.78270 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.59 37.16 0.32 -1.73 16 2 C -0.12 -1.82 2.88 -90.63 -0.26 -2.08 16 3 C -0.15 -1.80 8.95 37.15 0.33 -1.47 16 4 C 0.19 3.25 2.06 -67.93 -0.14 3.11 16 5 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 6 C -0.14 -1.81 4.07 -26.73 -0.11 -1.92 16 7 C 0.12 1.83 5.56 -4.04 -0.02 1.80 16 8 N -0.72 -8.18 5.51 -61.42 -0.34 -8.52 16 9 C 0.55 7.80 7.77 -12.57 -0.10 7.70 16 10 O -0.49 -9.73 16.28 5.27 0.09 -9.65 16 11 C -0.09 -0.95 6.06 -102.71 -0.62 -1.57 16 12 C -0.02 -0.12 9.63 -38.75 -0.37 -0.49 16 13 C -0.14 -0.35 9.92 -40.09 -0.40 -0.75 16 14 C 0.13 0.60 11.15 -16.90 -0.19 0.41 16 15 N -0.31 -3.28 3.94 -10.99 -0.04 -3.32 16 16 N -0.11 -1.45 13.99 60.35 0.84 -0.61 16 17 N -0.01 -0.12 13.36 60.35 0.81 0.68 16 18 N -0.29 -4.91 11.75 32.20 0.38 -4.53 16 19 C 0.27 3.67 7.85 -154.52 -1.21 2.45 16 20 N -0.72 -16.45 4.03 -53.42 -0.22 -16.67 16 21 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 25 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.18 7.75 -51.93 -0.40 0.77 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 0.53 6.46 -51.93 -0.34 0.19 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.70 6.34 -51.93 -0.33 0.37 16 37 H 0.07 0.91 6.65 -51.93 -0.35 0.56 16 38 H 0.09 1.72 7.75 -51.93 -0.40 1.32 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.39 2.70 6.58 -40.82 -0.27 2.43 16 41 H 0.16 0.19 6.49 -52.49 -0.34 -0.15 16 42 H 0.17 -0.33 8.06 -52.49 -0.42 -0.75 16 43 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 44 H 0.38 9.41 7.80 -40.82 -0.32 9.09 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -37.27 376.03 -6.13 -43.40 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.00 Total: 4.39 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -3.02 Total: -1.38 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 2.16 Total: -59.85 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.27 -6.13 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571349521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.516 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds