Wall clock time and date at job start Tue Mar 31 2020 18:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34837 * 125.52596 * 2 1 4 4 C 1.36560 * 108.61313 * 179.97438 * 3 2 1 5 5 C 1.48506 * 126.28459 * 179.97438 * 4 3 2 6 6 N 1.34041 * 126.67222 * 359.69792 * 5 4 3 7 7 N 1.28980 * 107.26742 * 179.86688 * 6 5 4 8 8 N 1.28729 * 108.94630 * 0.39365 * 7 6 5 9 9 H 0.97001 * 125.35069 * 179.77084 * 8 7 6 10 10 N 1.28878 * 109.30933 * 359.74707 * 8 7 6 11 11 C 1.40809 * 107.43340 * 359.78548 * 4 3 2 12 12 C 1.36669 * 107.04748 * 0.34967 * 11 4 3 13 13 C 1.46728 * 126.01822 * 179.90783 * 12 11 4 14 14 O 1.21692 * 119.99688 * 182.86326 * 13 12 11 15 15 N 1.34773 * 120.00092 * 2.86879 * 13 12 11 16 16 C 1.46505 * 119.99836 * 174.89160 * 15 13 12 17 17 C 1.52997 * 109.47015 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47212 * 299.99515 * 17 16 15 19 19 C 1.53005 * 109.47157 * 59.99725 * 17 16 15 20 20 C 1.53000 * 109.47252 * 179.97438 * 17 16 15 21 21 C 1.50702 * 109.47146 * 180.02562 * 20 17 16 22 22 H 1.08001 * 120.00268 * 0.02562 * 21 20 17 23 23 C 1.37884 * 119.99904 * 180.02562 * 21 20 17 24 24 N 1.31513 * 119.99672 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99905 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47024 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46654 * 120.00136 * 25 23 21 28 28 H 1.48496 * 109.47113 * 240.00087 * 25 23 21 29 29 H 1.09000 * 109.46879 * 265.08248 * 1 2 3 30 30 H 1.08996 * 109.46969 * 25.08462 * 1 2 3 31 31 H 1.09000 * 109.47132 * 145.07794 * 1 2 3 32 32 H 1.08010 * 125.69598 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.47128 * 180.24874 * 11 4 3 34 34 H 0.96999 * 119.99872 * 354.88063 * 15 13 12 35 35 H 1.08995 * 109.47366 * 59.99515 * 16 15 13 36 36 H 1.09002 * 109.46849 * 299.99060 * 16 15 13 37 37 H 1.09000 * 109.47187 * 60.00157 * 18 17 16 38 38 H 1.09002 * 109.47120 * 179.97438 * 18 17 16 39 39 H 1.08995 * 109.47184 * 300.00215 * 18 17 16 40 40 H 1.08994 * 109.47297 * 60.00059 * 19 17 16 41 41 H 1.09001 * 109.46933 * 180.02562 * 19 17 16 42 42 H 1.09000 * 109.47028 * 299.99713 * 19 17 16 43 43 H 1.08994 * 109.47233 * 299.99960 * 20 17 16 44 44 H 1.08995 * 109.46807 * 59.99990 * 20 17 16 45 45 H 0.97002 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2486 1.0974 0.0000 4 6 3.5551 0.7001 0.0006 5 6 4.7442 1.5897 0.0002 6 7 4.7411 2.9301 -0.0063 7 7 5.9719 3.3158 -0.0012 8 7 6.7348 2.2789 -0.0001 9 1 7.7047 2.2958 0.0003 10 7 6.0077 1.2149 0.0008 11 6 3.5679 -0.7079 0.0060 12 6 2.2650 -1.1205 0.0005 13 6 1.8006 -2.5123 0.0014 14 8 0.6098 -2.7565 -0.0565 15 7 2.6928 -3.5204 0.0665 16 6 2.2270 -4.9047 0.1802 17 6 3.4323 -5.8455 0.2349 18 6 4.2596 -5.6893 -1.0426 19 6 4.2968 -5.4969 1.4482 20 6 2.9458 -7.2912 0.3544 21 6 4.1331 -8.2178 0.4089 22 1 5.1344 -7.8158 0.3633 23 6 3.9409 -9.5789 0.5169 24 7 2.7215 -10.0684 0.5719 25 14 5.4125 -10.7275 0.5838 26 1 6.6646 -9.9330 0.5043 27 1 5.3893 -11.4879 1.8592 28 1 5.3534 -11.6747 -0.5584 29 1 -0.3633 -0.0881 1.0239 30 1 -0.3633 0.9307 -0.4357 31 1 -0.3633 -0.8426 -0.5883 32 1 1.9009 2.1200 0.0004 33 1 4.4422 -1.3420 0.0116 34 1 3.6434 -3.3293 0.0378 35 1 1.6115 -5.1532 -0.6843 36 1 1.6373 -5.0159 1.0902 37 1 4.6062 -4.6593 -1.1273 38 1 5.1185 -6.3592 -1.0034 39 1 3.6437 -5.9376 -1.9069 40 1 3.7074 -5.6082 2.3583 41 1 5.1557 -6.1668 1.4869 42 1 4.6434 -4.4669 1.3635 43 1 2.3567 -7.4022 1.2647 44 1 2.3298 -7.5398 -0.5097 45 1 2.5863 -11.0259 0.6483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609477886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:01 Heat of formation + Delta-G solvation = 98.841563 kcal Electronic energy + Delta-G solvation = -27731.621830 eV Core-core repulsion = 23786.777080 eV Total energy + Delta-G solvation = -3944.844751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.29122 -42.60380 -40.43429 -38.53058 -35.52537 -35.26270 -34.73559 -34.03508 -32.96980 -30.78805 -29.02125 -27.93067 -27.81500 -27.51913 -25.61535 -25.01188 -24.65022 -23.07308 -21.38337 -20.94291 -20.21459 -19.38723 -18.61097 -18.32796 -17.99434 -17.19049 -16.82138 -16.50398 -16.37508 -15.94382 -15.54057 -15.17574 -14.94970 -14.86902 -14.73804 -14.42937 -14.26754 -13.91792 -13.75425 -13.65783 -13.44697 -13.15952 -13.00578 -12.88023 -12.68058 -12.57162 -12.31392 -12.26343 -12.20995 -12.01388 -11.93373 -11.88039 -11.51365 -11.23562 -10.91057 -10.81174 -10.49981 -10.14321 -9.72431 -9.23271 -8.12267 -6.19285 0.15614 0.42959 0.64162 1.42769 1.44027 1.45744 1.55582 1.67192 2.02477 2.32628 2.37148 2.46865 2.95127 3.22610 3.26691 3.73560 3.98274 4.02020 4.08759 4.11127 4.25089 4.28743 4.44168 4.46222 4.59272 4.71489 4.75134 4.78969 4.80844 4.83973 4.99768 5.07833 5.13518 5.15933 5.38725 5.45082 5.51418 5.53626 5.56528 5.60157 5.72404 5.79036 5.83133 5.92628 6.09221 6.32936 6.53981 6.96140 7.16172 7.28040 7.48260 9.00406 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002440 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.088525 B =11473.694347 C =13098.053044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.404 5.404 3 C 0.096 3.904 4 C -0.138 4.138 5 C 0.254 3.746 6 N -0.298 5.298 7 N -0.061 5.061 8 N -0.206 5.206 9 H 0.492 0.508 10 N -0.307 5.307 11 C -0.090 4.090 12 C -0.066 4.066 13 C 0.583 3.417 14 O -0.584 6.584 15 N -0.697 5.697 16 C 0.145 3.855 17 C -0.063 4.063 18 C -0.123 4.123 19 C -0.123 4.123 20 C 0.039 3.961 21 C -0.510 4.510 22 H 0.073 0.927 23 C -0.006 4.006 24 N -0.938 5.938 25 Si 0.957 3.043 26 H -0.257 1.257 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.212 0.788 33 H 0.164 0.836 34 H 0.413 0.587 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.068 0.932 43 H -0.012 1.012 44 H -0.012 1.012 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 27.944 -1.401 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.075 5.075 3 C -0.047 4.047 4 C -0.147 4.147 5 C -0.026 4.026 6 N -0.171 5.171 7 N -0.056 5.056 8 N -0.056 5.056 9 H 0.350 0.650 10 N -0.159 5.159 11 C -0.117 4.117 12 C -0.178 4.178 13 C 0.371 3.629 14 O -0.466 6.466 15 N -0.349 5.349 16 C 0.021 3.979 17 C -0.064 4.064 18 C -0.181 4.181 19 C -0.180 4.180 20 C 0.002 3.998 21 C -0.548 4.548 22 H 0.091 0.909 23 C -0.202 4.202 24 N -0.580 5.580 25 Si 0.782 3.218 26 H -0.180 1.180 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.182 0.818 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.006 0.994 44 H 0.006 0.994 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.213 28.121 -1.415 28.470 hybrid contribution 0.986 -1.678 0.097 1.949 sum 5.199 26.443 -1.318 26.982 Atomic orbital electron populations 1.22501 0.73956 1.06278 1.04953 1.43876 1.08183 1.04318 1.51126 1.22330 0.88558 0.92912 1.00868 1.16371 0.88372 0.91002 1.19003 1.22867 0.90519 0.88875 1.00301 1.76023 1.10903 1.10326 1.19847 1.78802 0.96294 1.15238 1.15221 1.47750 1.13547 0.99832 1.44516 0.64956 1.74944 1.03686 1.14125 1.23170 1.21219 0.95076 0.93908 1.01495 1.19546 0.90612 0.87454 1.20156 1.17244 0.85408 0.84202 0.76012 1.90771 1.17349 1.85632 1.52887 1.45637 1.10324 1.05562 1.73390 1.21269 0.96641 0.79474 1.00496 1.20701 0.94143 0.94497 0.97053 1.21711 0.99718 1.01101 0.95531 1.21712 0.99522 1.00730 0.96079 1.18980 0.95484 0.90885 0.94496 1.21624 0.93804 0.91360 1.48029 0.90933 1.25932 0.98140 1.00542 0.95636 1.70126 1.22390 1.12965 1.52494 0.85516 0.80166 0.78872 0.77215 1.18039 1.21142 1.21149 0.89715 0.85835 0.89813 0.77094 0.81823 0.74850 0.93094 0.93021 0.91308 0.92511 0.94315 0.94262 0.92536 0.91274 0.99372 0.99411 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 10.45 127.77 1.34 2.25 16 2 N -0.40 -7.56 3.14 -534.92 -1.68 -9.24 16 3 C 0.10 1.52 11.30 83.84 0.95 2.47 16 4 C -0.14 -2.66 6.10 -20.30 -0.12 -2.78 16 5 C 0.25 5.06 8.17 137.40 1.12 6.18 16 6 N -0.30 -6.02 12.53 -52.16 -0.65 -6.68 16 7 N -0.06 -1.03 13.47 37.02 0.50 -0.53 16 8 N -0.21 -2.50 7.90 37.02 0.29 -2.20 16 9 H 0.49 1.21 8.96 -347.53 -3.12 -1.90 16 10 N -0.31 -5.41 12.40 -52.11 -0.65 -6.05 16 11 C -0.09 -1.81 10.28 22.53 0.23 -1.58 16 12 C -0.07 -1.53 6.84 40.08 0.27 -1.25 16 13 C 0.58 16.87 7.78 86.46 0.67 17.55 16 14 O -0.58 -20.59 14.72 -4.32 -0.06 -20.66 16 15 N -0.70 -19.16 4.94 -467.03 -2.31 -21.47 16 16 C 0.15 5.01 4.57 86.38 0.39 5.40 16 17 C -0.06 -2.34 0.54 -52.18 -0.03 -2.36 16 18 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 19 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 20 C 0.04 1.95 4.04 29.85 0.12 2.07 16 21 C -0.51 -26.95 7.65 25.60 0.20 -26.76 16 22 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 23 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 24 N -0.94 -56.63 13.29 21.45 0.28 -56.34 16 25 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 27 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.12 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.08 1.67 6.50 -2.39 -0.02 1.65 16 32 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.16 2.78 7.40 -2.91 -0.02 2.76 16 34 H 0.41 9.17 5.02 -92.71 -0.47 8.71 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 38 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.99 6.62 -2.39 -0.02 1.98 16 42 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 43 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -74.68 374.51 1.99 -72.69 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -2.53 Total: 10.77 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 6.76 Total: -5.62 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -4.21 Total: -102.51 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.68 1.99 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609477886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.532 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds