Wall clock time and date at job start Tue Mar 31 2020 18:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.52996 * 109.46903 * 119.99619 * 2 1 3 5 5 H 1.09000 * 109.47521 * 185.00184 * 4 2 1 6 6 C 1.53003 * 109.47332 * 305.00350 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21611 * 120.00241 * 359.97438 * 9 8 7 11 11 C 1.47319 * 119.99903 * 179.97438 * 9 8 7 12 12 C 1.39013 * 120.90724 * 359.97438 * 11 9 8 13 13 C 1.39709 * 119.29284 * 179.97438 * 12 11 9 14 14 C 1.35259 * 121.08308 * 0.02562 * 13 12 11 15 15 N 1.35714 * 121.57151 * 359.94910 * 14 13 12 16 16 N 1.40212 * 134.08830 * 180.02562 * 15 14 13 17 17 N 1.29018 * 106.95826 * 180.02562 * 16 15 14 18 18 N 1.28594 * 110.78939 * 0.02562 * 17 16 15 19 19 C 1.32044 * 110.21489 * 359.75570 * 18 17 16 20 20 N 1.46505 * 109.47130 * 65.00098 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09003 * 109.47634 * 300.00560 * 1 2 3 30 30 H 1.09004 * 109.47209 * 60.00264 * 1 2 3 31 31 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47301 * 239.99518 * 2 1 3 33 33 H 1.08998 * 109.47742 * 59.99451 * 3 2 1 34 34 H 1.09004 * 109.47296 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47144 * 299.99494 * 3 2 1 36 36 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 37 37 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 38 38 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 39 39 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 40 40 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 41 41 H 1.07999 * 120.34726 * 359.97438 * 12 11 9 42 42 H 1.08002 * 119.46266 * 180.02562 * 13 12 11 43 43 H 1.08001 * 119.21841 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0761 2.4953 7 6 2.0342 -0.7141 3.7478 8 7 1.4495 -0.0969 4.9409 9 6 1.8340 -0.5034 6.1670 10 8 2.6658 -1.3829 6.2830 11 6 1.2464 0.1176 7.3667 12 6 0.2946 1.1247 7.2561 13 6 -0.2408 1.6898 8.4162 14 6 0.1525 1.2732 9.6415 15 7 1.0783 0.2929 9.7955 16 7 1.6649 -0.3291 10.9067 17 7 2.4947 -1.2064 10.4524 18 7 2.4986 -1.2081 9.1665 19 6 1.6451 -0.3117 8.7065 20 7 1.6523 -2.1328 1.1907 21 6 2.4345 -3.0300 0.5136 22 1 3.3373 -2.6971 0.0232 23 6 2.0702 -4.3685 0.4630 24 7 0.9703 -4.7743 1.0611 25 14 3.1413 -5.5938 -0.4541 26 1 4.3124 -4.8896 -1.0354 27 1 3.6105 -6.6425 0.4868 28 1 2.3520 -6.2232 -1.5432 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8898 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6435 0.9927 2.4928 37 1 0.3509 -0.2308 2.4933 38 1 1.8204 -1.7829 3.7503 39 1 3.1131 -0.5594 3.7498 40 1 0.7857 0.6043 4.8484 41 1 -0.0276 1.4666 6.2836 42 1 -0.9808 2.4720 8.3335 43 1 -0.2809 1.7312 10.5183 44 1 0.8417 -2.4318 1.6315 45 1 0.7156 -5.7096 1.0254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571349521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:44 Heat of formation + Delta-G solvation = 92.437146 kcal Electronic energy + Delta-G solvation = -27891.273042 eV Core-core repulsion = 23946.150575 eV Total energy + Delta-G solvation = -3945.122467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.50021 -40.97841 -39.46796 -38.94822 -36.04383 -35.11107 -35.00587 -33.14351 -32.62163 -31.88773 -30.63458 -27.81612 -27.16037 -26.19992 -25.36980 -24.94420 -24.20602 -23.08666 -22.01167 -20.09002 -19.63203 -19.22408 -18.61649 -18.58649 -18.05228 -16.90115 -16.85429 -16.53162 -16.37497 -15.89027 -15.54611 -15.41517 -14.89906 -14.82431 -14.62275 -14.46566 -14.16402 -13.93150 -13.67799 -13.60279 -13.27222 -13.19782 -12.91712 -12.76126 -12.57742 -12.53822 -12.47238 -12.17100 -12.14179 -12.03819 -11.81923 -11.72006 -11.36751 -11.30374 -11.28936 -10.97909 -10.79919 -10.18959 -9.71060 -8.88475 -7.90247 -5.14230 -1.06085 -0.58887 0.58553 0.94927 1.44790 1.47250 1.47601 1.54967 1.94003 2.29322 2.49669 2.58570 2.83701 3.39763 3.44238 3.59731 3.73595 3.97367 4.00096 4.03987 4.14102 4.21996 4.34975 4.38424 4.46042 4.58409 4.62373 4.65209 4.76133 4.86652 4.90100 4.99149 5.02665 5.05214 5.18163 5.27046 5.32977 5.38047 5.40662 5.47866 5.50803 5.56185 5.73843 5.80898 6.33987 6.51383 7.16252 7.20658 7.40572 8.20809 8.40770 9.33249 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.002755 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.860508 B =10160.577178 C =11742.549389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.137 4.137 4 C 0.176 3.824 5 H 0.034 0.966 6 C -0.118 4.118 7 C 0.133 3.867 8 N -0.695 5.695 9 C 0.550 3.450 10 O -0.568 6.568 11 C -0.137 4.137 12 C 0.028 3.972 13 C -0.111 4.111 14 C 0.117 3.883 15 N -0.305 5.305 16 N -0.121 5.121 17 N -0.041 5.041 18 N -0.352 5.352 19 C 0.250 3.750 20 N -0.728 5.728 21 C -0.224 4.224 22 H 0.070 0.930 23 C -0.076 4.076 24 N -0.967 5.967 25 Si 0.958 3.042 26 H -0.268 1.268 27 H -0.302 1.302 28 H -0.294 1.294 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.421 0.579 41 H 0.213 0.787 42 H 0.243 0.757 43 H 0.227 0.773 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.422 27.435 11.825 31.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.195 4.195 4 C 0.068 3.932 5 H 0.053 0.947 6 C -0.156 4.156 7 C 0.009 3.991 8 N -0.348 5.348 9 C 0.336 3.664 10 O -0.447 6.447 11 C -0.147 4.147 12 C 0.003 3.997 13 C -0.133 4.133 14 C -0.008 4.008 15 N -0.085 5.085 16 N -0.105 5.105 17 N -0.034 5.034 18 N -0.210 5.210 19 C -0.007 4.007 20 N -0.368 5.368 21 C -0.356 4.356 22 H 0.088 0.912 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.230 1.230 28 H -0.222 1.222 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.260 0.740 41 H 0.230 0.770 42 H 0.259 0.741 43 H 0.244 0.756 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.833 25.886 12.986 30.278 hybrid contribution 0.040 -1.374 -0.822 1.602 sum -8.793 24.512 12.165 28.742 Atomic orbital electron populations 1.21690 0.95000 1.00362 1.01853 1.21629 0.96638 0.96439 0.98418 1.21824 1.00490 0.94490 1.02693 1.20451 0.96505 0.83183 0.93086 0.94742 1.22034 1.01240 1.01244 0.91078 1.21161 0.97254 0.96905 0.83776 1.45539 1.44530 1.40963 1.03813 1.18003 0.82041 0.82445 0.83879 1.90936 1.34519 1.32284 1.86982 1.20181 1.04709 1.03482 0.86322 1.22784 0.86218 0.86634 1.04081 1.21890 1.01871 1.02297 0.87288 1.23069 0.87173 0.86175 1.04413 1.49156 1.28043 1.25887 1.05439 1.82570 1.12488 1.10424 1.05006 1.77985 1.10706 1.10944 1.03768 1.75159 1.22302 1.22017 1.01535 1.23876 0.92939 0.92223 0.91616 1.42583 1.27801 1.03463 1.62966 1.19563 1.03203 0.89232 1.23643 0.91213 1.25367 0.99321 0.98955 1.03193 1.69787 1.26481 1.15040 1.50556 0.85285 0.78578 0.79583 0.77693 1.19214 1.22993 1.22176 0.90543 0.92972 0.95589 0.94859 0.90226 0.93439 0.92459 0.86864 0.89863 0.94665 0.93181 0.73979 0.77006 0.74097 0.75620 0.79478 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.59 71.98 0.62 -2.98 16 2 C -0.11 -3.28 2.88 -10.80 -0.03 -3.31 16 3 C -0.14 -2.82 8.95 71.98 0.64 -2.18 16 4 C 0.18 6.04 2.06 44.99 0.09 6.13 16 5 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 6 C -0.12 -2.81 4.07 30.60 0.12 -2.69 16 7 C 0.13 3.99 5.56 86.38 0.48 4.48 16 8 N -0.69 -14.56 5.51 -466.50 -2.57 -17.13 16 9 C 0.55 15.81 7.77 86.63 0.67 16.48 16 10 O -0.57 -24.61 16.28 -4.07 -0.07 -24.68 16 11 C -0.14 -2.70 6.06 -18.63 -0.11 -2.82 16 12 C 0.03 0.09 9.63 22.81 0.22 0.31 16 13 C -0.11 0.32 9.92 21.94 0.22 0.54 16 14 C 0.12 0.52 11.15 83.41 0.93 1.45 16 15 N -0.30 -6.09 3.94 -188.68 -0.74 -6.83 16 16 N -0.12 -3.37 13.99 37.02 0.52 -2.85 16 17 N -0.04 -1.46 13.36 37.02 0.49 -0.96 16 18 N -0.35 -13.31 11.75 -52.05 -0.61 -13.92 16 19 C 0.25 6.94 7.85 135.75 1.07 8.01 16 20 N -0.73 -34.34 4.03 -322.93 -1.30 -35.64 16 21 C -0.22 -12.29 9.93 84.04 0.83 -11.46 16 22 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 24 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 25 Si 0.96 47.80 29.55 68.60 2.03 49.83 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 28 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 29 H 0.08 1.57 6.46 -2.39 -0.02 1.56 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.02 0.90 7.75 -2.39 -0.02 0.88 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.18 6.46 -2.39 -0.02 1.16 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.11 1.71 6.34 -2.39 -0.02 1.70 16 37 H 0.08 1.84 6.65 -2.39 -0.02 1.82 16 38 H 0.03 1.45 7.75 -2.39 -0.02 1.44 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.42 3.63 6.58 -92.71 -0.61 3.02 16 41 H 0.21 -1.42 6.49 -2.91 -0.02 -1.44 16 42 H 0.24 -3.66 8.06 -2.91 -0.02 -3.68 16 43 H 0.23 -1.00 8.06 -2.91 -0.02 -1.02 16 44 H 0.37 19.03 7.80 -92.71 -0.72 18.31 16 45 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -99.19 376.03 3.97 -95.22 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -0.29 Total: 8.57 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.22 Total: 8.00 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -3.93 Total: -136.95 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -99.19 3.97 -95.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571349521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.660 kcal (2) G-P(sol) polarization free energy of solvation -99.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds