Wall clock time and date at job start Tue Mar 31 2020 17:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38049 * 126.29604 * 2 1 4 4 C 1.47416 * 126.41452 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99906 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00236 * 180.02562 * 4 3 2 7 7 C 1.40112 * 120.00163 * 180.02562 * 6 4 3 8 8 N 1.31225 * 125.97630 * 0.17325 * 7 6 4 9 9 N 1.40070 * 108.17035 * 180.22825 * 8 7 6 10 10 C 1.46504 * 125.97779 * 179.74021 * 9 8 7 11 11 C 1.34968 * 108.05105 * 359.75421 * 9 8 7 12 12 C 1.50702 * 126.07179 * 179.97438 * 11 9 8 13 13 C 1.35242 * 107.86337 * 0.02562 * 11 9 8 14 14 C 1.50697 * 126.06694 * 179.97438 * 13 11 9 15 15 N 1.46905 * 109.47066 * 89.99857 * 14 13 11 16 16 C 1.41295 * 107.17273 * 180.24618 * 3 2 1 17 17 N 1.30451 * 108.02018 * 359.58573 * 16 3 2 18 18 N 1.34273 * 126.29103 * 180.02562 * 2 1 3 19 19 C 1.46496 * 125.75498 * 359.96637 * 18 2 1 20 20 C 1.50709 * 109.47255 * 89.99488 * 19 18 2 21 21 H 1.08001 * 119.99651 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99401 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00330 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47349 * 89.99962 * 24 22 20 26 26 H 1.48508 * 109.46770 * 209.99733 * 24 22 20 27 27 H 1.48495 * 109.47086 * 329.99229 * 24 22 20 28 28 H 1.08997 * 109.47778 * 89.97298 * 1 2 3 29 29 H 1.08998 * 109.47463 * 209.97611 * 1 2 3 30 30 H 1.09009 * 109.47108 * 329.97399 * 1 2 3 31 31 H 0.96997 * 120.00019 * 359.97438 * 6 4 3 32 32 H 1.09000 * 109.46931 * 270.02577 * 10 9 8 33 33 H 1.09005 * 109.46865 * 30.01852 * 10 9 8 34 34 H 1.09000 * 109.47382 * 150.02228 * 10 9 8 35 35 H 1.08995 * 109.47419 * 270.05103 * 12 11 9 36 36 H 1.09004 * 109.46918 * 30.05302 * 12 11 9 37 37 H 1.09001 * 109.46946 * 150.04673 * 12 11 9 38 38 H 1.09001 * 109.47558 * 330.00021 * 14 13 11 39 39 H 1.08998 * 109.47216 * 209.99683 * 14 13 11 40 40 H 1.00901 * 110.99869 * 56.04737 * 15 14 13 41 41 H 1.00896 * 110.99543 * 179.97438 * 15 14 13 42 42 H 1.07994 * 125.98857 * 179.76372 * 16 3 2 43 43 H 1.08993 * 109.47327 * 209.99699 * 19 18 2 44 44 H 1.09004 * 109.47197 * 330.00269 * 19 18 2 45 45 H 0.96999 * 119.99828 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5202 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8001 3.5105 -0.0010 7 6 2.3837 4.8483 -0.0009 8 7 1.1406 5.2687 0.0027 9 7 1.1532 6.6694 -0.0040 10 6 -0.0246 7.5406 -0.0082 11 6 2.4402 7.0760 -0.0063 12 6 2.9193 8.5048 -0.0139 13 6 3.2236 5.9736 -0.0018 14 6 4.7305 5.9561 -0.0029 15 7 5.2212 5.9568 1.3818 16 6 3.6591 0.6498 -0.0058 17 7 3.6340 -0.6545 -0.0001 18 7 2.3017 -1.0823 -0.0005 19 6 1.8501 -2.4759 -0.0004 20 6 1.6945 -2.9536 -1.4213 21 1 1.9108 -2.2860 -2.2422 22 6 1.2770 -4.2433 -1.6730 23 7 1.1416 -4.6603 -2.9129 24 14 0.9036 -5.3982 -0.2531 25 1 -0.5273 -5.2732 0.1236 26 1 1.1866 -6.7967 -0.6650 27 1 1.7548 -5.0432 0.9107 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5143 31 1 3.7463 3.2971 -0.0006 32 1 -0.3169 7.7514 -1.0369 33 1 -0.8458 7.0438 0.5084 34 1 0.2127 8.4748 0.5008 35 1 3.0338 8.8443 -1.0433 36 1 2.1914 9.1348 0.4976 37 1 3.8790 8.5689 0.4988 38 1 5.1038 6.8393 -0.5211 39 1 5.0830 5.0595 -0.5128 40 1 4.8370 5.1823 1.9020 41 1 6.2297 5.9448 1.4079 42 1 4.5450 1.2675 -0.0109 43 1 2.5850 -3.0959 0.5129 44 1 0.8917 -2.5473 0.5138 45 1 0.8476 -5.5676 -3.0901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579532418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:39 Heat of formation + Delta-G solvation = 92.608126 kcal Electronic energy + Delta-G solvation = -28011.233970 eV Core-core repulsion = 24066.118917 eV Total energy + Delta-G solvation = -3945.115053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -42.59206 -42.24430 -40.09789 -36.45876 -35.80433 -35.48954 -34.08410 -33.31142 -32.80327 -32.31877 -29.82064 -28.54447 -28.28633 -27.10230 -25.32290 -24.67687 -23.81586 -22.12314 -21.27125 -20.56677 -19.88494 -19.30494 -18.63645 -17.70588 -17.08538 -16.78839 -16.72993 -16.48525 -16.30055 -16.04821 -15.62762 -15.37634 -15.24729 -14.96311 -14.50785 -14.36183 -14.21239 -14.11749 -13.84727 -13.83491 -13.75363 -13.47172 -13.19154 -13.17305 -13.05626 -12.85183 -12.69546 -12.57918 -12.18016 -11.86774 -11.85181 -11.59834 -11.44816 -10.93260 -10.79696 -10.32253 -9.73838 -9.58049 -9.43431 -9.01927 -8.44515 -6.56839 0.48506 0.97772 1.20177 1.29790 1.33612 1.36788 1.44994 1.64621 1.77862 2.23447 2.29002 2.57088 2.87814 3.51360 3.64396 3.68544 3.87729 4.00735 4.01211 4.12120 4.24667 4.35098 4.37328 4.40762 4.43961 4.48693 4.64269 4.66633 4.69102 4.74243 4.84471 4.85719 5.00177 5.05495 5.08479 5.15545 5.20038 5.28584 5.53554 5.77459 5.80956 6.15865 6.17992 6.27067 6.31628 6.46097 6.70534 6.73579 6.92609 7.07024 7.25155 8.72022 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002489 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.393892 B =11247.006719 C =11972.808313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.154 3.846 3 C -0.328 4.328 4 C 0.598 3.402 5 O -0.540 6.540 6 N -0.624 5.624 7 C 0.289 3.711 8 N -0.335 5.335 9 N -0.380 5.380 10 C 0.096 3.904 11 C 0.119 3.881 12 C -0.087 4.087 13 C -0.270 4.270 14 C 0.147 3.853 15 N -0.850 5.850 16 C 0.084 3.916 17 N -0.327 5.327 18 N -0.335 5.335 19 C 0.233 3.767 20 C -0.554 4.554 21 H 0.026 0.974 22 C 0.023 3.977 23 N -0.935 5.935 24 Si 0.949 3.051 25 H -0.253 1.253 26 H -0.277 1.277 27 H -0.241 1.241 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.428 0.572 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.035 0.965 40 H 0.338 0.662 41 H 0.352 0.648 42 H 0.230 0.770 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 27.267 9.796 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.018 3.982 3 C -0.343 4.343 4 C 0.387 3.613 5 O -0.415 6.415 6 N -0.274 5.274 7 C 0.033 3.967 8 N -0.164 5.164 9 N -0.164 5.164 10 C -0.044 4.044 11 C -0.010 4.010 12 C -0.145 4.145 13 C -0.284 4.284 14 C 0.016 3.984 15 N -0.381 5.381 16 C -0.104 4.104 17 N -0.146 5.146 18 N -0.112 5.112 19 C 0.113 3.887 20 C -0.592 4.592 21 H 0.044 0.956 22 C -0.177 4.177 23 N -0.573 5.573 24 Si 0.770 3.230 25 H -0.177 1.177 26 H -0.202 1.202 27 H -0.164 1.164 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.150 0.850 41 H 0.166 0.834 42 H 0.246 0.754 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.819 26.434 9.739 28.428 hybrid contribution 0.758 -1.314 -0.523 1.605 sum 4.577 25.120 9.216 27.146 Atomic orbital electron populations 1.20597 0.85774 1.04579 1.03847 1.21905 0.95918 0.86637 0.93742 1.19704 0.93777 0.91957 1.28890 1.17386 0.85119 0.83897 0.74876 1.90783 1.17439 1.83911 1.49337 1.42477 1.10728 1.00732 1.73494 1.19387 0.92030 0.85373 0.99906 1.77950 1.18468 0.89651 1.30315 1.48575 1.06610 1.03478 1.57724 1.22118 0.84944 0.92965 1.04374 1.21438 0.83535 0.98420 0.97639 1.20621 1.03320 0.86034 1.04541 1.19568 0.97124 0.88882 1.22830 1.19897 0.87009 1.01441 0.90043 1.58744 1.13740 1.52550 1.13048 1.24523 0.97373 0.91701 0.96760 1.77100 0.97866 1.14210 1.25383 1.48773 1.03479 1.07282 1.51672 1.19932 0.96932 0.74355 0.97460 1.21181 1.48249 0.98863 0.90913 0.95587 1.25825 0.93599 0.99227 0.99070 1.70025 1.46558 1.19102 1.21609 0.85701 0.80441 0.77824 0.79046 1.17723 1.20206 1.16418 0.90427 0.89744 0.88173 0.73212 0.89804 0.90203 0.86079 0.88620 0.89291 0.88356 0.88852 0.94652 0.85041 0.83398 0.75409 0.92246 0.91104 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.32 9.57 71.23 0.68 -2.64 16 2 C 0.15 6.28 7.01 42.14 0.30 6.57 16 3 C -0.33 -11.88 6.13 -20.15 -0.12 -12.00 16 4 C 0.60 21.11 7.78 86.66 0.67 21.78 16 5 O -0.54 -22.71 13.56 -4.10 -0.06 -22.76 16 6 N -0.62 -17.05 5.44 -310.47 -1.69 -18.74 16 7 C 0.29 8.35 7.78 133.34 1.04 9.39 16 8 N -0.33 -11.12 10.80 -54.47 -0.59 -11.71 16 9 N -0.38 -8.83 4.01 -356.06 -1.43 -10.26 16 10 C 0.10 1.33 11.27 127.77 1.44 2.77 16 11 C 0.12 2.23 6.92 41.39 0.29 2.51 16 12 C -0.09 -0.74 9.72 71.24 0.69 -0.05 16 13 C -0.27 -5.70 5.63 -20.03 -0.11 -5.81 16 14 C 0.15 2.05 6.72 85.55 0.58 2.62 16 15 N -0.85 -10.47 9.61 -190.00 -1.83 -12.30 16 16 C 0.08 2.70 11.50 85.65 0.99 3.69 16 17 N -0.33 -13.50 12.50 -56.27 -0.70 -14.20 16 18 N -0.34 -14.89 3.56 -336.69 -1.20 -16.09 16 19 C 0.23 10.82 5.04 85.64 0.43 11.25 16 20 C -0.55 -31.41 9.94 25.60 0.25 -31.16 16 21 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 22 C 0.02 1.28 5.47 84.65 0.46 1.75 16 23 N -0.93 -56.69 13.96 21.45 0.30 -56.39 16 24 Si 0.95 40.41 27.47 68.60 1.88 42.29 16 25 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 26 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 28 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.08 2.83 7.05 -2.39 -0.02 2.81 16 30 H 0.10 3.58 6.50 -2.38 -0.02 3.57 16 31 H 0.43 8.33 7.16 -92.71 -0.66 7.67 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.12 0.73 7.04 -2.39 -0.02 0.71 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 0.44 7.07 -2.39 -0.02 0.42 16 37 H 0.10 0.77 7.77 -2.39 -0.02 0.75 16 38 H 0.09 1.01 7.77 -2.39 -0.02 0.99 16 39 H 0.04 0.45 7.69 -2.39 -0.02 0.43 16 40 H 0.34 4.69 8.99 -89.69 -0.81 3.88 16 41 H 0.35 2.78 9.08 -89.70 -0.81 1.97 16 42 H 0.23 4.52 7.50 -2.91 -0.02 4.50 16 43 H 0.06 2.70 7.20 -2.39 -0.02 2.68 16 44 H 0.07 2.95 6.44 -2.38 -0.02 2.93 16 45 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -84.26 378.32 1.01 -83.26 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -1.27 Total: 26.22 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 7.58 Total: 10.67 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -7.13 Total: -139.67 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.29 kcal Total: -84.26 1.01 -83.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579532418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.866 kcal (2) G-P(sol) polarization free energy of solvation -84.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds