Wall clock time and date at job start Tue Mar 31 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 C 1.53001 * 109.47026 * 240.00266 * 2 1 3 5 5 C 1.52996 * 109.47265 * 120.00357 * 2 1 3 6 6 H 1.08994 * 109.47223 * 179.97438 * 5 2 1 7 7 C 1.53001 * 109.47024 * 299.99909 * 5 2 1 8 8 N 1.46505 * 109.47139 * 175.00245 * 7 5 2 9 9 C 1.36934 * 120.00143 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99923 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99913 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99594 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00211 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47099 * 90.00098 * 13 11 9 15 15 H 1.48501 * 109.47295 * 209.99859 * 13 11 9 16 16 H 1.48496 * 109.47245 * 330.00513 * 13 11 9 17 17 N 1.46503 * 109.47119 * 59.99947 * 5 2 1 18 18 C 1.34773 * 120.00056 * 85.00280 * 17 5 2 19 19 O 1.21553 * 120.00028 * 359.97438 * 18 17 5 20 20 C 1.47875 * 120.00063 * 180.02562 * 18 17 5 21 21 C 1.39448 * 121.11292 * 359.97438 * 20 18 17 22 22 C 1.38625 * 119.37463 * 179.97438 * 21 20 18 23 23 N 1.31582 * 121.63344 * 359.97438 * 22 21 20 24 24 C 1.32205 * 121.86786 * 0.02562 * 23 22 21 25 25 N 1.37212 * 134.67144 * 179.97438 * 24 23 22 26 26 H 0.97000 * 125.86811 * 0.02562 * 25 24 23 27 27 N 1.28776 * 108.26395 * 180.02562 * 25 24 23 28 28 N 1.28693 * 111.75470 * 0.02562 * 27 25 24 29 29 C 1.34394 * 109.15559 * 359.97438 * 28 27 25 30 30 H 1.08997 * 109.46928 * 299.99539 * 1 2 3 31 31 H 1.08995 * 109.47260 * 59.99523 * 1 2 3 32 32 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47033 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47442 * 300.00366 * 3 2 1 35 35 H 1.08997 * 109.46841 * 60.00408 * 3 2 1 36 36 H 1.08997 * 109.47491 * 300.00113 * 4 2 1 37 37 H 1.09004 * 109.46974 * 59.99819 * 4 2 1 38 38 H 1.09002 * 109.47385 * 179.97438 * 4 2 1 39 39 H 1.08997 * 109.47256 * 295.00011 * 7 5 2 40 40 H 1.09000 * 109.47360 * 55.00431 * 7 5 2 41 41 H 0.96997 * 119.99586 * 359.97438 * 8 7 5 42 42 H 0.97001 * 120.00291 * 180.02562 * 12 11 9 43 43 H 0.97001 * 119.99879 * 264.99632 * 17 5 2 44 44 H 1.08005 * 120.31592 * 359.95757 * 21 20 18 45 45 H 1.08002 * 119.18001 * 179.72356 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 3.1299 -0.7217 1.2489 7 6 1.5300 -0.0001 2.4984 8 7 1.9177 -0.7567 3.6916 9 6 1.5682 -0.3012 4.9347 10 1 1.0071 0.6161 5.0357 11 6 1.9351 -1.0185 6.0652 12 7 1.5996 -0.5803 7.2601 13 14 2.9048 -2.6054 5.8905 14 1 4.3584 -2.3024 5.9150 15 1 2.5701 -3.5163 7.0146 16 1 2.5571 -3.2589 4.6033 17 7 1.5517 -2.1026 1.2491 18 6 2.2285 -3.0565 0.5796 19 8 3.2438 -2.7709 -0.0246 20 6 1.7352 -4.4506 0.5791 21 6 0.5730 -4.8040 1.2638 22 6 0.1430 -6.1217 1.2387 23 7 0.8046 -7.0511 0.5831 24 6 1.9126 -6.7794 -0.0849 25 7 2.7906 -7.5175 -0.8380 26 1 2.7250 -8.4684 -1.0181 27 7 3.7167 -6.7309 -1.2645 28 7 3.5383 -5.5217 -0.8620 29 6 2.4236 -5.4660 -0.1133 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 1.9646 0.9984 2.5444 40 1 0.4437 0.0781 2.4549 41 1 2.4212 -1.5808 3.6008 42 1 1.8562 -1.0812 8.0501 43 1 0.7413 -2.3305 1.7310 44 1 0.0132 -4.0583 1.8088 45 1 -0.7551 -6.3928 1.7738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571628092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:02 Heat of formation + Delta-G solvation = 108.976420 kcal Electronic energy + Delta-G solvation = -29454.917752 eV Core-core repulsion = 25510.512482 eV Total energy + Delta-G solvation = -3944.405270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.66642 -40.46563 -39.16437 -37.50460 -34.66880 -34.41566 -33.61161 -32.08522 -31.27427 -31.06070 -28.22598 -27.20332 -26.94586 -25.69864 -24.16187 -23.93477 -23.07587 -21.50961 -21.10642 -19.17069 -18.98023 -18.53966 -17.80543 -17.40248 -16.87853 -16.02032 -15.74860 -15.59763 -15.07508 -14.65610 -14.22712 -14.14661 -13.92747 -13.65397 -13.40951 -13.19757 -13.07470 -12.83198 -12.58204 -12.32623 -12.07587 -11.92660 -11.89850 -11.77324 -11.58792 -11.44585 -11.25160 -10.91067 -10.81104 -10.61314 -10.37865 -10.30987 -10.04381 -9.67279 -9.66588 -9.58999 -9.36164 -8.97670 -8.79808 -7.31196 -5.83713 -3.19891 -0.22691 0.56627 1.84606 1.93794 2.70711 2.98409 3.30137 3.36389 3.41730 3.44607 3.49996 3.94295 4.14433 4.26987 4.47508 4.52667 4.77071 4.86655 4.93522 5.05928 5.16572 5.20060 5.38052 5.43915 5.45326 5.57062 5.68129 5.75397 5.82238 5.84144 5.86275 5.96990 6.05748 6.08631 6.22567 6.28251 6.30660 6.34913 6.39611 6.52127 6.62245 6.77197 7.15763 7.54906 7.89513 7.91634 8.22776 8.34982 9.13573 9.85887 10.05025 11.34415 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.004826 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.475439 B = 5800.541742 C = 7703.263704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.142 4.142 4 C -0.131 4.131 5 C 0.145 3.855 6 H 0.091 0.909 7 C 0.146 3.854 8 N -0.755 5.755 9 C -0.246 4.246 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.279 1.279 17 N -0.703 5.703 18 C 0.549 3.451 19 O -0.499 6.499 20 C -0.006 4.006 21 C -0.140 4.140 22 C 0.164 3.836 23 N -0.461 5.461 24 C 0.213 3.787 25 N -0.407 5.407 26 H 0.457 0.543 27 N -0.001 5.001 28 N -0.207 5.207 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.403 0.597 44 H 0.161 0.839 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.295 -9.711 -17.487 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.188 4.188 5 C 0.041 3.959 6 H 0.109 0.891 7 C 0.019 3.981 8 N -0.401 5.401 9 C -0.376 4.376 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.579 5.579 13 Si 0.711 3.289 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.205 1.205 17 N -0.355 5.355 18 C 0.333 3.667 19 O -0.373 6.373 20 C -0.022 4.022 21 C -0.164 4.164 22 C -0.008 4.008 23 N -0.175 5.175 24 C -0.031 4.031 25 N -0.137 5.137 26 H 0.305 0.695 27 N 0.016 4.984 28 N -0.083 5.083 29 C -0.126 4.126 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.239 0.761 44 H 0.179 0.821 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.544 -10.028 -18.616 21.440 hybrid contribution -0.380 -1.345 0.859 1.641 sum -3.924 -11.373 -17.758 21.449 Atomic orbital electron populations 1.21925 0.94522 1.01605 1.01927 1.20892 0.95972 0.95757 0.95077 1.21893 1.01286 0.94734 1.02012 1.21896 1.01808 0.99470 0.95612 1.21437 1.00126 0.79383 0.94977 0.89113 1.21100 0.98061 0.94810 0.84177 1.42721 1.67927 1.27199 1.02303 1.19030 1.29782 1.07132 0.81619 0.89070 1.24635 1.00504 0.98451 0.95115 1.69692 1.51058 1.40203 0.96943 0.86629 0.80800 0.84731 0.76745 1.21089 1.21705 1.20485 1.45897 1.28992 1.08670 1.51945 1.17786 0.84543 0.83845 0.80486 1.90868 1.23253 1.81445 1.41715 1.19783 0.93761 0.93545 0.95132 1.22527 0.95846 0.99065 0.98939 1.22880 0.97636 0.87487 0.92796 1.66326 1.05055 1.37867 1.08237 1.19877 0.94359 0.89541 0.99296 1.44677 1.17878 1.13005 1.38171 0.69522 1.78252 1.09011 0.96516 1.14644 1.75576 1.13760 1.08249 1.10677 1.20110 0.96322 0.93644 1.02552 0.91674 0.93007 0.92967 0.92464 0.92730 0.91716 0.93141 0.93796 0.91815 0.93582 0.94379 0.80518 0.92995 0.76136 0.82106 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.97 37.16 0.30 -1.27 16 2 C -0.08 -0.94 0.62 -154.51 -0.10 -1.03 16 3 C -0.14 -1.64 8.12 37.16 0.30 -1.34 16 4 C -0.13 -1.72 6.99 37.16 0.26 -1.46 16 5 C 0.15 2.16 1.69 -67.93 -0.11 2.04 16 6 H 0.09 1.55 7.57 -51.93 -0.39 1.16 16 7 C 0.15 2.50 5.10 -4.04 -0.02 2.48 16 8 N -0.76 -16.59 5.24 -59.90 -0.31 -16.91 16 9 C -0.25 -6.57 10.47 -15.06 -0.16 -6.73 16 10 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 11 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 12 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 13 Si 0.88 21.69 27.74 -169.99 -4.71 16.98 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 17 N -0.70 -9.80 3.60 -54.74 -0.20 -10.00 16 18 C 0.55 8.43 6.15 -12.32 -0.08 8.35 16 19 O -0.50 -9.12 13.39 5.32 0.07 -9.04 16 20 C -0.01 -0.08 5.92 -104.51 -0.62 -0.70 16 21 C -0.14 -1.38 9.61 -38.99 -0.37 -1.75 16 22 C 0.16 1.41 11.14 -17.52 -0.20 1.22 16 23 N -0.46 -4.92 10.35 -12.38 -0.13 -5.05 16 24 C 0.21 2.58 8.56 -156.21 -1.34 1.24 16 25 N -0.41 -4.09 7.06 31.11 0.22 -3.87 16 26 H 0.46 2.56 8.96 -190.25 -1.71 0.86 16 27 N 0.00 -0.02 13.29 60.35 0.80 0.79 16 28 N -0.21 -3.30 11.92 32.23 0.38 -2.92 16 29 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 30 H 0.06 0.73 6.32 -51.93 -0.33 0.40 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.55 7.60 -51.93 -0.39 0.15 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 36 H 0.05 0.72 5.77 -51.93 -0.30 0.42 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.95 7.53 -51.93 -0.39 0.55 16 39 H 0.05 0.81 6.71 -51.93 -0.35 0.47 16 40 H 0.04 0.63 6.17 -51.93 -0.32 0.31 16 41 H 0.36 8.04 5.20 -40.82 -0.21 7.83 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.40 4.95 6.75 -40.82 -0.28 4.67 16 44 H 0.16 1.18 6.53 -52.48 -0.34 0.84 16 45 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -35.11 360.76 -7.54 -42.65 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.06 Total: 8.84 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.82 Total: 0.66 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: 1.54 Total: -65.52 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.11 -7.54 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571628092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.623 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds