Wall clock time and date at job start Tue Mar 31 2020 18:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21301 * 120.00023 * 119.99849 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.39665 * 120.00164 * 180.02562 * 14 12 2 16 16 C 1.35351 * 125.80624 * 359.69102 * 15 14 12 17 17 C 1.41830 * 107.31461 * 179.85432 * 16 15 14 18 18 C 1.48457 * 126.39739 * 180.16032 * 17 16 15 19 19 N 1.34053 * 126.67707 * 179.97438 * 18 17 16 20 20 N 1.28978 * 107.26880 * 179.89479 * 19 18 17 21 21 N 1.28730 * 108.94696 * 0.37170 * 20 19 18 22 22 H 0.97006 * 125.34243 * 179.76496 * 21 20 19 23 23 N 1.28875 * 109.31814 * 359.76429 * 21 20 19 24 24 C 1.35932 * 107.20632 * 0.40495 * 17 16 15 25 25 N 1.36593 * 108.17058 * 359.75546 * 24 17 16 26 26 C 1.46508 * 125.53618 * 180.02562 * 25 24 17 27 27 C 1.52995 * 109.47309 * 359.97438 * 26 25 24 28 28 C 1.53001 * 109.47168 * 119.99880 * 26 25 24 29 29 C 1.53001 * 109.46822 * 239.99357 * 26 25 24 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 34 34 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 35 35 H 1.07999 * 126.34054 * 359.97438 * 16 15 14 36 36 H 1.08001 * 125.91955 * 179.74836 * 24 17 16 37 37 H 1.08999 * 109.47296 * 59.99639 * 27 26 25 38 38 H 1.08996 * 109.47225 * 180.02562 * 27 26 25 39 39 H 1.08999 * 109.46818 * 300.00207 * 27 26 25 40 40 H 1.08996 * 109.47376 * 59.99503 * 28 26 25 41 41 H 1.08996 * 109.47120 * 179.97438 * 28 26 25 42 42 H 1.09007 * 109.46891 * 299.99847 * 28 26 25 43 43 H 1.09005 * 109.46546 * 60.00175 * 29 26 25 44 44 H 1.09006 * 109.46869 * 179.97438 * 29 26 25 45 45 H 1.08996 * 109.47624 * 300.00430 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7297 -1.6967 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1727 -0.9080 3.5950 16 6 2.9498 -2.0162 3.6078 17 6 3.1912 -2.3467 4.9658 18 6 3.9990 -3.4881 5.4644 19 7 4.2312 -3.8053 6.7460 20 7 4.9725 -4.8608 6.7509 21 7 5.2159 -5.2063 5.5350 22 1 5.7541 -5.9667 5.2647 23 7 4.6323 -4.3834 4.7330 24 6 2.5402 -1.4265 5.7255 25 7 1.9170 -0.5462 4.8873 26 6 1.1065 0.6001 5.3062 27 6 1.0626 0.6626 6.8342 28 6 1.7249 1.8887 4.7601 29 6 -0.3149 0.4460 4.7614 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 1.1494 0.5389 2.5436 35 1 3.3192 -2.5488 2.7440 36 1 2.5192 -1.3965 6.8049 37 1 2.0752 0.7722 7.2226 38 1 0.4593 1.5152 7.1458 39 1 0.6219 -0.2554 7.2229 40 1 1.7559 1.8439 3.6715 41 1 1.1217 2.7415 5.0714 42 1 2.7376 1.9985 5.1482 43 1 -0.7554 -0.4721 5.1505 44 1 -0.9181 1.2986 5.0735 45 1 -0.2840 0.4012 3.6728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603442659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:09 Heat of formation + Delta-G solvation = 139.192213 kcal Electronic energy + Delta-G solvation = -28898.667469 eV Core-core repulsion = 24955.572454 eV Total energy + Delta-G solvation = -3943.095015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.21509 -41.61512 -38.79888 -36.68232 -34.28507 -33.92680 -33.84621 -33.00798 -30.61990 -29.74232 -28.31193 -27.66865 -27.15398 -25.21567 -24.35139 -24.03677 -23.04050 -21.49809 -20.54210 -19.52102 -18.87637 -18.79790 -17.01777 -16.92665 -16.26024 -16.00383 -15.37641 -15.15798 -14.72130 -14.41137 -14.34211 -14.13033 -13.75716 -13.45687 -13.21913 -13.02399 -12.70146 -12.60110 -12.47581 -12.21778 -12.09068 -12.03521 -11.80387 -11.60060 -11.50167 -11.20462 -11.19300 -11.02094 -10.90772 -10.87618 -10.77544 -10.72185 -10.36677 -10.01066 -9.88216 -9.07319 -8.66657 -8.38438 -8.28576 -7.16345 -6.08933 -4.12367 1.21033 1.75288 2.37340 2.53725 2.65004 3.34848 3.37138 3.42275 3.46592 3.58758 3.81094 4.13401 4.26781 4.43107 4.47068 4.48690 4.58942 5.06199 5.18015 5.23363 5.25024 5.36230 5.40560 5.47700 5.50919 5.58936 5.62460 5.70120 5.74360 5.92891 5.93107 6.00496 6.24925 6.44433 6.49611 6.60221 6.63347 6.70942 6.82827 7.04857 7.30682 7.38340 7.61610 7.67562 7.92323 8.04651 8.29995 8.36871 8.96358 9.04789 9.53589 10.98799 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003709 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.327813 B = 7548.104843 C = 9862.771835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.037 3.963 3 H 0.055 0.945 4 C -0.503 4.503 5 H 0.076 0.924 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.510 6.510 14 N -0.665 5.665 15 C 0.263 3.737 16 C -0.180 4.180 17 C -0.097 4.097 18 C 0.270 3.730 19 N -0.283 5.283 20 N -0.064 5.064 21 N -0.235 5.235 22 H 0.472 0.528 23 N -0.294 5.294 24 C 0.032 3.968 25 N -0.446 5.446 26 C 0.151 3.849 27 C -0.154 4.154 28 C -0.164 4.164 29 C -0.164 4.164 30 H 0.097 0.903 31 H 0.009 0.991 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.401 0.599 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 -0.308 19.228 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.382 6.382 14 N -0.314 5.314 15 C 0.060 3.940 16 C -0.207 4.207 17 C -0.108 4.108 18 C -0.010 4.010 19 N -0.157 5.157 20 N -0.059 5.059 21 N -0.081 5.081 22 H 0.325 0.675 23 N -0.145 5.145 24 C -0.101 4.101 25 N -0.130 5.130 26 C 0.068 3.932 27 C -0.212 4.212 28 C -0.222 4.222 29 C -0.222 4.222 30 H 0.115 0.885 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.189 0.811 36 H 0.190 0.810 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.425 -0.978 19.441 19.471 hybrid contribution 0.117 -0.179 -1.234 1.252 sum 0.541 -1.157 18.208 18.253 Atomic orbital electron populations 1.21791 0.96349 1.00139 1.00979 1.18884 0.94207 0.96859 0.88477 0.92690 1.21081 1.31316 1.12998 0.88742 0.90560 1.24931 0.94990 0.95014 0.99140 1.69850 1.36952 1.23000 1.23801 0.86476 0.79349 0.79728 0.81449 1.20110 1.21378 1.20108 1.22249 0.78774 0.84671 0.83156 1.90488 1.36266 1.25882 1.85573 1.43811 1.52975 1.31128 1.03513 1.17386 1.01901 0.95892 0.78810 1.21192 1.05070 0.98265 0.96169 1.16323 1.05468 0.95259 0.93782 1.22930 0.97282 0.95384 0.85395 1.76010 1.13175 1.06956 1.19578 1.78784 1.12589 1.09330 1.05180 1.47714 1.34927 1.23148 1.02303 0.67473 1.75121 1.13233 1.04153 1.21983 1.21396 1.00675 0.92387 0.95653 1.44230 1.41142 1.23388 1.04208 1.20890 0.90948 0.84875 0.96459 1.22108 1.03508 1.03559 0.91999 1.22298 1.02005 0.95706 1.02205 1.22304 0.94209 1.03462 1.02263 0.88493 0.97177 0.94649 0.92810 0.76150 0.81083 0.80963 0.91156 0.90328 0.91161 0.91555 0.90265 0.91271 0.91288 0.90280 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.87 37.16 0.33 -2.61 16 2 C 0.04 0.88 2.64 -92.92 -0.25 0.63 16 3 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -13.80 8.37 -34.44 -0.29 -14.09 16 5 H 0.08 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.39 11.32 55.43 0.63 -23.76 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.52 11.51 7.11 -10.98 -0.08 11.43 16 13 O -0.51 -12.77 12.55 5.54 0.07 -12.70 16 14 N -0.66 -11.62 4.58 -11.27 -0.05 -11.67 16 15 C 0.26 4.45 6.95 -152.00 -1.06 3.40 16 16 C -0.18 -3.38 9.67 -39.24 -0.38 -3.76 16 17 C -0.10 -1.58 6.12 -105.14 -0.64 -2.22 16 18 C 0.27 4.29 8.18 -156.30 -1.28 3.01 16 19 N -0.28 -4.22 12.53 32.16 0.40 -3.82 16 20 N -0.06 -0.82 13.47 60.35 0.81 -0.01 16 21 N -0.24 -2.64 7.90 60.35 0.48 -2.16 16 22 H 0.47 2.91 8.96 -340.36 -3.05 -0.14 16 23 N -0.29 -4.44 12.40 32.17 0.40 -4.04 16 24 C 0.03 0.43 10.29 -16.26 -0.17 0.27 16 25 N -0.45 -5.88 2.63 -101.83 -0.27 -6.15 16 26 C 0.15 1.45 1.05 -131.82 -0.14 1.31 16 27 C -0.15 -1.08 7.34 37.16 0.27 -0.81 16 28 C -0.16 -1.50 8.46 37.16 0.31 -1.18 16 29 C -0.16 -1.51 8.46 37.16 0.31 -1.20 16 30 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 31 H 0.01 0.17 7.56 -51.93 -0.39 -0.23 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.40 5.95 4.27 -40.82 -0.17 5.77 16 35 H 0.17 3.74 5.79 -52.49 -0.30 3.43 16 36 H 0.17 1.84 7.10 -52.49 -0.37 1.47 16 37 H 0.07 0.49 7.83 -51.93 -0.41 0.08 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.49 7.83 -51.93 -0.41 0.08 16 40 H 0.07 0.71 5.82 -51.93 -0.30 0.41 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.72 5.82 -51.93 -0.30 0.42 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -33.00 366.16 -8.65 -41.65 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.48 Total: 5.03 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.14 Total: -4.27 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 2.40 Total: -51.62 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.00 -8.65 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.843 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds