Wall clock time and date at job start Tue Mar 31 2020 18:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.53874 * 2 1 4 4 C 1.53103 * 109.50746 * 239.89129 * 2 1 3 5 5 N 1.47015 * 109.25538 * 183.21409 * 4 2 1 6 6 C 1.38576 * 110.99595 * 182.39115 * 5 4 2 7 7 N 1.31214 * 126.38312 * 0.02562 * 6 5 4 8 8 N 1.28511 * 110.09646 * 179.82329 * 7 6 5 9 9 C 1.31212 * 109.96987 * 0.44895 * 8 7 6 10 10 C 1.47981 * 126.47393 * 179.71575 * 9 8 7 11 11 C 1.41012 * 126.25405 * 195.05144 * 10 9 8 12 12 N 1.30635 * 108.08818 * 179.97438 * 11 10 9 13 13 N 1.39999 * 108.58281 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.87061 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46708 * 304.96893 * 14 13 12 16 16 H 1.08000 * 120.00122 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99834 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99952 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47562 * 59.99486 * 19 17 15 21 21 H 1.48503 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46773 * 299.99739 * 19 17 15 23 23 C 1.34817 * 108.26044 * 359.72695 * 13 12 11 24 24 N 1.36649 * 126.37937 * 180.32038 * 6 5 4 25 25 C 1.46499 * 127.17971 * 359.97438 * 24 6 5 26 26 C 1.47016 * 110.75076 * 58.61911 * 5 4 2 27 27 C 1.53103 * 109.29298 * 301.35892 * 26 5 4 28 28 O 1.43016 * 109.50608 * 120.10877 * 2 1 3 29 29 H 1.09002 * 109.46827 * 180.10829 * 1 2 3 30 30 H 1.08997 * 109.47205 * 300.10836 * 1 2 3 31 31 H 1.09003 * 109.46791 * 60.11380 * 1 2 3 32 32 H 1.08998 * 109.50706 * 63.28110 * 4 2 1 33 33 H 1.08997 * 109.53776 * 303.16952 * 4 2 1 34 34 H 1.08008 * 125.95764 * 359.97348 * 11 10 9 35 35 H 1.08998 * 109.47353 * 64.96560 * 14 13 12 36 36 H 1.08993 * 109.47157 * 184.96908 * 14 13 12 37 37 H 0.97001 * 119.99710 * 180.02562 * 18 17 15 38 38 H 1.08002 * 126.21402 * 180.26358 * 23 13 12 39 39 H 1.08997 * 109.47500 * 89.99162 * 25 24 6 40 40 H 1.09003 * 109.46969 * 210.00359 * 25 24 6 41 41 H 1.09000 * 109.46827 * 329.99543 * 25 24 6 42 42 H 1.09002 * 109.50934 * 61.31617 * 26 5 4 43 43 H 1.09003 * 109.50733 * 181.40211 * 26 5 4 44 44 H 1.09004 * 109.50456 * 176.81005 * 27 26 5 45 45 H 1.09008 * 109.50567 * 296.93791 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2484 5 7 3.5093 -0.7884 -1.2044 6 6 4.0143 -1.3907 -2.3457 7 7 3.3158 -1.8551 -3.3547 8 7 4.1006 -2.3449 -4.2468 9 6 5.3484 -2.2314 -3.8570 10 6 6.5465 -2.6805 -4.6003 11 6 7.8458 -2.8329 -4.0740 12 7 8.6272 -3.2462 -5.0359 13 7 7.8671 -3.3730 -6.2048 14 6 8.3667 -3.8114 -7.5103 15 6 9.5274 -2.9425 -7.9215 16 1 9.8598 -2.1439 -7.2748 17 6 10.1654 -3.1677 -9.1228 18 7 9.7616 -4.1410 -9.9096 19 14 11.6045 -2.0911 -9.6322 20 1 12.6885 -2.2038 -8.6235 21 1 12.1109 -2.5354 -10.9556 22 1 11.1577 -0.6778 -9.7227 23 6 6.5949 -3.0288 -5.9208 24 7 5.3322 -1.6166 -2.6275 25 6 6.4871 -1.2745 -1.7936 26 6 3.9640 -1.4884 0.0058 27 6 3.4343 -0.7571 1.2422 28 8 2.0076 -0.6763 1.1662 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3633 0.5155 0.8890 31 1 -0.3633 0.5121 -0.8910 32 1 1.7274 -0.1795 -2.1390 33 1 1.6333 -1.7343 -1.2767 34 1 8.1432 -2.6413 -3.0535 35 1 8.6950 -4.8487 -7.4442 36 1 7.5708 -3.7287 -8.2504 37 1 10.2107 -4.2996 -10.7546 38 1 5.7651 -3.0262 -6.6121 39 1 6.7142 -2.1073 -1.1281 40 1 7.3483 -1.0730 -2.4306 41 1 6.2580 -0.3885 -1.2015 42 1 3.5867 -2.5110 -0.0017 43 1 5.0536 -1.5027 0.0304 44 1 3.7216 -1.3047 2.1399 45 1 3.8542 0.2482 1.2783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646660425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:14 Heat of formation + Delta-G solvation = 106.655417 kcal Electronic energy + Delta-G solvation = -28005.000773 eV Core-core repulsion = 24060.494856 eV Total energy + Delta-G solvation = -3944.505916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.96686 -42.03902 -40.75188 -37.15038 -36.14409 -35.60266 -33.83906 -33.55586 -32.41265 -30.54480 -29.51985 -28.55691 -28.36217 -26.97631 -25.48438 -24.22387 -23.42015 -22.52298 -21.71717 -21.42138 -21.01689 -18.79789 -18.50047 -17.91609 -17.58754 -17.41900 -17.01738 -16.58280 -16.34785 -16.29770 -15.95092 -15.71256 -15.49635 -15.25960 -14.86665 -14.33393 -14.24908 -14.04089 -13.81328 -13.68758 -13.40102 -13.18048 -12.99564 -12.88659 -12.74550 -12.65839 -12.61164 -12.29386 -12.19357 -11.99685 -11.80326 -11.67686 -11.55218 -11.20274 -11.16725 -10.76598 -10.67627 -10.41556 -9.97729 -8.86274 -8.35300 -6.49441 0.36540 1.09171 1.10073 1.39210 1.40825 1.47730 1.49391 1.72410 2.24446 2.34392 2.46739 2.74967 2.97584 3.34683 3.54102 3.64207 3.70713 3.75619 3.92201 3.93784 4.04236 4.09886 4.22459 4.26430 4.29085 4.35565 4.42532 4.52547 4.57830 4.66463 4.71111 4.77246 4.88171 4.89064 4.95032 4.98807 4.99858 5.04236 5.29019 5.36800 5.46979 5.53143 5.60493 5.78885 6.05101 6.08086 6.14577 6.58311 6.82028 7.20513 7.69496 8.72858 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.002138 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.238437 B =13095.138175 C =13447.375989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.095 3.905 3 H 0.080 0.920 4 C 0.043 3.957 5 N -0.442 5.442 6 C 0.352 3.648 7 N -0.353 5.353 8 N -0.326 5.326 9 C 0.285 3.715 10 C -0.203 4.203 11 C 0.060 3.940 12 N -0.313 5.313 13 N -0.339 5.339 14 C 0.267 3.733 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.017 3.983 18 N -0.920 5.920 19 Si 0.973 3.027 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.270 1.270 23 C 0.101 3.899 24 N -0.477 5.477 25 C 0.056 3.944 26 C 0.008 3.992 27 C 0.068 3.932 28 O -0.396 6.396 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.219 0.781 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.273 0.727 38 H 0.189 0.811 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.114 0.886 44 H 0.130 0.870 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 9.353 24.890 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.098 0.902 4 C -0.084 4.084 5 N -0.167 5.167 6 C -0.005 4.005 7 N -0.198 5.198 8 N -0.166 5.166 9 C 0.017 3.983 10 C -0.218 4.218 11 C -0.128 4.128 12 N -0.134 5.134 13 N -0.117 5.117 14 C 0.148 3.852 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.195 1.195 23 C -0.053 4.053 24 N -0.172 5.172 25 C -0.084 4.084 26 C -0.118 4.118 27 C -0.008 4.008 28 O -0.315 6.315 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.236 0.764 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.206 0.794 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.096 8.924 23.594 27.975 hybrid contribution 0.832 0.016 -0.227 0.863 sum -11.264 8.939 23.367 27.437 Atomic orbital electron populations 1.21761 0.91029 1.03248 1.03969 1.22288 0.96294 0.95453 0.82308 0.90243 1.22821 0.82836 1.01549 1.01179 1.59073 1.12303 1.47196 0.98100 1.22680 0.81788 0.99456 0.96577 1.74378 1.26143 1.17443 1.01800 1.74229 0.98614 1.20994 1.22725 1.21616 0.93450 0.98380 0.84811 1.17239 0.91042 1.20583 0.92947 1.24477 0.89407 0.98826 1.00095 1.77278 1.21262 1.23040 0.91788 1.49184 1.05370 1.47295 1.09805 1.19436 0.95910 0.95493 0.74324 1.21338 1.15904 1.16746 1.04646 0.92372 1.25766 1.00088 0.96717 0.95755 1.69993 1.42535 1.31187 1.12158 0.85377 0.78626 0.78739 0.77579 1.19538 1.20073 1.19456 1.22862 0.88902 0.96648 0.96845 1.46089 1.07467 1.46728 1.16879 1.22711 0.85817 1.04386 0.95507 1.23287 1.03315 0.96543 0.88683 1.22868 0.80187 1.01372 0.96394 1.88026 1.22042 1.78543 1.42865 0.92278 0.90329 0.89496 0.89042 0.93532 0.76428 0.95411 0.92723 0.91815 0.79414 0.87382 0.87998 0.86734 0.93845 0.86807 0.85238 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.57 71.98 0.69 -0.89 16 2 C 0.09 1.33 3.43 30.63 0.10 1.43 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.04 0.83 4.30 86.32 0.37 1.20 16 5 N -0.44 -8.62 4.77 -704.85 -3.37 -11.99 16 6 C 0.35 9.39 7.23 260.02 1.88 11.27 16 7 N -0.35 -12.09 11.29 -57.89 -0.65 -12.74 16 8 N -0.33 -12.13 12.21 -50.78 -0.62 -12.75 16 9 C 0.28 9.23 7.91 136.30 1.08 10.30 16 10 C -0.20 -6.88 6.04 -20.39 -0.12 -7.00 16 11 C 0.06 1.88 10.75 85.55 0.92 2.80 16 12 N -0.31 -12.98 12.36 -56.36 -0.70 -13.68 16 13 N -0.34 -14.96 3.66 -350.78 -1.28 -16.24 16 14 C 0.27 13.44 6.25 85.63 0.54 13.98 16 15 C -0.55 -29.94 9.23 25.60 0.24 -29.71 16 16 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 17 C 0.02 0.94 5.46 84.66 0.46 1.40 16 18 N -0.92 -51.60 13.29 21.45 0.28 -51.31 16 19 Si 0.97 42.65 29.54 68.60 2.03 44.67 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.10 3.88 11.40 83.86 0.96 4.84 16 24 N -0.48 -11.71 3.23 -539.87 -1.74 -13.45 16 25 C 0.06 0.74 8.34 127.77 1.07 1.81 16 26 C 0.01 0.11 5.45 86.32 0.47 0.58 16 27 C 0.07 0.67 7.02 72.02 0.51 1.18 16 28 O -0.40 -6.01 10.47 -148.98 -1.56 -7.57 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.22 4.51 6.15 -2.91 -0.02 4.49 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 2.75 8.07 -2.39 -0.02 2.73 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.19 6.58 8.06 -2.91 -0.02 6.56 16 39 H 0.11 0.84 7.81 -2.39 -0.02 0.82 16 40 H 0.10 1.34 6.07 -2.39 -0.01 1.33 16 41 H 0.11 1.01 7.61 -2.39 -0.02 0.99 16 42 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.11 1.01 5.33 -2.39 -0.01 1.00 16 44 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -72.86 371.06 2.55 -70.31 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.01 Total: 11.55 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 9.15 Total: 13.20 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -8.08 Total: -132.17 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -1.56 Total: -7.57 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -72.86 2.55 -70.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646660425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.969 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds