Wall clock time and date at job start Tue Mar 31 2020 18:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21561 * 120.00108 * 359.97438 * 9 8 7 11 11 C 1.47729 * 119.99834 * 179.97438 * 9 8 7 12 12 C 1.40120 * 120.35073 * 0.02562 * 11 9 8 13 13 N 1.31263 * 121.14710 * 179.97438 * 12 11 9 14 14 C 1.32718 * 121.80193 * 0.02562 * 13 12 11 15 15 N 1.37112 * 133.40825 * 179.97438 * 14 13 12 16 16 H 0.97003 * 126.58684 * 0.02583 * 15 14 13 17 17 N 1.40187 * 106.82429 * 179.97438 * 15 14 13 18 18 N 1.28673 * 109.50810 * 0.02562 * 17 15 14 19 19 C 1.35331 * 109.99926 * 359.97438 * 18 17 15 20 20 C 1.39427 * 120.34921 * 179.72018 * 11 9 8 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.08001 * 119.42659 * 359.97438 * 12 11 9 43 43 H 1.07999 * 120.95290 * 359.97438 * 20 11 9 44 44 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3104 -4.6047 4.5677 11 6 1.1956 -6.4221 3.6137 12 6 0.4778 -6.9192 2.5177 13 7 0.0335 -8.1543 2.5009 14 6 0.2408 -8.9860 3.5142 15 7 -0.1056 -10.2920 3.7471 16 1 -0.6049 -10.8728 3.1518 17 7 0.4015 -10.6271 5.0104 18 7 1.0092 -9.6104 5.5130 19 6 0.9531 -8.5664 4.6538 20 6 1.4457 -7.2578 4.7013 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2359 -0.6835 1.2730 26 14 6.5130 1.8124 2.4451 27 1 5.5483 2.8366 2.9205 28 1 7.3617 1.3669 3.5792 29 1 7.3717 2.3968 1.3839 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 0.2868 -6.2750 1.6722 43 1 2.0006 -6.9040 5.5576 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571350009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:29 Heat of formation + Delta-G solvation = 66.017846 kcal Electronic energy + Delta-G solvation = -27477.194326 eV Core-core repulsion = 23530.926232 eV Total energy + Delta-G solvation = -3946.268094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.57345 -41.14099 -39.42923 -38.82778 -36.09967 -35.20489 -34.85661 -33.02744 -32.78713 -31.97086 -30.84631 -27.73321 -27.06551 -25.98646 -25.48368 -24.44431 -23.89494 -22.45285 -22.09075 -20.63303 -19.89175 -19.69312 -19.02226 -18.13002 -17.68685 -17.33758 -16.90603 -16.59168 -16.37497 -15.67255 -15.44647 -15.23658 -15.05015 -14.99379 -14.51820 -14.39544 -14.38143 -14.10050 -13.75964 -13.45505 -13.18558 -13.14686 -12.87218 -12.85158 -12.72528 -12.61192 -12.39591 -12.12727 -11.93675 -11.83363 -11.70690 -11.47325 -11.25363 -11.11957 -10.79338 -10.70337 -10.55844 -10.37808 -10.00833 -8.84736 -7.84898 -5.08110 -1.00600 -0.59301 0.83504 0.86994 1.47605 1.49781 1.57128 1.62567 1.95379 2.49040 2.62254 2.68231 3.01439 3.05430 3.40096 3.49100 3.55087 3.75055 3.99106 4.02349 4.11517 4.24687 4.38090 4.46120 4.49530 4.60424 4.66257 4.77244 4.89393 4.90906 4.91941 5.03665 5.11287 5.21860 5.31461 5.34539 5.42467 5.49811 5.52179 5.63791 5.64150 5.78109 5.86273 6.26281 6.38701 6.49968 6.55029 7.17575 7.45615 8.24186 8.44766 9.38910 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.002354 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.402815 B =11892.711462 C =13203.906306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.177 3.823 5 H 0.040 0.960 6 C -0.122 4.122 7 C 0.132 3.868 8 N -0.700 5.700 9 C 0.565 3.435 10 O -0.577 6.577 11 C -0.200 4.200 12 C 0.231 3.769 13 N -0.487 5.487 14 C 0.291 3.709 15 N -0.463 5.463 16 H 0.470 0.530 17 N 0.012 4.988 18 N -0.215 5.215 19 C -0.089 4.089 20 C 0.078 3.922 21 N -0.730 5.730 22 C -0.205 4.205 23 H 0.074 0.926 24 C -0.080 4.080 25 N -0.969 5.969 26 Si 0.951 3.049 27 H -0.267 1.267 28 H -0.303 1.303 29 H -0.299 1.299 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.418 0.582 42 H 0.222 0.778 43 H 0.160 0.840 44 H 0.372 0.628 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.079 -15.286 -2.194 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.197 4.197 4 C 0.068 3.932 5 H 0.058 0.942 6 C -0.160 4.160 7 C 0.009 3.991 8 N -0.352 5.352 9 C 0.351 3.649 10 O -0.457 6.457 11 C -0.209 4.209 12 C 0.057 3.943 13 N -0.201 5.201 14 C 0.045 3.955 15 N -0.191 5.191 16 H 0.322 0.678 17 N 0.029 4.971 18 N -0.096 5.096 19 C -0.215 4.215 20 C 0.047 3.953 21 N -0.369 5.369 22 C -0.338 4.338 23 H 0.092 0.908 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.783 3.217 27 H -0.192 1.192 28 H -0.231 1.231 29 H -0.226 1.226 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.257 0.743 42 H 0.238 0.762 43 H 0.178 0.822 44 H 0.204 0.796 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.960 -16.296 -1.014 25.787 hybrid contribution 1.390 1.105 -0.218 1.789 sum -18.570 -15.190 -1.232 24.023 Atomic orbital electron populations 1.21858 0.93618 1.02638 1.01541 1.21642 0.96091 0.95993 0.98951 1.21778 1.01505 0.96643 0.99787 1.20473 0.83027 0.94000 0.95686 0.94206 1.22030 1.02976 0.95260 0.95752 1.21182 0.98633 0.80332 0.98980 1.45697 1.56863 1.12691 1.19951 1.18015 0.79160 0.84958 0.82741 1.90843 1.42253 1.76200 1.36405 1.20614 1.07211 0.95051 0.98059 1.23676 0.85590 0.89184 0.95818 1.66864 1.24096 1.04029 1.25077 1.19748 0.95141 0.88084 0.92493 1.47522 1.46043 1.08466 1.17045 0.67798 1.81696 1.08129 1.16731 0.90508 1.74905 1.13038 0.97355 1.24261 1.20501 1.09157 0.96765 0.95040 1.21151 0.89022 0.87620 0.97523 1.42633 1.01275 1.19726 1.73287 1.19501 0.88823 0.96493 1.28942 0.90807 1.25321 0.97717 0.99909 1.04195 1.69784 1.06140 1.31647 1.54590 0.85366 0.78985 0.80224 0.77109 1.19153 1.23070 1.22633 0.92988 0.92683 0.90558 0.92686 0.93649 0.93311 0.94161 0.87131 0.90552 0.94088 0.92553 0.74284 0.76220 0.82224 0.79579 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.85 71.98 0.64 -2.20 16 2 C -0.11 -3.08 2.69 -10.80 -0.03 -3.11 16 3 C -0.14 -4.71 8.26 71.98 0.59 -4.12 16 4 C 0.18 5.82 2.02 44.99 0.09 5.91 16 5 H 0.04 1.40 8.08 -2.39 -0.02 1.38 16 6 C -0.12 -2.86 4.65 30.60 0.14 -2.72 16 7 C 0.13 3.69 5.56 86.38 0.48 4.18 16 8 N -0.70 -13.80 5.51 -466.11 -2.57 -16.37 16 9 C 0.56 13.91 7.77 86.75 0.67 14.58 16 10 O -0.58 -20.53 16.39 -3.91 -0.06 -20.60 16 11 C -0.20 -3.66 5.88 -20.03 -0.12 -3.77 16 12 C 0.23 2.76 10.69 85.23 0.91 3.68 16 13 N -0.49 -7.15 10.37 -191.97 -1.99 -9.14 16 14 C 0.29 5.03 8.49 134.01 1.14 6.17 16 15 N -0.46 -6.35 7.52 -55.37 -0.42 -6.77 16 16 H 0.47 2.79 8.96 -213.26 -1.91 0.87 16 17 N 0.01 0.24 13.82 37.02 0.51 0.75 16 18 N -0.21 -4.89 12.40 -52.14 -0.65 -5.53 16 19 C -0.09 -1.86 7.27 39.63 0.29 -1.57 16 20 C 0.08 1.61 9.75 22.96 0.22 1.83 16 21 N -0.73 -32.96 4.45 -322.93 -1.44 -34.39 16 22 C -0.21 -10.66 7.57 84.04 0.64 -10.03 16 23 H 0.07 3.75 7.40 -2.91 -0.02 3.73 16 24 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 25 N -0.97 -58.51 13.06 21.65 0.28 -58.22 16 26 Si 0.95 46.34 29.55 68.60 2.03 48.37 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 29 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.17 6.32 -2.39 -0.02 1.16 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.90 6.01 -2.39 -0.01 1.88 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.72 6.17 -2.39 -0.01 1.70 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.56 7.75 -2.39 -0.02 1.55 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.42 4.15 6.51 -92.71 -0.60 3.55 16 42 H 0.22 0.61 6.39 -2.91 -0.02 0.60 16 43 H 0.16 3.47 7.71 -2.91 -0.02 3.45 16 44 H 0.37 18.42 7.80 -92.71 -0.72 17.70 16 45 H 0.24 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -75.39 373.78 -0.33 -75.72 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -2.17 Total: 21.37 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.14 Total: 4.81 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -6.26 Total: -129.68 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.06 Total: -20.60 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.39 -0.33 -75.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571350009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.740 kcal (2) G-P(sol) polarization free energy of solvation -75.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds