Wall clock time and date at job start Tue Mar 31 2020 18:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 13 13 O 1.21304 * 120.00282 * 239.99962 * 12 2 1 14 14 N 1.34779 * 120.00037 * 60.00381 * 12 2 1 15 15 C 1.39666 * 119.99979 * 180.02562 * 14 12 2 16 16 C 1.35345 * 125.81277 * 0.02562 * 15 14 12 17 17 C 1.41823 * 107.32259 * 180.02562 * 16 15 14 18 18 C 1.48453 * 126.40044 * 179.97438 * 17 16 15 19 19 N 1.34056 * 126.67680 * 179.71025 * 18 17 16 20 20 N 1.28983 * 107.26818 * 179.87092 * 19 18 17 21 21 N 1.28724 * 108.94916 * 0.39757 * 20 19 18 22 22 H 0.96999 * 125.34437 * 179.78292 * 21 20 19 23 23 N 1.28879 * 109.31787 * 359.74674 * 21 20 19 24 24 C 1.35940 * 107.20576 * 359.97438 * 17 16 15 25 25 N 1.36599 * 108.16523 * 359.73716 * 24 17 16 26 26 C 1.46502 * 125.53654 * 180.25698 * 25 24 17 27 27 C 1.53000 * 109.46791 * 0.20117 * 26 25 24 28 28 C 1.53000 * 109.46754 * 120.19794 * 26 25 24 29 29 C 1.52999 * 109.47402 * 240.19846 * 26 25 24 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 34 34 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 35 35 H 1.08006 * 126.33840 * 0.02568 * 16 15 14 36 36 H 1.07991 * 125.91832 * 179.97438 * 24 17 16 37 37 H 1.08998 * 109.47451 * 60.00019 * 27 26 25 38 38 H 1.09000 * 109.46946 * 179.97438 * 27 26 25 39 39 H 1.08991 * 109.47363 * 299.99326 * 27 26 25 40 40 H 1.09000 * 109.47295 * 60.00175 * 28 26 25 41 41 H 1.09000 * 109.46926 * 180.02562 * 28 26 25 42 42 H 1.08998 * 109.47421 * 299.99940 * 28 26 25 43 43 H 1.09005 * 109.47058 * 60.00364 * 29 26 25 44 44 H 1.09000 * 109.47075 * 180.02562 * 29 26 25 45 45 H 1.09000 * 109.46996 * 300.00038 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 6 2.0323 -0.7104 -1.2304 13 8 2.7297 -1.6967 -1.1192 14 7 1.7068 -0.2500 -2.4546 15 6 2.1719 -0.9087 -3.5949 16 6 2.9523 -2.0144 -3.6078 17 6 3.1890 -2.3484 -4.9657 18 6 3.9960 -3.4903 -5.4643 19 7 4.2188 -3.8142 -6.7459 20 7 4.9671 -4.8648 -6.7508 21 7 5.2104 -5.2104 -5.5349 22 1 5.7479 -5.9712 -5.2646 23 7 4.6282 -4.3864 -4.7329 24 6 2.5388 -1.4276 -5.7255 25 7 1.9113 -0.5503 -4.8873 26 6 1.0954 0.5921 -5.3061 27 6 1.0477 0.6518 -6.8342 28 6 -0.3240 0.4334 -4.7574 29 6 1.7102 1.8840 -4.7641 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7082 1.1609 3.4844 34 1 1.1488 0.5385 -2.5436 35 1 3.3258 -2.5443 -2.7439 36 1 2.5184 -1.3973 -6.8048 37 1 0.6097 -0.2685 -7.2203 38 1 0.4403 1.5015 -7.1458 39 1 2.0588 0.7649 -7.2251 40 1 -0.2901 0.3908 -3.6688 41 1 -0.9312 1.2832 -5.0694 42 1 -0.7621 -0.4869 -5.1436 43 1 2.7215 1.9971 -5.1551 44 1 1.1029 2.7339 -5.0754 45 1 1.7441 1.8414 -3.6755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:12 Heat of formation + Delta-G solvation = 118.187137 kcal Electronic energy + Delta-G solvation = -28900.179261 eV Core-core repulsion = 24956.173398 eV Total energy + Delta-G solvation = -3944.005864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.29837 -42.80817 -40.45761 -37.56160 -35.84562 -35.67307 -35.13954 -34.13249 -32.54840 -30.83786 -29.36465 -28.36741 -28.06760 -27.22172 -25.50958 -25.18130 -24.64169 -22.72019 -21.84788 -20.78756 -20.33312 -19.90058 -18.29632 -18.00577 -17.94857 -17.56302 -16.63650 -16.50835 -16.37094 -15.78877 -15.49946 -15.23499 -14.98305 -14.68477 -14.54717 -14.30512 -14.27799 -13.64377 -13.48914 -13.19472 -13.11920 -13.00131 -12.93305 -12.82777 -12.74608 -12.72481 -12.54091 -12.36927 -12.26718 -12.19973 -12.02870 -11.99590 -11.98606 -11.93215 -11.26490 -11.07313 -10.59735 -10.30665 -9.47580 -8.48613 -8.16455 -6.26131 0.13913 0.62559 1.13709 1.38563 1.41463 1.43031 1.54034 1.60329 2.02348 2.27571 2.35178 2.46883 3.01325 3.14144 3.29863 3.57362 3.78725 3.90215 4.06843 4.12355 4.39549 4.49683 4.56261 4.62573 4.67004 4.69459 4.73664 4.81195 4.86927 4.88561 4.89706 4.94068 4.96415 5.10291 5.17737 5.23246 5.24446 5.41092 5.46651 5.70156 5.72634 5.76743 5.93588 5.99991 6.19203 6.40106 6.67518 6.82732 7.26943 7.34330 7.44990 8.89585 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.003709 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.217442 B = 7547.686055 C = 9862.634691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.522 3.478 13 O -0.548 6.548 14 N -0.644 5.644 15 C 0.248 3.752 16 C -0.207 4.207 17 C -0.122 4.122 18 C 0.257 3.743 19 N -0.292 5.292 20 N -0.057 5.057 21 N -0.209 5.209 22 H 0.491 0.509 23 N -0.320 5.320 24 C 0.066 3.934 25 N -0.433 5.433 26 C 0.142 3.858 27 C -0.151 4.151 28 C -0.164 4.164 29 C -0.164 4.164 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.415 0.585 35 H 0.132 0.868 36 H 0.209 0.791 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 0.825 -21.688 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.014 3.986 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.312 3.688 13 O -0.424 6.424 14 N -0.294 5.294 15 C 0.045 3.955 16 C -0.235 4.235 17 C -0.133 4.133 18 C -0.022 4.022 19 N -0.166 5.166 20 N -0.052 5.052 21 N -0.059 5.059 22 H 0.349 0.651 23 N -0.172 5.172 24 C -0.069 4.069 25 N -0.115 5.115 26 C 0.061 3.939 27 C -0.209 4.209 28 C -0.222 4.222 29 C -0.222 4.222 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.226 0.774 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.575 0.175 -21.943 21.951 hybrid contribution 0.451 -0.535 1.909 2.033 sum -0.124 -0.360 -20.034 20.037 Atomic orbital electron populations 1.21601 0.94715 0.99691 1.01965 1.18786 0.95468 0.96014 0.88378 0.93401 1.21254 1.31794 1.12864 0.90872 0.93170 1.25520 0.95102 0.95700 1.01216 1.69922 1.36974 1.23455 1.24413 0.85627 0.78397 0.78791 0.79267 1.20078 1.19895 1.20508 1.21842 0.78581 0.84154 0.84220 1.90500 1.38015 1.27493 1.86387 1.43281 1.52323 1.31097 1.02651 1.17168 1.02359 0.96020 0.79989 1.20932 1.06593 0.99469 0.96475 1.16414 1.07235 0.96719 0.92946 1.22957 0.97734 0.95622 0.85890 1.75982 1.13777 1.07778 1.19023 1.78702 1.11947 1.09079 1.05497 1.47708 1.33898 1.22811 1.01451 0.65109 1.75087 1.14266 1.04783 1.23068 1.21913 0.97756 0.90426 0.96803 1.44520 1.40298 1.24283 1.02421 1.21349 0.90398 0.83529 0.98643 1.22152 1.04450 1.05032 0.89216 1.22339 0.94299 1.04740 1.00834 1.22341 1.02534 0.96532 1.00806 0.93030 0.90518 0.95700 0.92491 0.74460 0.84984 0.77436 0.90769 0.87628 0.90756 0.93546 0.87119 0.91679 0.91659 0.87114 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.87 71.98 0.64 -4.70 16 2 C 0.03 1.71 2.64 -12.29 -0.03 1.68 16 3 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.53 -30.17 8.37 25.60 0.21 -29.96 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.33 5.30 84.66 0.45 1.78 16 7 N -0.91 -49.68 11.32 21.45 0.24 -49.43 16 8 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 C 0.52 24.04 7.11 87.66 0.62 24.67 16 13 O -0.55 -29.33 12.55 -3.10 -0.04 -29.37 16 14 N -0.64 -22.87 4.58 -307.96 -1.41 -24.28 16 15 C 0.25 8.49 6.95 130.65 0.91 9.40 16 16 C -0.21 -8.15 9.67 22.49 0.22 -7.93 16 17 C -0.12 -3.99 6.12 -20.20 -0.12 -4.11 16 18 C 0.26 8.19 8.18 137.37 1.12 9.31 16 19 N -0.29 -8.38 12.53 -52.18 -0.65 -9.03 16 20 N -0.06 -1.41 13.47 37.02 0.50 -0.91 16 21 N -0.21 -4.54 7.90 37.02 0.29 -4.25 16 22 H 0.49 5.60 8.96 -347.54 -3.12 2.49 16 23 N -0.32 -9.82 12.40 -52.13 -0.65 -10.46 16 24 C 0.07 1.64 10.29 83.42 0.86 2.50 16 25 N -0.43 -10.73 2.63 -476.10 -1.25 -11.98 16 26 C 0.14 2.28 1.05 3.60 0.00 2.28 16 27 C -0.15 -1.43 7.34 71.98 0.53 -0.90 16 28 C -0.16 -2.52 8.46 71.98 0.61 -1.91 16 29 C -0.16 -2.52 8.46 71.98 0.61 -1.92 16 30 H 0.05 1.77 7.56 -2.39 -0.02 1.76 16 31 H 0.08 3.71 6.07 -2.39 -0.01 3.69 16 32 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.42 12.10 4.27 -92.71 -0.40 11.71 16 35 H 0.13 6.29 5.79 -2.91 -0.02 6.27 16 36 H 0.21 3.66 7.10 -2.92 -0.02 3.64 16 37 H 0.07 0.69 7.84 -2.39 -0.02 0.67 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.69 7.82 -2.39 -0.02 0.67 16 40 H 0.05 0.90 5.83 -2.39 -0.01 0.89 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.04 0.89 5.81 -2.39 -0.01 0.88 16 Total: -1.00 -75.42 366.15 3.23 -72.18 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -2.45 Total: 20.79 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 6.63 Total: 0.19 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -2.93 Total: -110.35 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.04 Total: -29.37 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -75.42 3.23 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.371 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds