Wall clock time and date at job start Tue Mar 31 2020 18:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34837 * 125.52596 * 2 1 4 4 C 1.36560 * 108.61313 * 179.97438 * 3 2 1 5 5 C 1.48506 * 126.28459 * 179.97438 * 4 3 2 6 6 N 1.34041 * 126.67222 * 359.69792 * 5 4 3 7 7 N 1.28980 * 107.26742 * 179.86688 * 6 5 4 8 8 N 1.28729 * 108.94630 * 0.39365 * 7 6 5 9 9 H 0.97001 * 125.35069 * 179.77084 * 8 7 6 10 10 N 1.28878 * 109.30933 * 359.74707 * 8 7 6 11 11 C 1.40809 * 107.43340 * 359.78548 * 4 3 2 12 12 C 1.36669 * 107.04748 * 0.34967 * 11 4 3 13 13 C 1.46728 * 126.01822 * 179.90783 * 12 11 4 14 14 O 1.21692 * 119.99688 * 182.86326 * 13 12 11 15 15 N 1.34773 * 120.00092 * 2.86879 * 13 12 11 16 16 C 1.46505 * 119.99836 * 174.89160 * 15 13 12 17 17 C 1.52997 * 109.47015 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47212 * 299.99515 * 17 16 15 19 19 C 1.53005 * 109.47157 * 59.99725 * 17 16 15 20 20 C 1.53000 * 109.47252 * 179.97438 * 17 16 15 21 21 C 1.50702 * 109.47146 * 180.02562 * 20 17 16 22 22 H 1.08001 * 120.00268 * 0.02562 * 21 20 17 23 23 C 1.37884 * 119.99904 * 180.02562 * 21 20 17 24 24 N 1.31513 * 119.99672 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99905 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47024 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46654 * 120.00136 * 25 23 21 28 28 H 1.48496 * 109.47113 * 240.00087 * 25 23 21 29 29 H 1.09000 * 109.46879 * 265.08248 * 1 2 3 30 30 H 1.08996 * 109.46969 * 25.08462 * 1 2 3 31 31 H 1.09000 * 109.47132 * 145.07794 * 1 2 3 32 32 H 1.08010 * 125.69598 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.47128 * 180.24874 * 11 4 3 34 34 H 0.96999 * 119.99872 * 354.88063 * 15 13 12 35 35 H 1.08995 * 109.47366 * 59.99515 * 16 15 13 36 36 H 1.09002 * 109.46849 * 299.99060 * 16 15 13 37 37 H 1.09000 * 109.47187 * 60.00157 * 18 17 16 38 38 H 1.09002 * 109.47120 * 179.97438 * 18 17 16 39 39 H 1.08995 * 109.47184 * 300.00215 * 18 17 16 40 40 H 1.08994 * 109.47297 * 60.00059 * 19 17 16 41 41 H 1.09001 * 109.46933 * 180.02562 * 19 17 16 42 42 H 1.09000 * 109.47028 * 299.99713 * 19 17 16 43 43 H 1.08994 * 109.47233 * 299.99960 * 20 17 16 44 44 H 1.08995 * 109.46807 * 59.99990 * 20 17 16 45 45 H 0.97002 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2486 1.0974 0.0000 4 6 3.5551 0.7001 0.0006 5 6 4.7442 1.5897 0.0002 6 7 4.7411 2.9301 -0.0063 7 7 5.9719 3.3158 -0.0012 8 7 6.7348 2.2789 -0.0001 9 1 7.7047 2.2958 0.0003 10 7 6.0077 1.2149 0.0008 11 6 3.5679 -0.7079 0.0060 12 6 2.2650 -1.1205 0.0005 13 6 1.8006 -2.5123 0.0014 14 8 0.6098 -2.7565 -0.0565 15 7 2.6928 -3.5204 0.0665 16 6 2.2270 -4.9047 0.1802 17 6 3.4323 -5.8455 0.2349 18 6 4.2596 -5.6893 -1.0426 19 6 4.2968 -5.4969 1.4482 20 6 2.9458 -7.2912 0.3544 21 6 4.1331 -8.2178 0.4089 22 1 5.1344 -7.8158 0.3633 23 6 3.9409 -9.5789 0.5169 24 7 2.7215 -10.0684 0.5719 25 14 5.4125 -10.7275 0.5838 26 1 6.6646 -9.9330 0.5043 27 1 5.3893 -11.4879 1.8592 28 1 5.3534 -11.6747 -0.5584 29 1 -0.3633 -0.0881 1.0239 30 1 -0.3633 0.9307 -0.4357 31 1 -0.3633 -0.8426 -0.5883 32 1 1.9009 2.1200 0.0004 33 1 4.4422 -1.3420 0.0116 34 1 3.6434 -3.3293 0.0378 35 1 1.6115 -5.1532 -0.6843 36 1 1.6373 -5.0159 1.0902 37 1 4.6062 -4.6593 -1.1273 38 1 5.1185 -6.3592 -1.0034 39 1 3.6437 -5.9376 -1.9069 40 1 3.7074 -5.6082 2.3583 41 1 5.1557 -6.1668 1.4869 42 1 4.6434 -4.4669 1.3635 43 1 2.3567 -7.4022 1.2647 44 1 2.3298 -7.5398 -0.5097 45 1 2.5863 -11.0259 0.6483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609477886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:02 Heat of formation + Delta-G solvation = 121.506004 kcal Electronic energy + Delta-G solvation = -27730.639026 eV Core-core repulsion = 23786.777080 eV Total energy + Delta-G solvation = -3943.861947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.58056 -41.77114 -39.21058 -37.05906 -34.70807 -34.17080 -33.65700 -32.45656 -31.95434 -29.83860 -27.13847 -27.08839 -26.51425 -26.20952 -24.79087 -23.98550 -23.23948 -21.87875 -20.61077 -19.93201 -19.22879 -18.25863 -17.55097 -17.28749 -16.33919 -16.05820 -15.89770 -15.37296 -14.78413 -14.75473 -14.50537 -14.17596 -13.92445 -13.60962 -13.52760 -13.06872 -12.95883 -12.78953 -12.76598 -12.44779 -12.27091 -12.15878 -12.07523 -11.54539 -11.26964 -11.18489 -11.13600 -11.03162 -10.84401 -10.65379 -10.42567 -10.25332 -9.98655 -9.89489 -9.20823 -8.96225 -8.93194 -8.84669 -8.40138 -8.37129 -6.01139 -4.02153 0.85291 1.30340 1.44626 2.03896 2.41581 2.85772 3.29561 3.34905 3.37902 3.39195 3.40869 3.73098 4.01756 4.44466 4.60574 4.71872 4.75925 5.04285 5.07814 5.16725 5.33645 5.34670 5.43115 5.47273 5.60239 5.61763 5.74012 5.85861 6.16442 6.18503 6.19719 6.22587 6.31837 6.37712 6.51853 6.59579 6.62916 6.73240 6.81911 7.04997 7.06878 7.11015 7.62438 7.66283 7.74752 7.97729 8.00372 8.28623 8.39916 9.02833 9.61079 11.10364 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002440 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.088525 B =11473.694347 C =13098.053044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.402 5.402 3 C 0.074 3.926 4 C -0.119 4.119 5 C 0.264 3.736 6 N -0.280 5.280 7 N -0.055 5.055 8 N -0.231 5.231 9 H 0.474 0.526 10 N -0.298 5.298 11 C -0.101 4.101 12 C -0.039 4.039 13 C 0.582 3.418 14 O -0.551 6.551 15 N -0.706 5.706 16 C 0.130 3.870 17 C -0.072 4.072 18 C -0.128 4.128 19 C -0.128 4.128 20 C 0.036 3.964 21 C -0.510 4.510 22 H 0.060 0.940 23 C 0.055 3.945 24 N -0.894 5.894 25 Si 0.888 3.112 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.153 0.847 34 H 0.401 0.599 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 25.435 -1.311 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.073 5.073 3 C -0.068 4.068 4 C -0.129 4.129 5 C -0.016 4.016 6 N -0.153 5.153 7 N -0.050 5.050 8 N -0.077 5.077 9 H 0.328 0.672 10 N -0.150 5.150 11 C -0.128 4.128 12 C -0.151 4.151 13 C 0.369 3.631 14 O -0.431 6.431 15 N -0.357 5.357 16 C 0.008 3.992 17 C -0.073 4.073 18 C -0.186 4.186 19 C -0.186 4.186 20 C -0.002 4.002 21 C -0.548 4.548 22 H 0.078 0.922 23 C -0.145 4.145 24 N -0.534 5.534 25 Si 0.717 3.283 26 H -0.198 1.198 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.200 0.800 33 H 0.171 0.829 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.952 25.584 -1.323 25.693 hybrid contribution 1.665 -1.006 0.074 1.947 sum 3.618 24.578 -1.249 24.874 Atomic orbital electron populations 1.22378 0.75051 1.05296 1.04786 1.43684 1.07426 1.04642 1.51588 1.21843 0.89119 0.92148 1.03657 1.16241 0.87657 0.91123 1.17906 1.22810 0.90195 0.88788 0.99802 1.76047 1.10179 1.10209 1.18909 1.78856 0.96371 1.14842 1.14967 1.47703 1.12721 1.00823 1.46448 0.67190 1.74988 1.03722 1.13340 1.22922 1.21060 0.95284 0.93395 1.03051 1.19904 0.89777 0.88263 1.17168 1.16929 0.85968 0.83200 0.77046 1.90784 1.15935 1.84997 1.51412 1.45899 1.09705 1.06890 1.73214 1.21696 0.97674 0.77969 1.01870 1.20914 0.93291 0.97834 0.95227 1.21773 1.00787 0.98983 0.97010 1.21776 1.00630 0.98686 0.97466 1.19098 0.96628 0.87005 0.97453 1.21218 0.92824 0.91018 1.49743 0.92167 1.25017 0.95474 0.98464 0.95591 1.69974 1.20006 1.12716 1.50696 0.86595 0.83126 0.81087 0.77533 1.19783 1.21155 1.21148 0.90057 0.89518 0.87500 0.80045 0.82912 0.76235 0.91457 0.91579 0.95157 0.91356 0.93301 0.93319 0.91359 0.95141 0.96309 0.96289 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.45 59.85 0.63 1.15 16 2 N -0.40 -4.15 3.14 -120.43 -0.38 -4.53 16 3 C 0.07 0.69 11.30 -16.84 -0.19 0.50 16 4 C -0.12 -1.29 6.10 -105.30 -0.64 -1.94 16 5 C 0.26 2.93 8.17 -156.30 -1.28 1.66 16 6 N -0.28 -3.14 12.53 32.16 0.40 -2.73 16 7 N -0.06 -0.53 13.47 60.35 0.81 0.28 16 8 N -0.23 -1.69 7.90 60.35 0.48 -1.21 16 9 H 0.47 1.21 8.96 -340.37 -3.05 -1.84 16 10 N -0.30 -3.00 12.40 32.18 0.40 -2.60 16 11 C -0.10 -1.13 10.28 -39.18 -0.40 -1.53 16 12 C -0.04 -0.48 6.84 -82.38 -0.56 -1.04 16 13 C 0.58 8.56 7.78 -12.83 -0.10 8.46 16 14 O -0.55 -9.54 14.72 5.20 0.08 -9.46 16 15 N -0.71 -10.04 4.94 -61.60 -0.30 -10.34 16 16 C 0.13 2.21 4.57 -4.04 -0.02 2.19 16 17 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 18 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 19 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 20 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 21 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 22 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 23 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 24 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 25 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.11 1.07 6.50 -51.93 -0.34 0.73 16 32 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.15 1.51 7.40 -52.49 -0.39 1.12 16 34 H 0.40 4.94 5.02 -40.82 -0.20 4.74 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 38 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 42 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -33.51 374.51 -8.30 -41.81 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.62 Total: -0.31 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.53 Total: -7.13 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 2.15 Total: -46.52 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.51 -8.30 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609477886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.316 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds