Wall clock time and date at job start Tue Mar 31 2020 18:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21301 * 120.00023 * 119.99849 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.39665 * 120.00164 * 180.02562 * 14 12 2 16 16 C 1.35351 * 125.80624 * 359.69102 * 15 14 12 17 17 C 1.41830 * 107.31461 * 179.85432 * 16 15 14 18 18 C 1.48457 * 126.39739 * 180.16032 * 17 16 15 19 19 N 1.34053 * 126.67707 * 179.97438 * 18 17 16 20 20 N 1.28978 * 107.26880 * 179.89479 * 19 18 17 21 21 N 1.28730 * 108.94696 * 0.37170 * 20 19 18 22 22 H 0.97006 * 125.34243 * 179.76496 * 21 20 19 23 23 N 1.28875 * 109.31814 * 359.76429 * 21 20 19 24 24 C 1.35932 * 107.20632 * 0.40495 * 17 16 15 25 25 N 1.36593 * 108.17058 * 359.75546 * 24 17 16 26 26 C 1.46508 * 125.53618 * 180.02562 * 25 24 17 27 27 C 1.52995 * 109.47309 * 359.97438 * 26 25 24 28 28 C 1.53001 * 109.47168 * 119.99880 * 26 25 24 29 29 C 1.53001 * 109.46822 * 239.99357 * 26 25 24 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 34 34 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 35 35 H 1.07999 * 126.34054 * 359.97438 * 16 15 14 36 36 H 1.08001 * 125.91955 * 179.74836 * 24 17 16 37 37 H 1.08999 * 109.47296 * 59.99639 * 27 26 25 38 38 H 1.08996 * 109.47225 * 180.02562 * 27 26 25 39 39 H 1.08999 * 109.46818 * 300.00207 * 27 26 25 40 40 H 1.08996 * 109.47376 * 59.99503 * 28 26 25 41 41 H 1.08996 * 109.47120 * 179.97438 * 28 26 25 42 42 H 1.09007 * 109.46891 * 299.99847 * 28 26 25 43 43 H 1.09005 * 109.46546 * 60.00175 * 29 26 25 44 44 H 1.09006 * 109.46869 * 179.97438 * 29 26 25 45 45 H 1.08996 * 109.47624 * 300.00430 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7297 -1.6967 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1727 -0.9080 3.5950 16 6 2.9498 -2.0162 3.6078 17 6 3.1912 -2.3467 4.9658 18 6 3.9990 -3.4881 5.4644 19 7 4.2312 -3.8053 6.7460 20 7 4.9725 -4.8608 6.7509 21 7 5.2159 -5.2063 5.5350 22 1 5.7541 -5.9667 5.2647 23 7 4.6323 -4.3834 4.7330 24 6 2.5402 -1.4265 5.7255 25 7 1.9170 -0.5462 4.8873 26 6 1.1065 0.6001 5.3062 27 6 1.0626 0.6626 6.8342 28 6 1.7249 1.8887 4.7601 29 6 -0.3149 0.4460 4.7614 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 1.1494 0.5389 2.5436 35 1 3.3192 -2.5488 2.7440 36 1 2.5192 -1.3965 6.8049 37 1 2.0752 0.7722 7.2226 38 1 0.4593 1.5152 7.1458 39 1 0.6219 -0.2554 7.2229 40 1 1.7559 1.8439 3.6715 41 1 1.1217 2.7415 5.0714 42 1 2.7376 1.9985 5.1482 43 1 -0.7554 -0.4721 5.1505 44 1 -0.9181 1.2986 5.0735 45 1 -0.2840 0.4012 3.6728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:08 Heat of formation + Delta-G solvation = 118.243024 kcal Electronic energy + Delta-G solvation = -28899.575894 eV Core-core repulsion = 24955.572454 eV Total energy + Delta-G solvation = -3944.003440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.29901 -42.80857 -40.45782 -37.56149 -35.84480 -35.67339 -35.14025 -34.13250 -32.54796 -30.83783 -29.36440 -28.36737 -28.06757 -27.22038 -25.50945 -25.18116 -24.64115 -22.72028 -21.84814 -20.78718 -20.33324 -19.90040 -18.29298 -18.00582 -17.94862 -17.56276 -16.63550 -16.50822 -16.37264 -15.78968 -15.49998 -15.23667 -14.98378 -14.68287 -14.54773 -14.30217 -14.27709 -13.64217 -13.48677 -13.19499 -13.11915 -13.00077 -12.93272 -12.82579 -12.74741 -12.72782 -12.54088 -12.36999 -12.27360 -12.20008 -12.02295 -11.99696 -11.98020 -11.93258 -11.26504 -11.08151 -10.59638 -10.30676 -9.47559 -8.48623 -8.16258 -6.26073 0.13928 0.62594 1.13714 1.38568 1.42986 1.43590 1.52176 1.60147 2.02357 2.27561 2.35136 2.46897 3.01331 3.14321 3.29869 3.57370 3.78680 3.90214 4.06808 4.12322 4.39539 4.49686 4.56262 4.62576 4.66992 4.69419 4.73635 4.81212 4.86943 4.88532 4.89680 4.94080 4.96429 5.10270 5.17723 5.23224 5.24416 5.41068 5.46656 5.70142 5.72559 5.76720 5.93566 5.99994 6.19211 6.40092 6.67457 6.82550 7.26961 7.34288 7.44973 8.89597 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003709 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.327813 B = 7548.104843 C = 9862.771835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.548 6.548 14 N -0.644 5.644 15 C 0.248 3.752 16 C -0.207 4.207 17 C -0.122 4.122 18 C 0.257 3.743 19 N -0.292 5.292 20 N -0.057 5.057 21 N -0.209 5.209 22 H 0.491 0.509 23 N -0.320 5.320 24 C 0.066 3.934 25 N -0.433 5.433 26 C 0.142 3.858 27 C -0.151 4.151 28 C -0.164 4.164 29 C -0.165 4.165 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.415 0.585 35 H 0.133 0.867 36 H 0.209 0.791 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 0.817 21.687 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.014 3.986 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.312 3.688 13 O -0.424 6.424 14 N -0.294 5.294 15 C 0.045 3.955 16 C -0.235 4.235 17 C -0.133 4.133 18 C -0.022 4.022 19 N -0.166 5.166 20 N -0.052 5.052 21 N -0.059 5.059 22 H 0.349 0.651 23 N -0.172 5.172 24 C -0.069 4.069 25 N -0.115 5.115 26 C 0.061 3.939 27 C -0.209 4.209 28 C -0.222 4.222 29 C -0.222 4.222 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.226 0.774 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.553 0.179 21.940 21.948 hybrid contribution 0.446 -0.547 -1.904 2.031 sum -0.107 -0.368 20.036 20.039 Atomic orbital electron populations 1.21602 0.94725 0.99680 1.01962 1.18784 0.95457 0.96008 0.88371 0.93411 1.21227 1.31879 1.12904 0.90880 0.93146 1.25519 0.95105 0.95681 1.01210 1.69918 1.36997 1.23372 1.24479 0.85684 0.78656 0.78759 0.78988 1.20268 1.19873 1.20300 1.21841 0.78574 0.84162 0.84218 1.90498 1.38012 1.27492 1.86385 1.43280 1.52311 1.31110 1.02652 1.17169 1.02477 0.95906 0.79989 1.20935 1.06614 0.99445 0.96475 1.16415 1.07177 0.96777 0.92948 1.22956 0.97722 0.95639 0.85888 1.75979 1.13918 1.07638 1.19026 1.78703 1.12160 1.08867 1.05496 1.47711 1.33855 1.22856 1.01450 0.65106 1.75084 1.14075 1.04967 1.23070 1.21911 0.97783 0.90405 0.96805 1.44518 1.40588 1.23994 1.02420 1.21350 0.90497 0.83428 0.98644 1.22153 1.04441 1.05042 0.89215 1.22339 1.02498 0.96582 1.00787 1.22343 0.94265 1.04760 1.00852 0.90518 0.93039 0.95711 0.92478 0.74461 0.84975 0.77436 0.90767 0.87625 0.90758 0.93628 0.87111 0.91673 0.91667 0.87120 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.87 71.98 0.64 -4.70 16 2 C 0.04 1.72 2.64 -12.28 -0.03 1.69 16 3 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.53 -30.23 8.37 25.60 0.21 -30.01 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -49.72 11.32 21.45 0.24 -49.48 16 8 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 C 0.52 24.04 7.11 87.66 0.62 24.67 16 13 O -0.55 -29.30 12.55 -3.09 -0.04 -29.34 16 14 N -0.64 -22.87 4.58 -307.95 -1.41 -24.28 16 15 C 0.25 8.49 6.95 130.65 0.91 9.40 16 16 C -0.21 -8.14 9.67 22.49 0.22 -7.92 16 17 C -0.12 -3.99 6.12 -20.20 -0.12 -4.11 16 18 C 0.26 8.19 8.18 137.38 1.12 9.31 16 19 N -0.29 -8.38 12.53 -52.18 -0.65 -9.03 16 20 N -0.06 -1.41 13.47 37.02 0.50 -0.91 16 21 N -0.21 -4.54 7.90 37.02 0.29 -4.25 16 22 H 0.49 5.59 8.96 -347.53 -3.12 2.48 16 23 N -0.32 -9.81 12.40 -52.13 -0.65 -10.45 16 24 C 0.07 1.64 10.29 83.42 0.86 2.50 16 25 N -0.43 -10.73 2.63 -476.10 -1.25 -11.98 16 26 C 0.14 2.28 1.05 3.60 0.00 2.28 16 27 C -0.15 -1.43 7.34 71.98 0.53 -0.90 16 28 C -0.16 -2.53 8.46 71.98 0.61 -1.92 16 29 C -0.16 -2.52 8.46 71.98 0.61 -1.91 16 30 H 0.08 3.71 6.07 -2.39 -0.01 3.69 16 31 H 0.05 1.77 7.56 -2.39 -0.02 1.75 16 32 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 34 H 0.42 12.11 4.27 -92.71 -0.40 11.71 16 35 H 0.13 6.29 5.79 -2.91 -0.02 6.27 16 36 H 0.21 3.66 7.10 -2.91 -0.02 3.64 16 37 H 0.07 0.69 7.83 -2.39 -0.02 0.67 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.69 7.83 -2.39 -0.02 0.67 16 40 H 0.04 0.89 5.82 -2.39 -0.01 0.88 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.05 0.90 5.82 -2.39 -0.01 0.89 16 Total: -1.00 -75.34 366.16 3.23 -72.11 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -2.45 Total: 20.91 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 6.63 Total: 0.16 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -2.93 Total: -110.38 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.04 Total: -29.34 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -75.34 3.23 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.351 kcal (2) G-P(sol) polarization free energy of solvation -75.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds