Wall clock time and date at job start Tue Mar 31 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21561 * 120.00108 * 359.97438 * 9 8 7 11 11 C 1.47729 * 119.99834 * 179.97438 * 9 8 7 12 12 C 1.40120 * 120.35073 * 0.02562 * 11 9 8 13 13 N 1.31263 * 121.14710 * 179.97438 * 12 11 9 14 14 C 1.32718 * 121.80193 * 0.02562 * 13 12 11 15 15 N 1.37112 * 133.40825 * 179.97438 * 14 13 12 16 16 H 0.97003 * 126.58684 * 0.02583 * 15 14 13 17 17 N 1.40187 * 106.82429 * 179.97438 * 15 14 13 18 18 N 1.28673 * 109.50810 * 0.02562 * 17 15 14 19 19 C 1.35331 * 109.99926 * 359.97438 * 18 17 15 20 20 C 1.39427 * 120.34921 * 179.72018 * 11 9 8 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.08001 * 119.42659 * 359.97438 * 12 11 9 43 43 H 1.07999 * 120.95290 * 359.97438 * 20 11 9 44 44 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3104 -4.6047 4.5677 11 6 1.1956 -6.4221 3.6137 12 6 0.4778 -6.9192 2.5177 13 7 0.0335 -8.1543 2.5009 14 6 0.2408 -8.9860 3.5142 15 7 -0.1056 -10.2920 3.7471 16 1 -0.6049 -10.8728 3.1518 17 7 0.4015 -10.6271 5.0104 18 7 1.0092 -9.6104 5.5130 19 6 0.9531 -8.5664 4.6538 20 6 1.4457 -7.2578 4.7013 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2359 -0.6835 1.2730 26 14 6.5130 1.8124 2.4451 27 1 5.5483 2.8366 2.9205 28 1 7.3617 1.3669 3.5792 29 1 7.3717 2.3968 1.3839 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 0.2868 -6.2750 1.6722 43 1 2.0006 -6.9040 5.5576 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571350009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:31 Heat of formation + Delta-G solvation = 90.657206 kcal Electronic energy + Delta-G solvation = -27476.125883 eV Core-core repulsion = 23530.926232 eV Total energy + Delta-G solvation = -3945.199651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.82468 -40.17417 -38.53915 -37.47657 -34.93368 -34.43150 -33.06915 -32.17525 -31.74486 -30.72062 -29.40951 -26.51109 -25.79556 -25.13698 -24.33327 -23.14281 -22.89250 -21.21071 -21.10494 -19.31030 -19.14904 -18.74749 -17.35902 -17.17064 -16.80491 -16.57939 -15.54977 -15.46966 -14.94164 -14.49092 -14.10057 -13.99894 -13.91528 -13.71770 -13.53404 -13.39331 -13.22565 -12.97204 -12.76177 -12.41457 -12.03083 -11.98899 -11.73131 -11.64623 -11.25510 -10.92483 -10.79728 -10.66300 -10.57223 -10.41001 -10.25311 -10.04392 -9.98251 -9.81938 -9.77102 -9.53216 -9.46798 -8.96900 -8.83486 -6.94298 -5.75907 -3.03436 -0.26806 0.18945 1.52134 1.59571 2.52859 2.91058 3.33485 3.40060 3.44354 3.50598 3.52563 3.76071 3.80282 4.15373 4.22643 4.59242 4.60406 4.83195 5.15994 5.25198 5.32640 5.35268 5.45563 5.52448 5.64082 5.67666 5.68789 5.87466 5.96969 6.14191 6.16849 6.18677 6.24397 6.32929 6.37703 6.47797 6.61582 6.65196 6.68468 6.80665 6.96483 7.10379 7.28381 7.31690 7.42701 7.73385 8.11762 8.42311 9.54148 10.10279 10.44861 11.46578 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.002354 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.402815 B =11892.711462 C =13203.906306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.185 3.815 5 H 0.050 0.950 6 C -0.137 4.137 7 C 0.122 3.878 8 N -0.720 5.720 9 C 0.563 3.437 10 O -0.523 6.523 11 C -0.202 4.202 12 C 0.214 3.786 13 N -0.489 5.489 14 C 0.293 3.707 15 N -0.484 5.484 16 H 0.454 0.546 17 N 0.018 4.982 18 N -0.190 5.190 19 C -0.074 4.074 20 C 0.084 3.916 21 N -0.721 5.721 22 C -0.231 4.231 23 H 0.072 0.928 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.900 3.100 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.395 0.605 42 H 0.180 0.820 43 H 0.168 0.832 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.732 -14.782 -0.475 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.068 0.932 6 C -0.176 4.176 7 C 0.000 4.000 8 N -0.371 5.371 9 C 0.348 3.652 10 O -0.400 6.400 11 C -0.211 4.211 12 C 0.040 3.960 13 N -0.203 5.203 14 C 0.048 3.952 15 N -0.209 5.209 16 H 0.302 0.698 17 N 0.035 4.965 18 N -0.071 5.071 19 C -0.199 4.199 20 C 0.053 3.947 21 N -0.362 5.362 22 C -0.362 4.362 23 H 0.090 0.910 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.732 3.268 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.229 0.771 42 H 0.197 0.803 43 H 0.186 0.814 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.511 -15.769 0.740 22.843 hybrid contribution 0.477 0.952 -0.729 1.291 sum -16.034 -14.816 0.011 21.831 Atomic orbital electron populations 1.21937 0.97144 1.00613 1.00774 1.21775 0.93262 0.97750 1.00472 1.21831 1.04275 0.94857 0.98835 1.20185 0.86049 0.90995 0.95310 0.93235 1.22152 1.00593 0.98370 0.96472 1.21547 1.01534 0.78505 0.98458 1.46005 1.57416 1.14150 1.19498 1.17653 0.80169 0.84033 0.83382 1.90860 1.39788 1.75016 1.34308 1.20880 1.06216 0.96827 0.97136 1.23101 0.87635 0.89309 0.95906 1.66690 1.23949 1.03878 1.25753 1.19590 0.95442 0.87535 0.92673 1.47541 1.46975 1.08788 1.17578 0.69772 1.81756 1.08086 1.16967 0.89707 1.74917 1.12005 0.96803 1.23379 1.20411 1.08311 0.96762 0.94412 1.21135 0.88972 0.87327 0.97288 1.42450 0.98896 1.21094 1.73770 1.19227 0.88768 0.96253 1.31963 0.90970 1.24708 0.96515 0.97696 1.01988 1.69654 1.06754 1.29806 1.51733 0.86218 0.80110 0.82184 0.78316 1.20568 1.21939 1.22044 0.93274 0.93847 0.93199 0.92188 0.89490 0.95235 0.94113 0.91404 0.91500 0.89311 0.91420 0.77063 0.80330 0.81430 0.78305 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.85 37.16 0.33 -1.51 16 2 C -0.11 -1.76 2.69 -90.62 -0.24 -2.01 16 3 C -0.14 -2.47 8.26 37.16 0.31 -2.16 16 4 C 0.19 3.19 2.02 -67.93 -0.14 3.06 16 5 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 6 C -0.14 -1.81 4.65 -26.73 -0.12 -1.94 16 7 C 0.12 1.76 5.56 -4.04 -0.02 1.73 16 8 N -0.72 -7.89 5.51 -61.29 -0.34 -8.23 16 9 C 0.56 7.15 7.77 -12.38 -0.10 7.06 16 10 O -0.52 -9.03 16.39 5.31 0.09 -8.94 16 11 C -0.20 -1.99 5.88 -104.87 -0.62 -2.61 16 12 C 0.21 1.65 10.69 -17.09 -0.18 1.46 16 13 N -0.49 -4.36 10.37 -12.03 -0.12 -4.48 16 14 C 0.29 2.82 8.49 -155.93 -1.32 1.49 16 15 N -0.48 -3.76 7.52 31.15 0.23 -3.53 16 16 H 0.45 1.87 8.96 -182.53 -1.64 0.23 16 17 N 0.02 0.18 13.82 60.35 0.83 1.01 16 18 N -0.19 -2.17 12.40 32.17 0.40 -1.77 16 19 C -0.07 -0.79 7.27 -84.73 -0.62 -1.41 16 20 C 0.08 0.87 9.75 -38.52 -0.38 0.50 16 21 N -0.72 -16.14 4.45 -53.42 -0.24 -16.38 16 22 C -0.23 -5.91 7.57 -15.06 -0.11 -6.02 16 23 H 0.07 1.82 7.40 -52.49 -0.39 1.44 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 26 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 6.32 -51.93 -0.33 0.21 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.72 6.17 -51.93 -0.32 0.40 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.65 7.75 -51.93 -0.40 1.25 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.39 2.81 6.51 -40.82 -0.27 2.55 16 42 H 0.18 0.73 6.39 -52.49 -0.34 0.40 16 43 H 0.17 1.70 7.71 -52.49 -0.40 1.30 16 44 H 0.38 9.28 7.80 -40.82 -0.32 8.97 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -32.68 373.78 -8.35 -41.03 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.23 Total: 7.94 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.31 Total: -2.81 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 1.49 Total: -59.78 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.68 -8.35 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571350009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.691 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds