Wall clock time and date at job start Tue Mar 31 2020 17:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38049 * 126.29604 * 2 1 4 4 C 1.47416 * 126.41452 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99906 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00236 * 180.02562 * 4 3 2 7 7 C 1.40112 * 120.00163 * 180.02562 * 6 4 3 8 8 N 1.31225 * 125.97630 * 0.17325 * 7 6 4 9 9 N 1.40070 * 108.17035 * 180.22825 * 8 7 6 10 10 C 1.46504 * 125.97779 * 179.74021 * 9 8 7 11 11 C 1.34968 * 108.05105 * 359.75421 * 9 8 7 12 12 C 1.50702 * 126.07179 * 179.97438 * 11 9 8 13 13 C 1.35242 * 107.86337 * 0.02562 * 11 9 8 14 14 C 1.50697 * 126.06694 * 179.97438 * 13 11 9 15 15 N 1.46905 * 109.47066 * 89.99857 * 14 13 11 16 16 C 1.41295 * 107.17273 * 180.24618 * 3 2 1 17 17 N 1.30451 * 108.02018 * 359.58573 * 16 3 2 18 18 N 1.34273 * 126.29103 * 180.02562 * 2 1 3 19 19 C 1.46496 * 125.75498 * 359.96637 * 18 2 1 20 20 C 1.50709 * 109.47255 * 89.99488 * 19 18 2 21 21 H 1.08001 * 119.99651 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99401 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00330 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47349 * 89.99962 * 24 22 20 26 26 H 1.48508 * 109.46770 * 209.99733 * 24 22 20 27 27 H 1.48495 * 109.47086 * 329.99229 * 24 22 20 28 28 H 1.08997 * 109.47778 * 89.97298 * 1 2 3 29 29 H 1.08998 * 109.47463 * 209.97611 * 1 2 3 30 30 H 1.09009 * 109.47108 * 329.97399 * 1 2 3 31 31 H 0.96997 * 120.00019 * 359.97438 * 6 4 3 32 32 H 1.09000 * 109.46931 * 270.02577 * 10 9 8 33 33 H 1.09005 * 109.46865 * 30.01852 * 10 9 8 34 34 H 1.09000 * 109.47382 * 150.02228 * 10 9 8 35 35 H 1.08995 * 109.47419 * 270.05103 * 12 11 9 36 36 H 1.09004 * 109.46918 * 30.05302 * 12 11 9 37 37 H 1.09001 * 109.46946 * 150.04673 * 12 11 9 38 38 H 1.09001 * 109.47558 * 330.00021 * 14 13 11 39 39 H 1.08998 * 109.47216 * 209.99683 * 14 13 11 40 40 H 1.00901 * 110.99869 * 56.04737 * 15 14 13 41 41 H 1.00896 * 110.99543 * 179.97438 * 15 14 13 42 42 H 1.07994 * 125.98857 * 179.76372 * 16 3 2 43 43 H 1.08993 * 109.47327 * 209.99699 * 19 18 2 44 44 H 1.09004 * 109.47197 * 330.00269 * 19 18 2 45 45 H 0.96999 * 119.99828 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5202 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8001 3.5105 -0.0010 7 6 2.3837 4.8483 -0.0009 8 7 1.1406 5.2687 0.0027 9 7 1.1532 6.6694 -0.0040 10 6 -0.0246 7.5406 -0.0082 11 6 2.4402 7.0760 -0.0063 12 6 2.9193 8.5048 -0.0139 13 6 3.2236 5.9736 -0.0018 14 6 4.7305 5.9561 -0.0029 15 7 5.2212 5.9568 1.3818 16 6 3.6591 0.6498 -0.0058 17 7 3.6340 -0.6545 -0.0001 18 7 2.3017 -1.0823 -0.0005 19 6 1.8501 -2.4759 -0.0004 20 6 1.6945 -2.9536 -1.4213 21 1 1.9108 -2.2860 -2.2422 22 6 1.2770 -4.2433 -1.6730 23 7 1.1416 -4.6603 -2.9129 24 14 0.9036 -5.3982 -0.2531 25 1 -0.5273 -5.2732 0.1236 26 1 1.1866 -6.7967 -0.6650 27 1 1.7548 -5.0432 0.9107 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5143 31 1 3.7463 3.2971 -0.0006 32 1 -0.3169 7.7514 -1.0369 33 1 -0.8458 7.0438 0.5084 34 1 0.2127 8.4748 0.5008 35 1 3.0338 8.8443 -1.0433 36 1 2.1914 9.1348 0.4976 37 1 3.8790 8.5689 0.4988 38 1 5.1038 6.8393 -0.5211 39 1 5.0830 5.0595 -0.5128 40 1 4.8370 5.1823 1.9020 41 1 6.2297 5.9448 1.4079 42 1 4.5450 1.2675 -0.0109 43 1 2.5850 -3.0959 0.5129 44 1 0.8917 -2.5473 0.5138 45 1 0.8476 -5.5676 -3.0901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579532418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:42 Heat of formation + Delta-G solvation = 120.951152 kcal Electronic energy + Delta-G solvation = -28010.004924 eV Core-core repulsion = 24066.118917 eV Total energy + Delta-G solvation = -3943.886007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.55564 -40.86857 -38.77315 -35.52440 -34.61969 -33.93490 -32.51544 -32.07397 -31.67090 -31.25757 -28.13952 -27.69768 -26.95371 -26.23183 -24.18146 -23.22510 -22.51446 -20.83026 -20.23410 -19.10977 -18.78351 -17.44417 -17.23874 -16.54025 -16.33885 -15.89867 -15.45933 -15.13936 -15.00821 -14.67553 -14.48259 -14.18173 -13.89988 -13.74033 -13.54298 -13.38532 -13.36142 -12.73836 -12.62481 -12.59575 -12.54303 -12.31598 -12.24016 -12.10902 -12.07146 -11.62750 -11.24774 -10.85605 -10.59625 -10.53552 -10.39823 -10.22967 -9.80972 -9.43797 -8.97170 -8.86166 -8.69920 -8.63177 -8.22263 -7.95723 -6.34045 -4.38959 1.77466 2.00339 2.25261 2.57180 2.88980 3.01420 3.10819 3.17241 3.20502 3.40690 3.91399 4.14626 4.34445 4.52113 4.56925 4.80699 4.86705 4.94013 4.99569 5.04086 5.07058 5.13152 5.23498 5.26875 5.37527 5.39330 5.56540 5.57765 5.64532 5.80048 5.87018 6.03166 6.07186 6.24062 6.41325 6.48057 6.56046 6.82005 6.89167 6.93771 6.97975 7.16519 7.21876 7.28312 7.51647 7.95251 8.18012 8.22612 8.51195 8.69080 9.19623 10.78181 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002489 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.393892 B =11247.006719 C =11972.808313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.174 3.826 3 C -0.328 4.328 4 C 0.597 3.403 5 O -0.505 6.505 6 N -0.640 5.640 7 C 0.313 3.687 8 N -0.274 5.274 9 N -0.376 5.376 10 C 0.106 3.894 11 C 0.117 3.883 12 C -0.092 4.092 13 C -0.263 4.263 14 C 0.144 3.856 15 N -0.848 5.848 16 C 0.061 3.939 17 N -0.289 5.289 18 N -0.312 5.312 19 C 0.224 3.776 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.872 3.128 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.341 0.659 41 H 0.339 0.661 42 H 0.177 0.823 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 25.132 7.852 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.037 3.963 3 C -0.343 4.343 4 C 0.387 3.613 5 O -0.378 6.378 6 N -0.291 5.291 7 C 0.055 3.945 8 N -0.102 5.102 9 N -0.159 5.159 10 C -0.036 4.036 11 C -0.012 4.012 12 C -0.150 4.150 13 C -0.277 4.277 14 C 0.013 3.987 15 N -0.378 5.378 16 C -0.127 4.127 17 N -0.109 5.109 18 N -0.089 5.089 19 C 0.106 3.894 20 C -0.584 4.584 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.249 0.751 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.194 0.806 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.555 24.244 7.788 25.592 hybrid contribution 1.106 -0.914 0.175 1.445 sum 3.661 23.331 7.963 24.923 Atomic orbital electron populations 1.20620 0.86580 1.03796 1.04368 1.21452 0.94996 0.86287 0.93588 1.19496 0.93263 0.91866 1.29719 1.17459 0.85150 0.83650 0.75068 1.90803 1.15908 1.83412 1.47637 1.42787 1.10528 1.01077 1.74670 1.19080 0.91448 0.84997 0.98950 1.78114 1.16755 0.86764 1.28578 1.48274 1.04831 1.04605 1.58236 1.21776 0.86158 0.92412 1.03209 1.20690 0.84379 0.96543 0.99631 1.20476 1.02695 0.88771 1.03070 1.19196 0.95625 0.89907 1.22929 1.19860 0.88981 1.00422 0.89445 1.58782 1.12713 1.52707 1.13606 1.23730 0.96244 0.92627 1.00065 1.77149 0.98102 1.12256 1.23372 1.48911 1.02715 1.07556 1.49687 1.20176 0.95778 0.73197 1.00279 1.21085 1.48130 0.99211 0.89965 0.90008 1.24790 0.94275 0.97403 0.95882 1.69863 1.45076 1.18254 1.18676 0.86905 0.79543 0.81053 0.82685 1.19481 1.20336 1.18771 0.89324 0.90977 0.88598 0.75057 0.90907 0.89198 0.89743 0.90368 0.91224 0.89016 0.90418 0.95135 0.84621 0.84857 0.80580 0.92641 0.93353 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.57 36.00 0.34 -1.38 16 2 C 0.17 3.49 7.01 -81.60 -0.57 2.92 16 3 C -0.33 -5.97 6.13 -105.07 -0.64 -6.61 16 4 C 0.60 10.50 7.78 -12.53 -0.10 10.40 16 5 O -0.51 -10.35 13.56 5.26 0.07 -10.28 16 6 N -0.64 -8.98 5.44 -12.11 -0.07 -9.05 16 7 C 0.31 4.59 7.78 -154.43 -1.20 3.39 16 8 N -0.27 -4.52 10.80 31.43 0.34 -4.18 16 9 N -0.38 -4.57 4.01 -63.89 -0.26 -4.83 16 10 C 0.11 0.81 11.27 59.85 0.67 1.48 16 11 C 0.12 1.22 6.92 -82.28 -0.57 0.65 16 12 C -0.09 -0.56 9.72 36.01 0.35 -0.21 16 13 C -0.26 -3.00 5.63 -104.87 -0.59 -3.59 16 14 C 0.14 1.19 6.72 -4.97 -0.03 1.15 16 15 N -0.85 -6.31 9.61 -11.41 -0.11 -6.42 16 16 C 0.06 1.02 11.50 -16.98 -0.20 0.83 16 17 N -0.29 -6.02 12.50 30.86 0.39 -5.64 16 18 N -0.31 -6.86 3.56 -57.77 -0.21 -7.07 16 19 C 0.22 5.21 5.04 -5.19 -0.03 5.18 16 20 C -0.55 -14.95 9.94 -34.44 -0.34 -15.29 16 21 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 22 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 23 N -0.88 -25.86 13.96 55.43 0.77 -25.09 16 24 Si 0.87 19.75 27.47 -169.99 -4.67 15.08 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 28 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 29 H 0.07 1.20 7.05 -51.93 -0.37 0.84 16 30 H 0.10 1.67 6.50 -51.92 -0.34 1.33 16 31 H 0.41 4.38 7.16 -40.82 -0.29 4.09 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.38 7.04 -51.93 -0.37 0.02 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.32 7.07 -51.93 -0.37 -0.05 16 37 H 0.09 0.54 7.77 -51.93 -0.40 0.13 16 38 H 0.08 0.55 7.77 -51.93 -0.40 0.15 16 39 H 0.03 0.24 7.69 -51.93 -0.40 -0.16 16 40 H 0.34 2.72 8.99 -39.29 -0.35 2.37 16 41 H 0.34 1.81 9.08 -39.29 -0.36 1.45 16 42 H 0.18 2.04 7.50 -52.49 -0.39 1.64 16 43 H 0.06 1.29 7.20 -51.93 -0.37 0.91 16 44 H 0.05 1.04 6.44 -51.93 -0.33 0.70 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -36.28 378.32 -7.06 -43.35 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.03 Total: 7.34 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.00 Total: 1.07 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.86 Total: -62.27 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.28 -7.06 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579532418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.298 kcal (2) G-P(sol) polarization free energy of solvation -36.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds